Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001828-TA|BGIBMGA001828-PA|IPR007087|Zinc finger,
C2H2-type
(752 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical pr... 37 0.046
Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical pr... 34 0.32
Z92973-3|CAB07491.1| 244|Caenorhabditis elegans Hypothetical pr... 32 1.3
Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical pr... 32 1.3
U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger pro... 32 1.3
Z70267-4|CAA94210.1| 314|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z49128-6|CAA88957.1| 621|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z66523-7|CAA91416.2| 409|Caenorhabditis elegans Hypothetical pr... 31 3.0
Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical pr... 31 3.0
Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical p... 31 4.0
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr... 31 4.0
AL132848-1|CAB60388.2| 381|Caenorhabditis elegans Hypothetical ... 31 4.0
AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein. 31 4.0
AF077536-7|AAT81208.1| 431|Caenorhabditis elegans Hypothetical ... 31 4.0
AF077536-6|AAT81207.1| 570|Caenorhabditis elegans Hypothetical ... 31 4.0
AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical ... 31 4.0
Z81555-1|CAB04516.1| 242|Caenorhabditis elegans Hypothetical pr... 30 5.2
U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical pr... 30 5.2
L17337-4|ABM74561.1| 217|Caenorhabditis elegans Hypothetical pr... 30 6.9
L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical pr... 30 6.9
AC006833-10|AAU87800.1| 262|Caenorhabditis elegans Enhancer of ... 30 6.9
AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical ... 30 6.9
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 29 9.1
Z79695-3|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr... 29 9.1
Z35595-8|CAA84640.1| 540|Caenorhabditis elegans Hypothetical pr... 29 9.1
U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical pr... 29 9.1
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 29 9.1
AC006833-12|AAF60942.1| 218|Caenorhabditis elegans Enhancer of ... 29 9.1
AC006833-11|AAU87801.1| 175|Caenorhabditis elegans Enhancer of ... 29 9.1
>Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical
protein F25D7.3 protein.
Length = 817
Score = 37.1 bits (82), Expect = 0.046
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 640 NYILHSEGAS--FTCVNCNGVFNSIRSLLMHLVHAEHFAYRP-PAECTFRYYLELKHNIN 696
NY+ E + C +CN F + +L +H+ H RP E + + +L H
Sbjct: 496 NYVQQQENGKTRYACKDCNKTFGQLSNLKVHV--RTHTGERPFKCEICTKEFTQLAH--- 550
Query: 697 MLAKNKYVYYSFGRFKCGVCDADIEEGENAKRHV 730
L K+ V+ +C +CD N K H+
Sbjct: 551 -LQKHHLVHTGERPHRCDICDKRFSSTSNLKTHL 583
>Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical
protein F46B6.7 protein.
Length = 614
Score = 34.3 bits (75), Expect = 0.32
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 12/101 (11%)
Query: 591 LKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANRADIISVYMKGNYILHSEGASF 650
L+C++C ++ R NR + H L ++H LN D ++ YI H +
Sbjct: 305 LQCIFCRYNARGNRSKIIHHLYMIHH--------LNLGSPD--NLVFVTEYIEHLKEKLH 354
Query: 651 --TCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYL 689
C+ C +F +L+ H+ H P ++Y+
Sbjct: 355 RNECIYCEKIFPDRNTLMDHMRKRNHREVNPKNHYYDKFYI 395
>Z92973-3|CAB07491.1| 244|Caenorhabditis elegans Hypothetical
protein Y6G8.3 protein.
Length = 244
Score = 32.3 bits (70), Expect = 1.3
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 574 VNNEVDKQFAALNKIEDLK----CVYCNFDFRDNREAVKHA--LSNVYHQSAVAETKLNA 627
+N + K+++ L + DL+ C C F+ N +H L H + + KLNA
Sbjct: 5 LNPVIRKEYSELKR-PDLRGKFICASCGQHFQHNASLNRHRRLLHGNEHTCMMCDRKLNA 63
Query: 628 NRADIISVYMKGNYILHSEGASFTCVNCNGVFNSIRSLLMH 668
+ I +M+ + L FTC CN F+S R L H
Sbjct: 64 K--ETIRDHMRNEHNLFQV---FTCGCCNWSFSSKRQLSEH 99
>Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical
protein F45B8.4 protein.
Length = 336
Score = 32.3 bits (70), Expect = 1.3
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 643 LHSEGASFTCVNCNGVFNSIRSLLMHL-VHAEHFAYRPPAECTFRYYLELKHNINMLAKN 701
+H F C C F +L HL +H++ Y P C R+ H + + K+
Sbjct: 147 VHVSDKQFECKQCGKTFKRSSTLSTHLLIHSDTRPY-PCEYCGKRF-----HQKSDMKKH 200
Query: 702 KYVYYSFGRFKCGVCDADIEEGENAKRH 729
Y++ KC VC + N H
Sbjct: 201 TYIHTGEKPHKCTVCGKAFSQSSNLITH 228
>U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger
protein PAG-3 protein.
Length = 336
Score = 32.3 bits (70), Expect = 1.3
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 643 LHSEGASFTCVNCNGVFNSIRSLLMHL-VHAEHFAYRPPAECTFRYYLELKHNINMLAKN 701
+H F C C F +L HL +H++ Y P C R+ H + + K+
Sbjct: 147 VHVSDKQFECKQCGKTFKRSSTLSTHLLIHSDTRPY-PCEYCGKRF-----HQKSDMKKH 200
Query: 702 KYVYYSFGRFKCGVCDADIEEGENAKRH 729
Y++ KC VC + N H
Sbjct: 201 TYIHTGEKPHKCTVCGKAFSQSSNLITH 228
>Z70267-4|CAA94210.1| 314|Caenorhabditis elegans Hypothetical
protein K04C1.3 protein.
Length = 314
Score = 31.5 bits (68), Expect = 2.3
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 587 KIEDLKCVYCNFDFRDNREAVKHALSNV-------YHQSAVAETKLNANRADIISVYMKG 639
KI +LKC C+ + +N E ++H L + Y Q V A+ + ++V +
Sbjct: 64 KIANLKCPICSREKSNNTELLRHYLQHFIKIEEARYMQLGVIHKDNYASLKEAMNVQTRS 123
Query: 640 NYILHS-EGASFTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYY--LELK 692
+YI E + FT +NC+ F S + + + + + +PP R Y +ELK
Sbjct: 124 SYIKKKVENSDFT-LNCS--FGSPLASFLAIESLKIYMDKPPNSKYQRRYALIELK 176
>Z49128-6|CAA88957.1| 621|Caenorhabditis elegans Hypothetical
protein M03C11.7 protein.
Length = 621
Score = 31.5 bits (68), Expect = 2.3
Identities = 19/86 (22%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 24 DDVKKLAKHFTKIINHPITEQSPS---IQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEK 80
+D+++ ++ ++++ HPI+ ++P+ Q+YLK T ++ ++++ EV T +
Sbjct: 341 NDMERYSQTVSELVEHPISMRAPTEPLTQQYLKVYLTTKEKKKIRRQNRKEVLKEKTEKI 400
Query: 81 KSSLQRQRFNSLPVSEVPELLKNEFI 106
+ L++ + +S + +L NE I
Sbjct: 401 RLGLEKAPEPKVKISNLMRVLGNEAI 426
>Z66523-7|CAA91416.2| 409|Caenorhabditis elegans Hypothetical
protein M05D6.7 protein.
Length = 409
Score = 31.1 bits (67), Expect = 3.0
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 148 KLKRESIDVAEPVILPNMSRRLSALECGEMPVLSLEQLRLRNPVEKLDRNLCSKLTNMLL 207
KL+ ES + E IL N LE G P S+ + L PV ++RN +T +
Sbjct: 257 KLRNESPEDFE--ILCNTKISHHYLE-GSPPGSSIHSVSLEKPV--IERNSFGNITQIRF 311
Query: 208 KVLP-------DTSEASIAEALKIYQ--ETYDKLCQDVSN-IDFTNQTSSV 248
++SEAS AE +K Y+ E + K+C + N I+ + + SV
Sbjct: 312 NPYDRAPFSCLNSSEASAAETIKFYEAYEKFSKICHNPDNSIEISLRPGSV 362
>Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical
protein F35H8.3 protein.
Length = 422
Score = 31.1 bits (67), Expect = 3.0
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 635 VYMKGNYILHSEGASFTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTF--RYYLELK 692
VY + +H + F C NC F + S+ HL +H +P C + R + +L+
Sbjct: 185 VYQRHIQEVHGDARPFRCFNCGMRFANKTSMTHHL--KDHSLLKPMFSCDYCPRIFSKLE 242
Query: 693 HNINMLAKNKYVYYSFGRFKCGVCDADIEEGENAKRHVLSPKH 735
+K ++ F R C C E+A RH S H
Sbjct: 243 ------SKTRHHKMHFTRSTCQTC-MRFFTTEDALRHHQSTAH 278
>Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical
protein T09A5.10 protein.
Length = 821
Score = 30.7 bits (66), Expect = 4.0
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 212 DTSEASIAEALKIYQETYDKLCQD-VSNIDFTNQTSSVAPIIMSIRDNVYQNFSADANKN 270
D S+ ++E L ++ET DKL Q+ + + N + S R+ + ++ +A +
Sbjct: 413 DNSKTMLSEELARFEETVDKLRQEKLEALSMANSRIDALRLEHSEREKMMKSTNARLQAD 472
Query: 271 TDNDENEQ 278
D + NE+
Sbjct: 473 LDEERNEK 480
>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical
protein C28G1.4 protein.
Length = 1081
Score = 30.7 bits (66), Expect = 4.0
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 399 CKQNIETAEATI-LHLLDEKHLAMLSDDLYLKMKATSPNGQIPEEWG---PKDLSWSKYL 454
C+ + TAEA + + +++ HL+ L +D+ +K ++ SP + + K L S+
Sbjct: 602 CQISTSTAEAELPMQAMEDFHLS-LKEDVDIKEESPSPKDNVADRHEISIEKTLEESRKE 660
Query: 455 ASVGKPVNNRDHVIIENFIKPSGKVGNFCT 484
+S G N D + + +K + + C+
Sbjct: 661 SSFGNSENGEDSAVKDEQVKKTKNENSQCS 690
>AL132848-1|CAB60388.2| 381|Caenorhabditis elegans Hypothetical
protein Y47H10A.2 protein.
Length = 381
Score = 30.7 bits (66), Expect = 4.0
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 8 ITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKR 67
I K S T +S+ L+D+ L +HF ++ R + QE K I+F+K
Sbjct: 136 IYKGKSSFTEISYLNLEDLIHLLQHFHELFAFDHVNLVMDHGRLFGDYQEVVKHILFRKC 195
Query: 68 DSVEV 72
VE+
Sbjct: 196 HYVEI 200
>AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein.
Length = 821
Score = 30.7 bits (66), Expect = 4.0
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 212 DTSEASIAEALKIYQETYDKLCQD-VSNIDFTNQTSSVAPIIMSIRDNVYQNFSADANKN 270
D S+ ++E L ++ET DKL Q+ + + N + S R+ + ++ +A +
Sbjct: 413 DNSKTMLSEELARFEETVDKLRQEKLEALSMANSRIDALRLEHSEREKMMKSTNARLQAD 472
Query: 271 TDNDENEQ 278
D + NE+
Sbjct: 473 LDEERNEK 480
>AF077536-7|AAT81208.1| 431|Caenorhabditis elegans Hypothetical
protein C16A11.2b protein.
Length = 431
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 94 VSEVPELLKNEFIAVENARQVHICTDCDVEIELNDEEPLMESLQKHFNLEVHLPKLKRES 153
+ ++ E++K + A ++ C +CDV + N E L ++ K+ ++ + K +RE
Sbjct: 176 LDQLAEIVKFFEVTQARADELRACAECDVRMAQNHENLLRQNRDKNGKMQKYCVK-QREI 234
Query: 154 ID 155
+D
Sbjct: 235 VD 236
>AF077536-6|AAT81207.1| 570|Caenorhabditis elegans Hypothetical
protein C16A11.2a protein.
Length = 570
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 94 VSEVPELLKNEFIAVENARQVHICTDCDVEIELNDEEPLMESLQKHFNLEVHLPKLKRES 153
+ ++ E++K + A ++ C +CDV + N E L ++ K+ ++ + K +RE
Sbjct: 315 LDQLAEIVKFFEVTQARADELRACAECDVRMAQNHENLLRQNRDKNGKMQKYCVK-QREI 373
Query: 154 ID 155
+D
Sbjct: 374 VD 375
>AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical
protein M151.4 protein.
Length = 591
Score = 30.7 bits (66), Expect = 4.0
Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 19/253 (7%)
Query: 45 SPSIQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKSSLQRQ---RFNSLPVSEVPELL 101
S QR L+ ET Q R S E++ T SS Q + N+ +E+ EL
Sbjct: 41 SAECQRLLQRSDETASTQQHQPRGSSELQASTTQLLDSSSQTEISMTENNALEAEINELK 100
Query: 102 KNEFIAVENARQVHICTDCDVEIELN-DEEPLMESLQKHFNLEVHLPKLKRESIDVAEPV 160
+ + ++ + T ++E LN ME+ QK L+VH KLK+E + E +
Sbjct: 101 QKVRMLTDDGQNKEKQTK-ELEGVLNVATTSAMEAAQK---LQVHQQKLKQEHKEAVETL 156
Query: 161 I--LPNMSRRLSA-LECGEMPVLSLEQLRLRNPVEKLDRNLCSKLTNMLLKVLPDTSEA- 216
+ L +L LE +E+L+ + E L + L E
Sbjct: 157 VEALRAEKEKLEKILEDARKKDDEIEELKKKVNSESSRATLADEAVQKLQTDKDKLEEEY 216
Query: 217 -----SIAEALKIYQETYDKLCQDVSNI--DFTNQTSSVAPIIMSIRDNVYQNFSADANK 269
+ +ALK QE +K+ +DV N + SV+ I+ + +
Sbjct: 217 MNDMRDLKKALKDNQEGLEKIAKDVKNKEGEIEELKKSVSSEIVKATEAAHATDQLRKKL 276
Query: 270 NTDNDENEQSPEK 282
DE+E+ E+
Sbjct: 277 QKQQDEHEKRVEQ 289
>Z81555-1|CAB04516.1| 242|Caenorhabditis elegans Hypothetical
protein F58E10.5 protein.
Length = 242
Score = 30.3 bits (65), Expect = 5.2
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 225 YQETYDKLCQ---DVSNIDFTNQTSSVAPIIMSIRDNVYQNFSADANKNTDNDENEQSPE 281
Y E Y ++ V N DFTNQ PI +++ Q+ ++ + N DN+EN PE
Sbjct: 85 YNENYQQMPDFQFPVQNFDFTNQFEFTTPI-----NDLQQSQTSINHTNPDNNENSM-PE 138
Query: 282 KP 283
P
Sbjct: 139 IP 140
>U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical
protein C52E12.6 protein.
Length = 346
Score = 30.3 bits (65), Expect = 5.2
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 538 CSICPEYVAVPSFA--NIVEHFESNEHME-TVAKLLRLAVNNEVDKQFAALNKIEDLKCV 594
C C E+ + ++ EH +H + ++ N E+++ +K ++L C
Sbjct: 177 CPDCHEFFLTQTALQKHMKEHKREEKHCPYKECRGIKFRFNRELNEHVRLQHKSKELSCC 236
Query: 595 YCNFDFRDNREAVKH 609
CN FR +KH
Sbjct: 237 VCNMVFRQLSAKIKH 251
>L17337-4|ABM74561.1| 217|Caenorhabditis elegans Hypothetical
protein ZK686.4 protein.
Length = 217
Score = 29.9 bits (64), Expect = 6.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 709 GRFKCGVCDADIEEGENAKRHVLSPKHRENMG 740
G F C VCD +++ N H+ H+ N+G
Sbjct: 88 GGFYCDVCDCVVKDSINFLDHINGKNHQRNIG 119
>L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical
protein C06E1.8 protein.
Length = 397
Score = 29.9 bits (64), Expect = 6.9
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 382 LSGHNITATASGLNCRLCKQNIETAEATILHLLDEKHLAML 422
LS H + A C +C+++I ++E+ H+ + H++ +
Sbjct: 66 LSRHRMQAHFKSYKCTVCRKDISSSESLRTHMFKQHHISRM 106
>AC006833-10|AAU87800.1| 262|Caenorhabditis elegans Enhancer of
hand mutation hnd-1protein 3, isoform a protein.
Length = 262
Score = 29.9 bits (64), Expect = 6.9
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 592 KCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANRADIISVYMKGNYILH-SEGASF 650
KC C+ F + +H V H R + MK + + H +G +F
Sbjct: 3 KCDICHQKFSNKTNLNRH---KVMHSGKKKFECQFCRRPFFRNDRMKEHMMTHIKKGNTF 59
Query: 651 TC--VNCNGVFNSIRSLLMHLVHAEHFAY-RPPAEC 683
C CN FNS SL H V +EH PA+C
Sbjct: 60 ECPITACNSKFNSFTSLQFH-VDSEHIIRGSSPAKC 94
>AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical
protein F12E12.5 protein.
Length = 330
Score = 29.9 bits (64), Expect = 6.9
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 592 KCVYCNFDFRDNREAVKHALSNVYHQSAVAET-KLNANRADIISVYMKGNYILHSEGASF 650
+C C F + +H +++ +S T + R D + ++ N++ E + F
Sbjct: 64 RCENCEKQFTNKPNLKRHQITHSGSKSKKCSTCQRTFFREDQLQRHLH-NHL--KERSHF 120
Query: 651 TC--VNCNGVFNSIRSLLMHLVHAEHFAYRPPAEC 683
C +NC+ F + HLV+ HF+Y A C
Sbjct: 121 DCPVLNCSMQFVFYEGVENHLVNHHHFSYSESAPC 155
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 29.5 bits (63), Expect = 9.1
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 648 ASFTCVNCNGVFNSIRSLLMH--LVHAE-HFA----YRPPAECTFRYYLELKHNINMLAK 700
A +C +C F S RSL H +H H ++ P T + ++E +HNI ++
Sbjct: 307 ARLSCKSCGKFFYSERSLSKHHRQIHMSGHVCVLCNHQMPKTVTVQEHMEKEHNIRLVFN 366
Query: 701 NKYVYYSFGRFKC 713
+ +SF +C
Sbjct: 367 CRCCNWSFATRRC 379
>Z79695-3|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
protein F27D4.6 protein.
Length = 1008
Score = 29.5 bits (63), Expect = 9.1
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 323 FCIACEYYTLRF-HYDSVLSHVFSETHVHNLSCIMQSDKHIPFLMSETTIESIKEMNAKF 381
FC+ +R + S + H+FS H N+ C+ S + F S T+ KE+
Sbjct: 607 FCVNLHSNQIRMGNMSSAIRHIFSFDHRQNMGCV-ASSSDLNFWKSFLTVAVTKEIPVIT 665
Query: 382 LSGHNITATASGLNCR 397
N T++ N +
Sbjct: 666 PQVQNTTSSPIAQNVK 681
>Z35595-8|CAA84640.1| 540|Caenorhabditis elegans Hypothetical
protein C01G6.7 protein.
Length = 540
Score = 29.5 bits (63), Expect = 9.1
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 429 KMKATSPNGQIPEEWGPKDLSWSKYLASVGKPVNNRDHVIIENFIKPSGKVGNFC---TC 485
K+K PN I + +G +L+++ +L S G P + ++ +K + G C
Sbjct: 321 KLKQLLPNVNIVQGYGMTELTFATHLQSPGSPDGSVGRLVPGTSMKVKKEDGTLCGPHEI 380
Query: 486 CDMTLKGPRQV 496
++ +KGP+ +
Sbjct: 381 GELWIKGPQMM 391
>U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical
protein C16A3.4 protein.
Length = 375
Score = 29.5 bits (63), Expect = 9.1
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 318 GKLAFFCIACE--YYTLRFHYDSVLSHVFSETHVHNLSCIMQSDKHIPFLMSETTIESIK 375
G F C+ C + T D H +E H +NL + +P + E E
Sbjct: 3 GSTGFTCVTCRVVFETAELQRD----HYKTEWHRYNLK---RQAAELPAIGIELFNEKAA 55
Query: 376 EMNAKFLSGHNITATASGLNCRLCKQNIETAEATILHLLDEKH 418
N + + A+ L C+ C+++I++ A H+ +KH
Sbjct: 56 SFNP---TKPVVAASVEPLYCKACRKSIKSENAMTDHVASKKH 95
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 29.5 bits (63), Expect = 9.1
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 648 ASFTCVNCNGVFNSIRSLLMH--LVHAE-HFA----YRPPAECTFRYYLELKHNINMLAK 700
A +C +C F S RSL H +H H ++ P T + ++E +HNI ++
Sbjct: 307 ARLSCKSCGKFFYSERSLSKHHRQIHMSGHVCVLCNHQMPKTVTVQEHMEKEHNIRLVFN 366
Query: 701 NKYVYYSFGRFKC 713
+ +SF +C
Sbjct: 367 CRCCNWSFATRRC 379
>AC006833-12|AAF60942.1| 218|Caenorhabditis elegans Enhancer of
hand mutation hnd-1protein 3, isoform b protein.
Length = 218
Score = 29.5 bits (63), Expect = 9.1
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 637 MKGNYILH-SEGASFTC--VNCNGVFNSIRSLLMHLVHAEHFAY-RPPAEC 683
MK + + H +G +F C CN FNS SL H V +EH PA+C
Sbjct: 1 MKEHMMTHIKKGNTFECPITACNSKFNSFTSLQFH-VDSEHIIRGSSPAKC 50
>AC006833-11|AAU87801.1| 175|Caenorhabditis elegans Enhancer of
hand mutation hnd-1protein 3, isoform c protein.
Length = 175
Score = 29.5 bits (63), Expect = 9.1
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 637 MKGNYILH-SEGASFTC--VNCNGVFNSIRSLLMHLVHAEHFAY-RPPAEC 683
MK + + H +G +F C CN FNS SL H V +EH PA+C
Sbjct: 1 MKEHMMTHIKKGNTFECPITACNSKFNSFTSLQFH-VDSEHIIRGSSPAKC 50
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.133 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,447,358
Number of Sequences: 27539
Number of extensions: 878981
Number of successful extensions: 3173
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 3139
Number of HSP's gapped (non-prelim): 56
length of query: 752
length of database: 12,573,161
effective HSP length: 87
effective length of query: 665
effective length of database: 10,177,268
effective search space: 6767883220
effective search space used: 6767883220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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