Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001827-TA|BGIBMGA001827-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(334 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 52 5e-07
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 50 2e-06
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 46 3e-05
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 46 4e-05
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 44 1e-04
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 44 1e-04
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 43 3e-04
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 43 3e-04
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 43 3e-04
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 43 3e-04
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 43 3e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 43 3e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 42 4e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 42 4e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 42 4e-04
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 42 8e-04
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 42 8e-04
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 41 0.001
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 40 0.002
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 40 0.002
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 39 0.005
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 39 0.005
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 39 0.005
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 39 0.005
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 38 0.007
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 38 0.009
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 38 0.009
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 37 0.017
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 37 0.017
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 37 0.017
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 37 0.017
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 37 0.022
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 37 0.022
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 37 0.022
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 37 0.022
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 37 0.022
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 36 0.029
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 36 0.029
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 36 0.029
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.029
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 36 0.038
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 36 0.038
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 36 0.038
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 35 0.067
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 35 0.067
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 35 0.067
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 35 0.067
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 35 0.088
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 35 0.088
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 35 0.088
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 34 0.12
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 34 0.12
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 34 0.15
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 34 0.15
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 34 0.15
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 34 0.15
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.20
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.20
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.20
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 33 0.20
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 33 0.20
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 33 0.20
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 33 0.27
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 33 0.36
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.36
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 32 0.47
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 32 0.62
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 32 0.62
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 32 0.62
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 32 0.62
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 32 0.62
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 32 0.62
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 0.62
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 31 0.82
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 31 0.82
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 31 0.82
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 31 1.1
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 31 1.1
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 31 1.1
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 31 1.1
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 31 1.1
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 31 1.1
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 31 1.4
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 31 1.4
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 30 1.9
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 30 1.9
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 30 1.9
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc... 30 1.9
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 30 1.9
At5g51300.2 68418.m06360 splicing factor-related contains simila... 30 2.5
At5g51300.1 68418.m06359 splicing factor-related contains simila... 30 2.5
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 30 2.5
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 30 2.5
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 30 2.5
At2g16090.1 68415.m01845 zinc finger protein-related contains si... 30 2.5
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 30 2.5
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 29 3.3
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 29 3.3
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 29 3.3
At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ... 29 3.3
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 29 4.4
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 29 4.4
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 29 4.4
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 29 4.4
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 29 4.4
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 29 4.4
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 4.4
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 29 4.4
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 29 4.4
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 29 4.4
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 29 4.4
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 29 4.4
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 29 4.4
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 29 5.8
At3g19720.2 68416.m02498 dynamin family protein identical to cDN... 28 7.7
At3g19720.1 68416.m02497 dynamin family protein identical to cDN... 28 7.7
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 28 7.7
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 28 7.7
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 52.0 bits (119), Expect = 5e-07
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 9/186 (4%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
K+FVGG+ + DED++ F +G V K P+G+ F++F D S + ++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGE--VSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVL 64
Query: 138 EACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPRPLK 197
+ + + + + + ++ V R L + + K +FVGG+P L
Sbjct: 65 QEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRS--SGGDAYNKTKKIFVGGLPPTLT 122
Query: 198 AVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDID 257
E + +YG V I D P+G G V+F ++ + + + F H
Sbjct: 123 DEEFRQYFE-VYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTF----HDLSG 177
Query: 258 KRVEVK 263
K+VEVK
Sbjct: 178 KQVEVK 183
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 53 VSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAE 112
VS +S S G + + ++K+FVGGLPP + ++E F +GP V D +
Sbjct: 88 VSGRTGNLNTSRSSGGDAYNK--TKKIFVGGLPPTLTDEEFRQYFEVYGP-VTDVAIMYD 144
Query: 113 SKSYFPPKGYAFLLFQDESSVAALMEACITD 143
+ P+G+ F+ F E +V +++ D
Sbjct: 145 QATN-RPRGFGFVSFDSEDAVDSVLHKTFHD 174
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 50.0 bits (114), Expect = 2e-06
Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 9/205 (4%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
K+F+GG+ D DE+ + F FG ++ K+ P+G+ F+ F D + + ++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVL--QVTVMREKATGRPRGFGFVAFSDPAVIDRVL 64
Query: 138 EACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPRPLK 197
+ D + V R++ +A D+ + +K +FVGG+P L
Sbjct: 65 QD-KHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKK-IFVGGLPPALT 122
Query: 198 AVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDID 257
+ E + YG V A I D + P+G G V+F ++ S + F L
Sbjct: 123 SDEFRAYFE-TYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLN----G 177
Query: 258 KRVEVKPYVLDDQMCDECAGARCGS 282
K+VEVK + D +G GS
Sbjct: 178 KQVEVKRALPKDANPGIASGGGRGS 202
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAA 135
++K+FVGGLPP + DE + F +GP V D + + P+G+ F+ F E SV
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGP-VSDAVIMIDQTTQ-RPRGFGFVSFDSEDSVDL 166
Query: 136 LMEACITD 143
++ D
Sbjct: 167 VLHKTFHD 174
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 46.4 bits (105), Expect = 3e-05
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 63 SPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPL---VVDWPHKAESKSYFPP 119
SP G+ G R ++K+FVGGLP I E E + F +FG + VV + H + P
Sbjct: 109 SPSHGGNGGGAR-TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQR-----P 162
Query: 120 KGYAFLLFQDESSV 133
+G+ F+ F E SV
Sbjct: 163 RGFGFITFDSEESV 176
Score = 46.0 bits (104), Expect = 4e-05
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 16/191 (8%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDES-SVAAL 136
K+F+GG+ D DE+ + F ++G LV + + +G+ F++F D S + +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGR--ARGFGFIVFADPSVAERVI 73
Query: 137 MEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDP----RKTVFVGGV 192
M+ I D + + P RD ++ R A ++ S + K +FVGG+
Sbjct: 74 MDKHIIDGRTVEAKKAVP--RDDQQVLK--RHASPMHLISPSHGGNGGGARTKKIFVGGL 129
Query: 193 PRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQ 252
P + E D+ +G + + D + P+G G + F +++S + F +L
Sbjct: 130 PSSITEAEFKNYFDQ-FGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELN 188
Query: 253 HGDIDKRVEVK 263
K VEVK
Sbjct: 189 ----GKMVEVK 195
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 46.0 bits (104), Expect = 4e-05
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 49 LSMCVSALGSPARSSPVSAGSEH--GERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVD 106
++ C A P + +PV A ++H E RK++V + DID ++ F RFG + +
Sbjct: 197 MTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGE-IEE 255
Query: 107 WPHKAESKSYFPPKGYAFLLFQD-ESSVAALMEACITDEDKLYLCVSSPTIRDKPVQIR 164
P + K+ PKG+A +++ ES+ AL E T E + C + D P Q++
Sbjct: 256 GPLGLD-KATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA---NDGPKQVK 310
Score = 32.7 bits (71), Expect = 0.36
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVA-A 135
RK+FV GL D D + +F+++G + D + S KGY F+LF+ S A
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGE-IEDCKCVVDKVSG-QSKGYGFILFKSRSGARNA 185
Query: 136 LMEACITDEDKLYLC--VSSPTIRDKPV-----QIRPWRLADADFVLDASMPLDPRK 185
L + ++ C S ++ PV P + +V + S +DP+K
Sbjct: 186 LKQPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQK 242
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 68 GSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFG---PLVVDWPHKAESKSYFPPKGYAF 124
GS G +RK+FVGGLP + E + + F +FG +VV + H + P+G+ F
Sbjct: 99 GSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQR-----PRGFGF 153
Query: 125 LLFQDESSVAALM 137
+ + E +V ++
Sbjct: 154 ITYDSEEAVEKVL 166
Score = 35.9 bits (79), Expect = 0.038
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 13/187 (6%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
K+F+GG+ D +E+ + F FG ++ K ++ +G+ F++F D A+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILK--DRTTGRARGFGFVVFAD----PAVA 60
Query: 138 EACITDEDKL-YLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPRPL 196
E IT++ + V + + Q R + P RK +FVGG+P +
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRK-IFVGGLPSSV 119
Query: 197 KAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDI 256
+ ++ +G + D + P+G G + + ++++ + F +L
Sbjct: 120 TESDFKTYFEQ-FGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELN---- 174
Query: 257 DKRVEVK 263
K VEVK
Sbjct: 175 GKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 68 GSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFG---PLVVDWPHKAESKSYFPPKGYAF 124
GS G +RK+FVGGLP + E + + F +FG +VV + H + P+G+ F
Sbjct: 99 GSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQR-----PRGFGF 153
Query: 125 LLFQDESSVAALM 137
+ + E +V ++
Sbjct: 154 ITYDSEEAVEKVL 166
Score = 35.9 bits (79), Expect = 0.038
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 13/187 (6%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
K+F+GG+ D +E+ + F FG ++ K ++ +G+ F++F D A+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILK--DRTTGRARGFGFVVFAD----PAVA 60
Query: 138 EACITDEDKL-YLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPRPL 196
E IT++ + V + + Q R + P RK +FVGG+P +
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRK-IFVGGLPSSV 119
Query: 197 KAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDI 256
+ ++ +G + D + P+G G + + ++++ + F +L
Sbjct: 120 TESDFKTYFEQ-FGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELN---- 174
Query: 257 DKRVEVK 263
K VEVK
Sbjct: 175 GKMVEVK 181
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 42.7 bits (96), Expect = 3e-04
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 15/189 (7%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQDES-SVA 134
K+F+GG+ D DE+ + F +G +V V +A ++ +G+ F++F D S
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRA----RGFGFIVFADPCVSER 62
Query: 135 ALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPR 194
+M+ I D + + P RD Q+ + + K +FVGG+P
Sbjct: 63 VIMDKHIIDGRTVEAKKAVP--RDDQ-QVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPS 119
Query: 195 PLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHG 254
+ E D+ +G + + D + P+G G + F + + + F +L
Sbjct: 120 SITEEEFKNYFDQ-FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELN-- 176
Query: 255 DIDKRVEVK 263
K VEVK
Sbjct: 177 --GKLVEVK 183
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 12/74 (16%)
Query: 63 SPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPL---VVDWPHKAESKSYFPP 119
SPV G G R ++K+FVGGLP I E+E + F +FG + VV + H + P
Sbjct: 100 SPVHGG---GGR-TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQR-----P 150
Query: 120 KGYAFLLFQDESSV 133
+G+ F+ F + +V
Sbjct: 151 RGFGFITFDSDDAV 164
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 42.7 bits (96), Expect = 3e-04
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 15/189 (7%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQDES-SVA 134
K+F+GG+ D DE+ + F +G +V V +A ++ +G+ F++F D S
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRA----RGFGFIVFADPCVSER 62
Query: 135 ALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPR 194
+M+ I D + + P RD Q+ + + K +FVGG+P
Sbjct: 63 VIMDKHIIDGRTVEAKKAVP--RDDQ-QVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPS 119
Query: 195 PLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHG 254
+ E D+ +G + + D + P+G G + F + + + F +L
Sbjct: 120 SITEEEFKNYFDQ-FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELN-- 176
Query: 255 DIDKRVEVK 263
K VEVK
Sbjct: 177 --GKLVEVK 183
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 12/74 (16%)
Query: 63 SPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPL---VVDWPHKAESKSYFPP 119
SPV G G R ++K+FVGGLP I E+E + F +FG + VV + H + P
Sbjct: 100 SPVHGG---GGR-TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQR-----P 150
Query: 120 KGYAFLLFQDESSV 133
+G+ F+ F + +V
Sbjct: 151 RGFGFITFDSDDAV 164
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 42.7 bits (96), Expect = 3e-04
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 15/189 (7%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQDES-SVA 134
K+F+GG+ D DE+ + F +G +V V +A ++ +G+ F++F D S
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRA----RGFGFIVFADPCVSER 62
Query: 135 ALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPR 194
+M+ I D + + P RD Q+ + + K +FVGG+P
Sbjct: 63 VIMDKHIIDGRTVEAKKAVP--RDDQ-QVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPS 119
Query: 195 PLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHG 254
+ E D+ +G + + D + P+G G + F + + + F +L
Sbjct: 120 SITEEEFKNYFDQ-FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELN-- 176
Query: 255 DIDKRVEVK 263
K VEVK
Sbjct: 177 --GKLVEVK 183
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 12/74 (16%)
Query: 63 SPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPL---VVDWPHKAESKSYFPP 119
SPV G G R ++K+FVGGLP I E+E + F +FG + VV + H + P
Sbjct: 100 SPVHGG---GGR-TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQR-----P 150
Query: 120 KGYAFLLFQDESSV 133
+G+ F+ F + +V
Sbjct: 151 RGFGFITFDSDDAV 164
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 74 RFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
R SR ++VG LP DI E E+ F ++GP+V + + K P GYAF+ F+D
Sbjct: 4 RSSRTIYVGNLPGDIREREVEDLFSKYGPVV-----QIDLKIPPRPPGYAFVEFED 54
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 74 RFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
R SR ++VG LP DI E E+ F ++GP+V + + K P GYAF+ F+D
Sbjct: 4 RSSRTIYVGNLPGDIREREVEDLFSKYGPVV-----QIDLKIPPRPPGYAFVEFED 54
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYF-PPKGYAFLLFQDESSVA 134
+RK+FVGGLPP ++EDE+ + F +G ++ H+ + +G+ F+ FQ E SV
Sbjct: 156 TRKIFVGGLPPLLEEDELKNYFCVYGDII---EHQIMYDHHTGRSRGFGFVTFQTEDSVD 212
Query: 135 AL 136
L
Sbjct: 213 RL 214
Score = 37.5 bits (83), Expect = 0.013
Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 21/186 (11%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
K+FVGG+ + + + F +FG VVD + + P+G+ F+ F D S+VA
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGE-VVDSVIMTD-RITGNPRGFGFVTFAD-SAVAEK- 122
Query: 138 EACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPRPLK 197
+ +ED + I D+ V ++ L D D RK +FVGG+P L+
Sbjct: 123 ---VLEEDHV--------IDDRKVDLKR-TLPRGDKDTDIKAVSKTRK-IFVGGLPPLLE 169
Query: 198 AVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDID 257
EL +YG + I D +G G V F + S S V H D
Sbjct: 170 EDELKNYF-CVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKV---HELGD 225
Query: 258 KRVEVK 263
K+VE+K
Sbjct: 226 KQVEIK 231
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 74 RFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
R SR V+VG LP DI E E+ F ++GP+V + + K P GYAF+ F D
Sbjct: 4 RSSRTVYVGNLPGDIREREVEDLFSKYGPVV-----QIDLKVPPRPPGYAFVEFDD 54
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 74 RFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
R SR V+VG LP DI E E+ F ++GP+V + + K P GYAF+ F D
Sbjct: 4 RSSRTVYVGNLPGDIREREVEDLFSKYGPVV-----QIDLKVPPRPPGYAFVEFDD 54
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 74 RFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
R SR V+VG LP DI E E+ F ++GP+V + + K P GYAF+ F D
Sbjct: 4 RSSRTVYVGNLPGDIREREVEDLFSKYGPVV-----QIDLKVPPRPPGYAFVEFDD 54
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 41.5 bits (93), Expect = 8e-04
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 61 RSSPVSAGSEHGERF-SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPP 119
R+ P AG + ++K+FVGG+P + EDE+ F ++G +V + +
Sbjct: 92 RTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETN--RS 149
Query: 120 KGYAFLLFQDESSVAALM 137
+G+ F++F E V L+
Sbjct: 150 RGFGFVIFDSEEVVDELL 167
Score = 37.5 bits (83), Expect = 0.013
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 19/161 (11%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
K+F+GGL D F ++G + + + P+G+ F+ F D S V ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMR--DRHTGQPRGFGFITFADPSVVDKVI 77
Query: 138 EACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPRPLK 197
E + I K V+I+ R + S + +K +FVGG+P +
Sbjct: 78 E-------------DTHVINGKQVEIK--RTIPKGAGGNQSKDIKTKK-IFVGGIPSTVT 121
Query: 198 AVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQ 238
EL + YG V + D E +G G V F +++
Sbjct: 122 EDELKDFFAK-YGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 41.5 bits (93), Expect = 8e-04
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 61 RSSPVSAGSEHGERF-SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPP 119
R+ P AG + ++K+FVGG+P + EDE+ F ++G +V + +
Sbjct: 92 RTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETN--RS 149
Query: 120 KGYAFLLFQDESSVAALM 137
+G+ F++F E V L+
Sbjct: 150 RGFGFVIFDSEEVVDELL 167
Score = 37.5 bits (83), Expect = 0.013
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 19/161 (11%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
K+F+GGL D F ++G + + + P+G+ F+ F D S V ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMR--DRHTGQPRGFGFITFADPSVVDKVI 77
Query: 138 EACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPRPLK 197
E + I K V+I+ R + S + +K +FVGG+P +
Sbjct: 78 E-------------DTHVINGKQVEIK--RTIPKGAGGNQSKDIKTKK-IFVGGIPSTVT 121
Query: 198 AVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQ 238
EL + YG V + D E +G G V F +++
Sbjct: 122 EDELKDFFAK-YGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 74 RFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
R++R ++VG LP DI + E+ F ++GP +VD K + P GYAF+ F+D
Sbjct: 4 RWNRTIYVGNLPGDIRKCEVEDLFYKYGP-IVDIDLKIPPR----PPGYAFVEFED 54
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDESSVA 134
++K+FVGGL + E+E S F RFG V H + P+G+ F+ + E SV
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNR---PRGFGFVTYDSEDSVE 175
Query: 135 ALMEA 139
+M++
Sbjct: 176 VVMQS 180
Score = 39.5 bits (88), Expect = 0.003
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 15/194 (7%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVA-AL 136
K+FVGG+ + E+ + F R+G ++ A+ K P+G+ F+ F ++ V AL
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLE--AVVAKEKVTGKPRGFGFVRFANDCDVVKAL 64
Query: 137 MEA--CITDEDKLYLCVSSPTIRDKPVQI----RPWRLADADFVLDASMPLDPR-KTVFV 189
+ + + + + +P + R + + +S + R K +FV
Sbjct: 65 RDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFV 124
Query: 190 GGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFV 249
GG+ E +R +G + D P+G G V + ++ S + + F
Sbjct: 125 GGLSSNTTEEEFKSYFER-FGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFH 183
Query: 250 QLQHGDIDKRVEVK 263
+L DKRVEVK
Sbjct: 184 ELS----DKRVEVK 193
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 184 RKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAA 243
R +FVGG+ + L R YG V A + + P+G G V F+N + A
Sbjct: 5 RYKLFVGGIAKETSEEALKQYFSR-YGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63
Query: 244 I-SARFVQLQHGDIDKRV 260
+ F+ + D+ K +
Sbjct: 64 LRDTHFILGKPVDVRKAI 81
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 65 VSAGSEHGERF-SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYA 123
+ GS F ++K+FVGG+P +D+DE F +FG L + S +G+
Sbjct: 117 IPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTG--RSRGFG 174
Query: 124 FLLFQDESSVAALM 137
F+ ++ E V L+
Sbjct: 175 FVTYESEDMVDHLL 188
Score = 31.9 bits (69), Expect = 0.62
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 61 RSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPK 120
+S P S G G + K+FVGGL + E F ++G + D + K+ P+
Sbjct: 29 KSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFGKYGE-ITDSVIMKDRKT-GQPR 83
Query: 121 GYAFLLFQDESSVAALME 138
G+ F+ + D S V +++
Sbjct: 84 GFGFVTYADSSVVDKVIQ 101
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 72 GERFSRKVFVGGLPPDIDEDEITSSFRRFG---PLVVDWPHKAESKSYFPPKGYAFLLFQ 128
G S+K+FVGGL + E E F +FG +VV + H+ + P+G+ F+ +
Sbjct: 28 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQR-----PRGFGFISYD 82
Query: 129 DESSVAALME 138
E +V +++
Sbjct: 83 SEEAVDKVLQ 92
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 72 GERFSRKVFVGGLPPDIDEDEITSSFRRFG---PLVVDWPHKAESKSYFPPKGYAFLLFQ 128
G S+K+FVGGL + E E F +FG +VV + H+ + P+G+ F+ +
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQR-----PRGFGFISYD 155
Query: 129 DESSVAALME 138
E +V +++
Sbjct: 156 SEEAVDKVLQ 165
Score = 35.1 bits (77), Expect = 0.067
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 73 ERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQDE 130
E S K+F+GG+ + ED + F FG ++ V +A ++ +G+ F++F D
Sbjct: 2 EMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRA----RGFGFVVFAD- 56
Query: 131 SSVAALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVG 190
+VA + D + RD V ++ L S K +FVG
Sbjct: 57 PNVAERVVLLKHIIDGKIVEAKKAVPRDDHVVFN-----KSNSSLQGSPGPSNSKKIFVG 111
Query: 191 GVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQ 250
G+ + E + +G + + D + P+G G +++ ++++ + F +
Sbjct: 112 GLASSVTEAEFKKYFAQ-FGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHE 170
Query: 251 LQHGDIDKRVEVKPYVLDD 269
L K VEVK V D
Sbjct: 171 LN----GKMVEVKLAVPKD 185
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 72 GERFSRKVFVGGLPPDIDEDEITSSFRRFG---PLVVDWPHKAESKSYFPPKGYAFLLFQ 128
G S+K+FVGGL + E E F +FG +VV + H+ + P+G+ F+ +
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQR-----PRGFGFISYD 155
Query: 129 DESSVAALME 138
E +V +++
Sbjct: 156 SEEAVDKVLQ 165
Score = 35.1 bits (77), Expect = 0.067
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 73 ERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQDE 130
E S K+F+GG+ + ED + F FG ++ V +A ++ +G+ F++F D
Sbjct: 2 EMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRA----RGFGFVVFAD- 56
Query: 131 SSVAALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVG 190
+VA + D + RD V ++ L S K +FVG
Sbjct: 57 PNVAERVVLLKHIIDGKIVEAKKAVPRDDHVVFN-----KSNSSLQGSPGPSNSKKIFVG 111
Query: 191 GVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQ 250
G+ + E + +G + + D + P+G G +++ ++++ + F +
Sbjct: 112 GLASSVTEAEFKKYFAQ-FGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHE 170
Query: 251 LQHGDIDKRVEVKPYVLDD 269
L K VEVK V D
Sbjct: 171 LN----GKMVEVKLAVPKD 185
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 65 VSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAF 124
+S+GS G ++FVGGLP E +I FGPL + + + KGYAF
Sbjct: 363 LSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPL--RGFNLVKDRETGNSKGYAF 420
Query: 125 LLFQDES 131
++QD S
Sbjct: 421 CVYQDPS 427
Score = 36.3 bits (80), Expect = 0.029
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 64 PVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSF 97
PV A ++ R +R+V+VGGLPP +E +++ F
Sbjct: 242 PVQAMTQQATRHARRVYVGGLPPTANEQSVSTFF 275
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 38.3 bits (85), Expect = 0.007
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 69 SEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV--VDWPHKAESKSYFPPKGYAFLL 126
S G+ KVFVGGL + DE+ F +FG ++ V KA KS KGY F+
Sbjct: 9 SPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKS----KGYGFVT 64
Query: 127 FQDESS 132
F+D S
Sbjct: 65 FRDSDS 70
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 37.9 bits (84), Expect = 0.009
Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 6/188 (3%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALME 138
VFVG L PD+ + +T +F+ V ++ KGY F+ F DES M
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYS-SVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 139 ACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPRPLKA 198
+ P KP+ ++P + S P + T+FVG V + +
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTN--TTIFVGAVDQSVTE 291
Query: 199 VELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYI--AAISARFVQLQHGDI 256
+L + + +G + + I + + A R S + + + ++L G
Sbjct: 292 DDLKSVFGQ-FGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRS 350
Query: 257 DKRVEVKP 264
+ +P
Sbjct: 351 PSNKQTQP 358
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 59 PARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV 104
PA S + + +FVG + + ED++ S F +FG LV
Sbjct: 260 PASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELV 305
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESS 132
S V+VGG+P D+ E ++ + F ++G +VD + K KG+AFL ++D+ S
Sbjct: 35 SAYVYVGGIPFDLTEGDLLAVFSQYGE-IVD-VNLIRDKGTGKSKGFAFLAYEDQRS 89
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 37.1 bits (82), Expect = 0.017
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLF-QDESSVA 134
SR ++VG LP I E E+ F RFG L ES ++ P + YAF+ F DE + A
Sbjct: 22 SRHLWVGNLPHGILERELADRFLRFGEL--------ESLAFQPGRSYAFVNFNHDEDAFA 73
Query: 135 AL 136
A+
Sbjct: 74 AI 75
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 37.1 bits (82), Expect = 0.017
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 74 RFSRKVFVGGLPPDIDEDEITSSFRRFGPLV 104
RFSR ++VG LP DI E EI F ++G +V
Sbjct: 4 RFSRSIYVGNLPGDIREHEIEDIFYKYGRIV 34
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 37.1 bits (82), Expect = 0.017
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDE 130
+V+VG L P + E E+ F+ FG L W + P GYAFL F DE
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARR-------PPGYAFLEFDDE 48
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 37.1 bits (82), Expect = 0.017
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDE 130
+V+VG L P + E E+ F+ FG L W + P GYAFL F DE
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARR-------PPGYAFLEFDDE 48
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 36.7 bits (81), Expect = 0.022
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 73 ERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDES 131
ER K+FVG LP ++ E E+ S F ++G + + A+ S KG AFL ++ +
Sbjct: 102 ERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTS----KGCAFLKYETKE 157
Query: 132 SVAALMEA 139
+ ME+
Sbjct: 158 QAVSAMES 165
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 36.7 bits (81), Expect = 0.022
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 73 ERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDES 131
ER K+FVG LP ++ E E+ S F ++G + + A+ S KG AFL ++ +
Sbjct: 102 ERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTS----KGCAFLKYETKE 157
Query: 132 SVAALMEA 139
+ ME+
Sbjct: 158 QAVSAMES 165
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 36.7 bits (81), Expect = 0.022
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 57 GSPARSSPVSAGSEHG--ERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESK 114
G+P ++ VSA ++H E +K++V + ++D ++ F +FG + + P + K
Sbjct: 223 GAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGE-IEEGPLGLD-K 280
Query: 115 SYFPPKGYAFLLFQ-DESSVAALMEACITDEDKLYLC 150
PKG+ +++ ES+ AL E T E + C
Sbjct: 281 YTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHC 317
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 36.7 bits (81), Expect = 0.022
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 57 GSPARSSPVSAGSEHG--ERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESK 114
G+P ++ VSA ++H E +K++V + ++D ++ F +FG + + P + K
Sbjct: 223 GAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGE-IEEGPLGLD-K 280
Query: 115 SYFPPKGYAFLLFQ-DESSVAALMEACITDEDKLYLC 150
PKG+ +++ ES+ AL E T E + C
Sbjct: 281 YTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHC 317
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 36.7 bits (81), Expect = 0.022
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 57 GSPARSSPVSAGSEHG--ERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESK 114
G+P ++ VSA ++H E +K++V + ++D ++ F +FG + + P + K
Sbjct: 223 GAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGE-IEEGPLGLD-K 280
Query: 115 SYFPPKGYAFLLFQ-DESSVAALMEACITDEDKLYLC 150
PKG+ +++ ES+ AL E T E + C
Sbjct: 281 YTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHC 317
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 36.3 bits (80), Expect = 0.029
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 69 SEHGERFSR---KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFL 125
S H + F K++VGGLP ++ + + F+RFG ++ + + +GY F+
Sbjct: 2 SHHHQNFDTTFTKIYVGGLPWTTRKEGLINFFKRFGEII--HVNVVCDRETDRSQGYGFV 59
Query: 126 LFQD-ESSVAALMEACITDEDKLYLC-VSSPTIRDKPVQIRPWRL 168
F+D ES+ A + T E ++ C ++ + KP Q +P L
Sbjct: 60 TFKDAESATRACKDPNPTIEGRITNCKLAFVGAKVKPNQSQPSNL 104
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 36.3 bits (80), Expect = 0.029
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 70 EHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV---VDWPHKAESK 114
+ G+ + ++VG L P +DE+ + +F RFGP+ + WP E K
Sbjct: 172 DDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEK 219
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 36.3 bits (80), Expect = 0.029
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 50 SMCVSALGSPARSSPVSAGSEH-GERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV 104
S V G + + GS+ GE + +FVGG+ PD+ ++++ F +FG +V
Sbjct: 293 SQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVV 348
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 36.3 bits (80), Expect = 0.029
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
+V+VG L P + E E+ FR FG + W + P GYAFL F+D
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARR-------PPGYAFLDFED 47
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.9 bits (79), Expect = 0.038
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
+V+VG L P + E E+ FR FG + W + P GYAFL F+D
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARR-------PPGYAFLDFED 47
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 35.9 bits (79), Expect = 0.038
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDE 130
K++VGG+P EDEI S FR G ++ VD + E ++ G AF+ F E
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAF---SGIAFITFDTE 212
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 59 PARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFP 118
P R + E + ++R V++G L D E +I + F V++ ++K
Sbjct: 245 PRRKTSSGFAPEMVDGYNR-VYIGNLAWDTTERDIR---KLFSDCVINSVRLGKNKETGE 300
Query: 119 PKGYAFLLFQDESSVAALME 138
KGYA + F+D SVA ++
Sbjct: 301 FKGYAHVDFKDSVSVAIALK 320
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.9 bits (79), Expect = 0.038
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 54 SALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAES 113
S L + + SSP S+ S G + K++V GL ED + +F +FG L+ +
Sbjct: 58 SCLSTDSSSSPPSSSS--GPK--TKLYVSGLSFRTTEDTLRDTFEQFGNLI--HMNMVMD 111
Query: 114 KSYFPPKGYAFLLFQDE 130
K PKG+AFL ++ E
Sbjct: 112 KVANRPKGFAFLRYETE 128
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 35.1 bits (77), Expect = 0.067
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 63 SPVSAGSEHGERFS----RKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFP 118
S A +E G F + V+V LP DI EI F+ FG + D K
Sbjct: 239 SDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVM- 297
Query: 119 PKGYAFLLFQDESSVAALMEA 139
YAF+ F+D +SV ++A
Sbjct: 298 GVCYAFVEFEDMTSVENAIKA 318
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 35.1 bits (77), Expect = 0.067
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 63 SPVSAGSEHGERFS----RKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFP 118
S A +E G F + V+V LP DI EI F+ FG + D K
Sbjct: 298 SDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVM- 356
Query: 119 PKGYAFLLFQDESSVAALMEA 139
YAF+ F+D +SV ++A
Sbjct: 357 GVCYAFVEFEDMTSVENAIKA 377
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 35.1 bits (77), Expect = 0.067
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGP----LVVDWPHKAESKSYFPPKGYAFLLFQDESSV 133
K+FVG LP I + E FR+FGP +++ H+ E + G+ F+++ E S
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNA-----GFGFIIYAAEKSA 220
Query: 134 AALME 138
+E
Sbjct: 221 MKAVE 225
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 35.1 bits (77), Expect = 0.067
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDESSVAAL 136
++FV +P + E + S F R+G + + P SK + +G F+ F SV L
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQH---RGIGFITFSSADSVEDL 148
Query: 137 ME 138
ME
Sbjct: 149 ME 150
Score = 32.3 bits (70), Expect = 0.47
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 54 SALGSPARSSPVSAGSEHGERFSR----KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPH 109
+ALG+P + GE +R K+FVG LP + D++ F RFG + +
Sbjct: 213 AALGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIP 272
Query: 110 KAESKSYFPPKGYAFLLFQDESSVA 134
K +S +G+ F+ F E+ VA
Sbjct: 273 KDPKRS--GHRGFGFVTFA-ENGVA 294
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 34.7 bits (76), Expect = 0.088
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 57 GSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSY 116
G PAR +PV+ + + +++G +P E EI + F +FG V A +K
Sbjct: 42 GGPARKAPVTTPPLQNK--ATVLYIGRIPHGFYETEIEAFFSQFG--TVKRVRVARNKKT 97
Query: 117 FPPKGYAFLLFQDESSVAALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLD 176
K + F+ F+D VA + + D + + I + V+ WR +F
Sbjct: 98 GKSKHFGFIQFED-PEVAEIAAGAMNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPV 156
Query: 177 ASMPLDPRK 185
S+ ++ R+
Sbjct: 157 DSVQIERRQ 165
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 34.7 bits (76), Expect = 0.088
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 69 SEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV--VDWPHKAESKSYFPPKGYAFLL 126
S G+ KVFVGGL + DE+ F +FG ++ V K KS KGY F+
Sbjct: 9 SPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKS----KGYGFVT 64
Query: 127 FQDESS 132
F++ S
Sbjct: 65 FRESDS 70
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 34.7 bits (76), Expect = 0.088
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 69 SEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV--VDWPHKAESKSYFPPKGYAFLL 126
S G+ KVFVGGL + DE+ F +FG ++ V K KS KGY F+
Sbjct: 9 SPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKS----KGYGFVT 64
Query: 127 FQDESS 132
F++ S
Sbjct: 65 FRESDS 70
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 34.3 bits (75), Expect = 0.12
Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 8/204 (3%)
Query: 68 GSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYAFL- 125
G + + R VFVG LP + + I F +FG + V S KG L
Sbjct: 162 GFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLK 221
Query: 126 -LFQDESSVAALMEACITDEDKLYLCVSSPTIRDKPVQI-RPWRLADADFVLDASMPLDP 183
+ + SSV A + L + I V++ R D + DP
Sbjct: 222 QINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQKGHDDTHLYDP 281
Query: 184 RKTVFVGGVPRPLKAVELAMIM---DRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSY 240
++TVF+G +P +K E+ + L + + DP L KG V F +++
Sbjct: 282 KRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAA 341
Query: 241 IAAISARFVQLQHGDIDKRVEVKP 264
+ +++L+ ++ + VKP
Sbjct: 342 NLVLKKGYLKLREREL-RISRVKP 364
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 34.3 bits (75), Expect = 0.12
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAAL 136
R +FV GLP D+ EI + FR F + H S K +AF +F D S A+
Sbjct: 35 RTLFVAGLPEDVKPREIYNLFREFPG--YETSHLRSSDG---AKPFAFAVFSDLQSAVAV 89
Query: 137 MEA 139
M A
Sbjct: 90 MHA 92
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSV 133
++FVGGL P++ + ++ +F RFG ++D E + +G+ F+ F D ++
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGD-ILDCQIMLE-RDTGRSRGFGFITFADRRAM 61
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 33.9 bits (74), Expect = 0.15
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 64 PVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV---VDWPHKAESKSYF-PP 119
P+ A ++ R +R+V+VGGL P +E + + F + V P A Y
Sbjct: 226 PIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHE 285
Query: 120 KGYAFLLFQ--DESSVAALMEACITDEDKLYLCVSS---PTIRDK--PVQIRP-WRLADA 171
K +AF+ + +E+S A ++ I + + + S P++ P Q P LA
Sbjct: 286 KKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAV 345
Query: 172 DFVLDASMPLDPRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKG 228
AS L+ +FVGG+P ++ +++ +GG+ + D E KG
Sbjct: 346 GLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLES-FGGLKGFDLVKDRETGNSKG 401
Score = 33.1 bits (72), Expect = 0.27
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 65 VSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYA 123
++ G+ G ++FVGGLP E ++ FG L D E+ + KGYA
Sbjct: 347 LTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGN---SKGYA 403
Query: 124 FLLFQDES----SVAALMEACITDEDKLYLCVSSPTIRDKPVQ 162
F ++QD S + AAL + D+ + T+ KP Q
Sbjct: 404 FCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQ 446
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 33.9 bits (74), Expect = 0.15
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 64 PVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV---VDWPHKAESKSYF-PP 119
P+ A ++ R +R+V+VGGL P +E + + F + V P A Y
Sbjct: 226 PIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHE 285
Query: 120 KGYAFLLFQ--DESSVAALMEACITDEDKLYLCVSS---PTIRDK--PVQIRP-WRLADA 171
K +AF+ + +E+S A ++ I + + + S P++ P Q P LA
Sbjct: 286 KKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAV 345
Query: 172 DFVLDASMPLDPRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKG 228
AS L+ +FVGG+P ++ +++ +GG+ + D E KG
Sbjct: 346 GLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLES-FGGLKGFDLVKDRETGNSKG 401
Score = 33.1 bits (72), Expect = 0.27
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 65 VSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYA 123
++ G+ G ++FVGGLP E ++ FG L D E+ + KGYA
Sbjct: 347 LTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGN---SKGYA 403
Query: 124 FLLFQDES----SVAALMEACITDEDKLYLCVSSPTIRDKPVQ 162
F ++QD S + AAL + D+ + T+ KP Q
Sbjct: 404 FCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQ 446
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 33.9 bits (74), Expect = 0.15
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 64 PVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV---VDWPHKAESKSYF-PP 119
P+ A ++ R +R+V+VGGL P +E + + F + V P A Y
Sbjct: 226 PIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHE 285
Query: 120 KGYAFLLFQ--DESSVAALMEACITDEDKLYLCVSS---PTIRDK--PVQIRP-WRLADA 171
K +AF+ + +E+S A ++ I + + + S P++ P Q P LA
Sbjct: 286 KKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAV 345
Query: 172 DFVLDASMPLDPRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKG 228
AS L+ +FVGG+P ++ +++ +GG+ + D E KG
Sbjct: 346 GLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLES-FGGLKGFDLVKDRETGNSKG 401
Score = 33.1 bits (72), Expect = 0.27
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 65 VSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYA 123
++ G+ G ++FVGGLP E ++ FG L D E+ + KGYA
Sbjct: 347 LTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGN---SKGYA 403
Query: 124 FLLFQDES----SVAALMEACITDEDKLYLCVSSPTIRDKPVQ 162
F ++QD S + AAL + D+ + T+ KP Q
Sbjct: 404 FCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQ 446
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAA 135
S K+F+GG+ +DED + +F ++G VVD + +G+ F+ F + ++
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGE-VVD-TRVILDRETGRSRGFGFVTFTSSEAASS 96
Query: 136 LMEA 139
++A
Sbjct: 97 AIQA 100
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 70 EHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
E+ ++FVGGL D+ E ++ S+F R+G + + P+G+ F+ F D
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITE--CQIMVGRDTGRPRGFGFITFTD 62
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 70 EHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
E+ ++FVGGL D+ E ++ S+F R+G + + P+G+ F+ F D
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITE--CQIMVGRDTGRPRGFGFITFTD 62
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.5 bits (73), Expect = 0.20
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 65 VSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV--VDWPHKAESKSYFPPKGY 122
++ G G+ KVFVGGL + ++ + F +FG ++ V KA +S KGY
Sbjct: 1 MAGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRS----KGY 56
Query: 123 AFLLFQD-ESSVAALMEA 139
F+ F++ E++ +A ++A
Sbjct: 57 GFVTFREAEAARSACVDA 74
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.5 bits (73), Expect = 0.20
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 65 VSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV--VDWPHKAESKSYFPPKGY 122
++ G G+ KVFVGGL + ++ + F +FG ++ V KA +S KGY
Sbjct: 1 MAGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRS----KGY 56
Query: 123 AFLLFQD-ESSVAALMEA 139
F+ F++ E++ +A ++A
Sbjct: 57 GFVTFREAEAARSACVDA 74
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.5 bits (73), Expect = 0.20
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 65 VSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV--VDWPHKAESKSYFPPKGY 122
++ G G+ KVFVGGL + ++ + F +FG ++ V KA +S KGY
Sbjct: 1 MAGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRS----KGY 56
Query: 123 AFLLFQD-ESSVAALMEA 139
F+ F++ E++ +A ++A
Sbjct: 57 GFVTFREAEAARSACVDA 74
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 33.1 bits (72), Expect = 0.27
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 69 SEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQ 128
++ + F R +F+ LP D+ ++E+ F FG V+ K P+G AF+ F+
Sbjct: 553 TQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGE--VESLSLVLHKVTKRPEGTAFVKFK 610
Query: 129 D-ESSVAALMEA 139
++SVAA+ A
Sbjct: 611 TADASVAAISAA 622
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESS 132
R VFVG +P D E+++ GP+V + PKGY F ++DE +
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSF--RLVTDRETGKPKGYGFCEYKDEET 62
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 32.7 bits (71), Expect = 0.36
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 13/169 (7%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
K+FVG +P + E ++ + FR F +V+ + + K+ P+G FL ++
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFS--IVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI 70
Query: 138 EACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPRPLK 197
+ K SSP V+ L D VLD S +P +FVG +P+ +
Sbjct: 71 NS--FHNKKTLPGASSPL----QVKYADGELERLD-VLDCS--CNPEHKLFVGMLPKNVS 121
Query: 198 AVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISA 246
E+ + YG + I L+ KG + + +++ +AA+ A
Sbjct: 122 ETEVQSLFSE-YGTIKDLQI-LRGSLQTSKGCLFLKYESKEQAVAAMEA 168
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 32.3 bits (70), Expect = 0.47
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAA 135
S K+F+GGL +DE + +F FG V A K +G+ F+ F +E +
Sbjct: 40 SSKLFIGGLSWSVDEQSLKDAFSSFGE--VAEVRIAYDKGSGRSRGFGFVDFAEEGDALS 97
Query: 136 LMEA 139
+A
Sbjct: 98 AKDA 101
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 31.9 bits (69), Expect = 0.62
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 64 PVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYA 123
PVS+ S K+++GGL P DE + +F F V +K +GY
Sbjct: 18 PVSSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNG--VTEARVMTNKVTGRSRGYG 75
Query: 124 FLLFQDESSVAALMEA 139
F+ F E S + + A
Sbjct: 76 FVNFISEDSANSAISA 91
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 31.9 bits (69), Expect = 0.62
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 70 EHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV---VDWPHKAESKSYFPPKGY-AFL 125
+ G+ + ++V L +DE+ + +F RFGP+ + WP E K G+ AF+
Sbjct: 180 DDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFM 239
Query: 126 LFQDESSVAALMEACITDEDKL 147
D + M+ I E +L
Sbjct: 240 NRADGEAAKEKMQGIIVYEYEL 261
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
+VF+GGLP D+ E+++ G + + + KGYAF+ F+ + +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFE--VRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 138 EACITDEDK 146
E + E K
Sbjct: 175 EELHSKEFK 183
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 31.9 bits (69), Expect = 0.62
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 65 VSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSY-FPPKGYA 123
+S + H R + K+FVG L D++ F +FG VVD S++Y KGY
Sbjct: 1 MSQTNNHDTRVT-KIFVGNLTWRTTADDLRRYFEQFGQ-VVD--ANVVSETYPGRSKGYG 56
Query: 124 FLLFQD-ESSVAALMEA 139
F+ F+D S+V AL +
Sbjct: 57 FITFRDYVSTVRALQNS 73
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 31.9 bits (69), Expect = 0.62
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
K+FVGGL + D + F +FG +V K+ KGY F+ F++ A M
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVE--AVVITDKNTGRSKGYGFVTFKE---AEAAM 77
Query: 138 EAC 140
AC
Sbjct: 78 RAC 80
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 31.9 bits (69), Expect = 0.62
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 57 GSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSY 116
G P R + S + + +F+G L PD+DE + +F FG ++ P
Sbjct: 93 GKPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFG-VIASNPKIMRDPDT 150
Query: 117 FPPKGYAFLLFQD-ESSVAAL 136
+G+ F+ + E+S AA+
Sbjct: 151 GNSRGFGFISYDSFEASDAAI 171
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 31.9 bits (69), Expect = 0.62
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 72 GERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV 104
GE + +FVGGL D+ E+++ F FG +V
Sbjct: 322 GESNNSTIFVGGLDADVTEEDLMQPFSDFGEVV 354
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 69 SEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQ 128
SE+G S +FVG L PD+ + + +F P V +S + KGY F+ F
Sbjct: 207 SENGPDLS--IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNT-GRSKGYGFVRFG 263
Query: 129 DESSVAALM 137
DE+ + M
Sbjct: 264 DENERSRAM 272
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 31.5 bits (68), Expect = 0.82
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 58 SPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPL---VVDWPHKAESK 114
SP +PV + H +RF ++ F+ P + + TSS R++ PL VV+ K
Sbjct: 66 SPHTQNPVPDPNLH-QRFLQR-FLEPSPEEYVPE--TSSSRKYTPLEQQVVELKSKYPDV 121
Query: 115 SYFPPKGYAFLLFQDESSVAALMEACITDEDKLYLCVSSPTIR 157
GY + F +++ +AA + D ++ S PT R
Sbjct: 122 VLMVEVGYRYRFFGEDAEIAARVLGIYAHMDHNFMTASVPTFR 164
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 31.5 bits (68), Expect = 0.82
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 43 RLSAAGLS-MCVSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFG 101
RLS + L + P + V+ +GE SR +FV + ++++ E+T+ F ++G
Sbjct: 133 RLSLSSLGGNAIPQFNIPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELTALFEQYG 192
Query: 102 PL 103
+
Sbjct: 193 DI 194
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 31.5 bits (68), Expect = 0.82
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 43 RLSAAGLS-MCVSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFG 101
RLS + L + P + V+ +GE SR +FV + ++++ E+T+ F ++G
Sbjct: 133 RLSLSSLGGNAIPQFNIPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELTALFEQYG 192
Query: 102 PL 103
+
Sbjct: 193 DI 194
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLV 104
+FVGGL ++ +DE+ S F +FG L+
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELL 287
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLF--QDESSVA- 134
K+ V LP ED + F FG + K E+ KGYAF+ F QD++ +A
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMK--RSKGYAFIQFTSQDDAFLAI 98
Query: 135 ALMEACITDEDKLYLCVSSPTIRD 158
M+ + + +Y+ ++ P RD
Sbjct: 99 ETMDRRMYNGRMIYIDIAKPGKRD 122
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAA 135
S K+F+GGL D+ + +F FG VVD + +G+ F+ F DE + A
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGD-VVD-AKVIVDRETGRSRGFGFVNFNDEGAATA 91
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAA 135
S K+F+GGL D+ + +F FG VVD + +G+ F+ F DE + A
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGD-VVD-AKVIVDRETGRSRGFGFVNFNDEGAATA 91
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
KVFVGGL + + + + F +FG +V KS KGY F+ F D A
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVE--AVVITDKSSGRSKGYGFVTFCDPE---AAQ 62
Query: 138 EACI 141
+AC+
Sbjct: 63 KACV 66
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
KVFVGGL + + + + F +FG +V KS KGY F+ F D A
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVE--AVVITDKSSGRSKGYGFVTFCDPE---AAQ 62
Query: 138 EACI 141
+AC+
Sbjct: 63 KACV 66
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 69 SEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQ 128
S G+ KVFVGGL + + + F ++G ++ K+ KGY F+ F+
Sbjct: 16 SPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILE--AVVIADKNTGRSKGYGFVTFR 73
Query: 129 D 129
D
Sbjct: 74 D 74
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALME 138
+FV LP + ++ F+ FGP+ + S+ P + F+ F+ +SV ++++
Sbjct: 282 IFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFETVASVQSVLQ 341
Query: 139 A 139
A
Sbjct: 342 A 342
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 179 MPLDPRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQ 238
M +D +V+VGG+P + + + +YG V I D ++ K G V FSN++
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFS-IYGSVLTVKIVNDRSVR-GKCYGFVTFSNRR 58
Query: 239 SYIAAI 244
S AI
Sbjct: 59 SADDAI 64
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 275 CAGARCGSKFAPFFCANVTCLQYYCEHCWAT 305
CA ++C S+ P F A C C +CW +
Sbjct: 649 CAKSQCRSRQCPCFAAGRECDPDVCRNCWVS 679
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAA 135
S ++VG L P+ E ++T F R+G + + + + +G+AF+ ++ A
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDI--------DRITVYSSRGFAFIYYRHVEEAVA 68
Query: 136 LMEA 139
EA
Sbjct: 69 AKEA 72
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYF 117
+ ++VGG+ P++ +D++ F +FG + D+ E K+ F
Sbjct: 250 KSLWVGGIGPNVSKDDLEEEFSKFGK-IEDFRFLRERKTAF 289
>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
polycomb-group protein identical to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 902
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 275 CAGARCGSKFAPFFCANVTCLQYYCEHCW 303
CA ++C S+ P F A+ C C +CW
Sbjct: 693 CAKSQCRSRQCPCFAADRECDPDVCRNCW 721
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 69 SEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQ 128
S G+ KVFVGGL + + + F ++G ++ K+ KGY F+ F+
Sbjct: 16 SPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILE--AVVITDKNTGRSKGYGFVTFR 73
Query: 129 DESSVAALMEACI 141
D A AC+
Sbjct: 74 DPE---AARRACV 83
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALME 138
+++G LPP +++D + + F FG +V+ K KGY F+ + D ++
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGL--SKGYGFVKYADVQMANTAVQ 539
Query: 139 A 139
A
Sbjct: 540 A 540
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALME 138
+++G LPP +++D + + F FG +V+ K KGY F+ + D ++
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGL--SKGYGFVKYADVQMANTAVQ 539
Query: 139 A 139
A
Sbjct: 540 A 540
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 72 GERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQD 129
G+ KVFVGGL D ++ + F ++G ++ V K +S KGY F+ F+D
Sbjct: 12 GDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRS----KGYGFVTFKD 67
Query: 130 ESSVAALME 138
+ E
Sbjct: 68 AKAATRACE 76
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 80 FVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVA-ALME 138
FV GL D DE ++T F +FG V+D + + + F+ F++E S+ A+M
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGN-VID-SKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMI 67
Query: 139 ACITDEDKLYLCVSSPTI 156
+ + + V S T+
Sbjct: 68 MDVEESRSKCVNVGSITV 85
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
+ FVGGL DE I F FG V D + ++ KG+ F+ F+DE S+ +
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGE-VFDSKIIIDRET-GRSKGFRFVTFKDEDSMRTAI 102
Query: 138 E 138
+
Sbjct: 103 D 103
>At2g16090.1 68415.m01845 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 593
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 20/73 (27%)
Query: 266 VLDDQMCD-ECAGARCGSKFAPFFCAN-----VTCLQY--YCEHC--------WATIHSR 309
V DD++C+ EC+ CG +F F C++ +C+ + + + C W T+H++
Sbjct: 227 VEDDELCEVECS---CGLQFC-FSCSSQAHSPCSCVMWELWRKKCFDESETVNWITVHTK 282
Query: 310 PGREFHKPLVKEG 322
P + HKP+ K G
Sbjct: 283 PCPKCHKPVEKNG 295
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLV 104
K+FVGGL P D + + +F FG +V
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIV 63
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 68 GSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPL-VVDWPHKAESKSYFPPKGYAFLL 126
GS HG + V +P D +E+ F RFGP+ V P S P+G+AF+
Sbjct: 43 GSSHGS-----LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQ---PRGFAFVE 94
Query: 127 FQD 129
F D
Sbjct: 95 FVD 97
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 185 KTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAI 244
+ + V V K ++M G V + TDP ++PKG V F+ ++S A+
Sbjct: 444 RVIHVTNVYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAV 503
Query: 245 SARFVQLQHGDIDKRVEV 262
+ I R+ V
Sbjct: 504 ALSGTMFYSRPIKVRMHV 521
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 72 GERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV 104
G+ + +FVGGL + ++++ F FG +V
Sbjct: 301 GDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIV 333
>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
similar to RNA-directed RNA polymerase GB:CAA09697
GI:4138282 [Nicotiana tabacum]
Length = 1107
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 185 KTVFVGGVPRPLKAVELAMIMDRLYG-GVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAA 243
KT+ V G P + A E+ ++RL G G YA P+ P+ V F++++
Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTRLI 62
Query: 244 ISARFVQLQHG 254
I+A +L +G
Sbjct: 63 ITAAAERLYYG 73
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPL-VVDWPHKAESKSYFPPKGYAFLLF-QDESSVA 134
RK++VG L ++ E ++ F FGP+ +V P E+ KG+ F+ F Q E S A
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQC---KGFGFIQFVQLEHSKA 321
Query: 135 A 135
A
Sbjct: 322 A 322
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 61 RSSPVSAGSEH--GERFSRKVFVGGLPPDIDEDEITSSFRRFG 101
R S VS +EH GE SR +FV + I++ E+ F++FG
Sbjct: 193 RGSNVSTVAEHPQGEILSRILFVRNVDSSIEDCELGVLFKQFG 235
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
+ FVGGL +++++ +F +FG V+D + +G+ F+ F+DE ++ +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGD-VID-SKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 138 E 138
E
Sbjct: 65 E 65
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
+ FVGGL +++++ +F +FG V+D + +G+ F+ F+DE ++ +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGD-VID-SKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 138 E 138
E
Sbjct: 65 E 65
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
+ FVGGL +++++ +F +FG V+D + +G+ F+ F+DE ++ +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGD-VID-SKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 138 E 138
E
Sbjct: 65 E 65
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
+ FVGGL +++++ +F +FG V+D + +G+ F+ F+DE ++ +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGD-VID-SKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 138 E 138
E
Sbjct: 65 E 65
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPL 103
V V LPP++ D + ++F++FGP+
Sbjct: 1198 VHVKNLPPNVTTDWVENAFKQFGPI 1222
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 59 PARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPL 103
P + VS +GE SR +FV + +++ E+++ F FG +
Sbjct: 167 PNTAGRVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEI 211
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 59 PARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPL 103
P + VS +GE SR +FV + +++ E+++ F FG +
Sbjct: 180 PNTAGRVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEI 224
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAA 135
S K+FVGG+ DE + +F ++G VVD + ++ +G+AF+ F +
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGE-VVDAKIIVDRET-GRSRGFAFVTFTSTEEASN 90
Query: 136 LME 138
M+
Sbjct: 91 AMQ 93
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 72 GERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV 104
G+ + +FVGGL + ++++ F FG +V
Sbjct: 299 GDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIV 331
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 65 VSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAF 124
+S+G + + +FVG L D+ + + +FR P V + KGY F
Sbjct: 143 LSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYP-SVKGAKVVIDRVTGRTKGYGF 201
Query: 125 LLFQDES-SVAALME 138
+ F DES + A+ E
Sbjct: 202 VRFSDESEQIRAMTE 216
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 65 VSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAF 124
+S+G + + +FVG L D+ + + +FR P V + KGY F
Sbjct: 143 LSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYP-SVKGAKVVIDRVTGRTKGYGF 201
Query: 125 LLFQDES-SVAALME 138
+ F DES + A+ E
Sbjct: 202 VRFSDESEQIRAMTE 216
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 74 RFSRKVFVGGLPPDIDEDEITSSFRRFG 101
RF+ V+V LP +I EDE+ +F +FG
Sbjct: 227 RFTN-VYVKNLPKEIGEDELRKTFGKFG 253
>At3g19720.2 68416.m02498 dynamin family protein identical to cDNA
dynamin-like protein (ARC5) GI: 30349145; contains Pfam
profile PF00350: Dynamin family
Length = 741
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 189 VGGVPRPLKAVELAMIMD-RLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISAR 247
VGG + + + L M D + +C+ G D DP + PK ++ Q+YI A + R
Sbjct: 76 VGGGTKTRRPITLHMKYDPQCQFPLCHLGSDDDPSVSLPKSLSQI-----QAYIEAENMR 130
Query: 248 FVQ 250
Q
Sbjct: 131 LEQ 133
>At3g19720.1 68416.m02497 dynamin family protein identical to cDNA
dynamin-like protein (ARC5) GI: 30349145; contains Pfam
profile PF00350: Dynamin family
Length = 777
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 189 VGGVPRPLKAVELAMIMD-RLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISAR 247
VGG + + + L M D + +C+ G D DP + PK ++ Q+YI A + R
Sbjct: 76 VGGGTKTRRPITLHMKYDPQCQFPLCHLGSDDDPSVSLPKSLSQI-----QAYIEAENMR 130
Query: 248 FVQ 250
Q
Sbjct: 131 LEQ 133
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALME 138
VFV LP + + F++FG +V K + +GY F+ F+ E + A ++
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIV---SCKVATLEDGKSRGYGFVQFEQEDAAHAAIQ 170
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPL---VVDWPHKAESKSYFPPKGYAFLLFQDESSVAA 135
V+V LP +I +DE+ +F ++G + VV S+S+ G+ + + ++VA
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSF----GFVNFVSPEAAAVAV 282
Query: 136 -LMEACITDEDKLYL 149
M ED LY+
Sbjct: 283 EKMNGISLGEDVLYV 297
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.138 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,857,404
Number of Sequences: 28952
Number of extensions: 336923
Number of successful extensions: 916
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 175
length of query: 334
length of database: 12,070,560
effective HSP length: 81
effective length of query: 253
effective length of database: 9,725,448
effective search space: 2460538344
effective search space used: 2460538344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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