GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001827-TA|BGIBMGA001827-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (334 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   4.1  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   7.2  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   7.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   7.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   7.2  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   9.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 273 DECAGARCGSKFAPFFCANVTCLQYYCEHCWATIHSRPG 311
           D C    C +K+    C  +   +  C++C    +S  G
Sbjct: 772 DSCTVCTCDAKYLEIKCKRIYNEKQCCKNCARVDYSMNG 810


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 281 GSKFAPFFCANVTCLQ-YYCEHCWATIHSRPG 311
           G+  +P    + TC   Y CEH W  I +  G
Sbjct: 359 GNLISPSINDDGTCGNGYVCEHRWRQIFNMVG 390


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 281 GSKFAPFFCANVTCLQ-YYCEHCWATIHSRPG 311
           G+  +P    + TC   Y CEH W  I +  G
Sbjct: 360 GNLISPSINDDGTCGNGYVCEHRWRQIFNMVG 391


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 154 PTIRDKPVQIRPWRLADADFVLDASM 179
           P  +D  V +  +  ++ADFV+D  M
Sbjct: 620 PCPKDGHVILETFHFSEADFVMDVVM 645


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 154 PTIRDKPVQIRPWRLADADFVLDASM 179
           P  +D  V +  +  ++ADFV+D  M
Sbjct: 620 PCPKDGHVILETFHFSEADFVMDVVM 645


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 254 GDIDKRVEVKPYVLDDQMCDECAGARCG 281
           GDID + E    ++D    ++  GA CG
Sbjct: 162 GDIDFQPEALHLLVDYMKKNKTLGAACG 189


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 254 GDIDKRVEVKPYVLDDQMCDECAGARCG 281
           GDID + E    ++D    ++  GA CG
Sbjct: 476 GDIDFQPEALHLLVDYMKKNKTLGAACG 503


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 254 GDIDKRVEVKPYVLDDQMCDECAGARCG 281
           GDID + E    ++D    ++  GA CG
Sbjct: 709 GDIDFQPEALHLLVDYMKKNKTLGAACG 736


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 254 GDIDKRVEVKPYVLDDQMCDECAGARCG 281
           GDID + E    ++D    ++  GA CG
Sbjct: 709 GDIDFQPEALHLLVDYMKKNKTLGAACG 736


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,782
Number of Sequences: 317
Number of extensions: 3152
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 334
length of database: 114,650
effective HSP length: 57
effective length of query: 277
effective length of database: 96,581
effective search space: 26752937
effective search space used: 26752937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)