GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001828-TA|BGIBMGA001828-PA|IPR007087|Zinc finger,
C2H2-type
         (752 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    26   1.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    26   1.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   1.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   4.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   4.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    24   5.2  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   9.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   9.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   9.1  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 186 RLRNPVEKLDRNLCSKLTNMLLKVLPDTSEASIAEALKIYQETYDKLCQDVSNIDFTNQT 245
           +L N  EKL     S+      +     S  +  E  K Y+ET  +  QD +  + + + 
Sbjct: 21  KLHNEKEKLLEERTSRKRYSRSREREQKSYKNEREYRK-YRETSKERSQDRTERETSKEP 79

Query: 246 SSVAPIIMSIRDNVYQNFSADANKNTDNDEN 276
             ++ +  + + + Y N++ + N N +N+ N
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNNNYNNNYN 110


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 186 RLRNPVEKLDRNLCSKLTNMLLKVLPDTSEASIAEALKIYQETYDKLCQDVSNIDFTNQT 245
           +L N  EKL     S+      +     S  +  E  K Y+ET  +  QD +  + + + 
Sbjct: 21  KLHNEKEKLLEERTSRKRYSRSREREQKSYKNEREYRK-YRETSKERSQDRTERETSKEP 79

Query: 246 SSVAPIIMSIRDNVYQNFSADANKNTDNDEN 276
             ++ +  + + + Y N++ + N N +N+ N
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNNNYNNNYN 110


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 650 FTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKHNINMLAKNKYVYY 706
           F C  CN +  S+  L  H+   ++   RP  E        +  ++N L  +K +Y+
Sbjct: 3   FRCEPCNKILTSLTRLRRHI---QNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYH 56


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 637 MKGNYILHSEGASFTCVNCNGVFNSIRSLLMHL-VHAEHFAYRPPAECTFRYYLELKHN 694
           +K + + H     + C  C+  F S +++ +H+  H++      P +      +E+  N
Sbjct: 247 LKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPIEPEIEISQN 305


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 691 LKHNINMLAKNKYVYYSFG 709
           L+H++N++ + KY+ Y FG
Sbjct: 31  LEHSMNVIHEWKYIDYDFG 49


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 649 SFTCVNCNGVFNSIRSLLMHL 669
           SF+C  C  V+ S+ +L MH+
Sbjct: 16  SFSCKYCEKVYVSLGALKMHI 36


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 636 YMKGNYILHSEGASFTCVNCNGVFNSIRSLLMHL-VHAEHFAY 677
           ++K +  LH+    + C +C+  F  + +L  HL VH     Y
Sbjct: 24  HLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPY 66


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 644 HSEGASFTCVNCNGVFNSIRSLLMHLVHAEH 674
           HS    + C NC        SL +HL    H
Sbjct: 39  HSNVYQYRCANCTYATKYCHSLKLHLRKYSH 69


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 718 ADIEEGENAKRHVLSPKHRENMGATYINEDAS 749
           A++ EG N +++VL    R +  A Y+    S
Sbjct: 440 ANVAEGRNQRKNVLDRLFRMDRDAVYLQPGMS 471


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,548
Number of Sequences: 429
Number of extensions: 10505
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 13
length of query: 752
length of database: 140,377
effective HSP length: 63
effective length of query: 689
effective length of database: 113,350
effective search space: 78098150
effective search space used: 78098150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)