Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001827-TA|BGIBMGA001827-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 43 7e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 42 9e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 36 0.006
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 35 0.019
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 34 0.033
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.043
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.075
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 32 0.100
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.100
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 32 0.13
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 31 0.17
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.17
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 30 0.40
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 30 0.53
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 29 0.70
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 29 0.93
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.93
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 29 1.2
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 1.6
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 1.6
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 2.1
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 28 2.1
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 2.8
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 27 2.8
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c... 27 3.7
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 6.5
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 26 6.5
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 8.7
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 8.7
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 8.7
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 26 8.7
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 42.7 bits (96), Expect = 7e-05
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
K+FVGG+P D E+E + F +FG V+D + K P+G+ F+ +++ES+V A M
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFG-RVLDATLMMD-KDTGRPRGFGFVTYENESAVEATM 305
Score = 29.9 bits (64), Expect = 0.53
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
K+F+GGL + +D + F +FG V+D +S + +G+ FL F++ V +M
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGE-VLDCTVMRDSTT-GRSRGFGFLTFKNPKCVNEVM 221
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 42.3 bits (95), Expect = 9e-05
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 26/202 (12%)
Query: 55 ALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESK 114
A G R +S SE+ +FVG L P+++E ++ S F + +
Sbjct: 170 ASGGGLREKSISKASEYS------IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQ 223
Query: 115 SYFPPKGYAFLLFQDES---SVAALMEACITDEDKLYLCVSSPTIRD---KPVQIRPWRL 168
+ +GY F+ F DE+ S A M+ I + + + +++P + PV + P +
Sbjct: 224 TNV-SRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSM 282
Query: 169 ADADFVLDASMPL-----DPRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPEL 223
F A+ P+ TVFVGG+ + + EL + +G + Y I
Sbjct: 283 PPVGF-YSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQN-FGEIVYVKIPPG--- 337
Query: 224 KYPKGAGRVAFSNQQSYIAAIS 245
KG G V F N+QS AI+
Sbjct: 338 ---KGCGFVQFVNRQSAEIAIN 356
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 36.3 bits (80), Expect = 0.006
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 53 VSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFG-PLVVDWPHKA 111
+ L P S+ S +++G L D++ED+I F FG P+ ++
Sbjct: 7 IERLNEQELDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDK 66
Query: 112 ESKSYFPPKGYAFLLFQDESSVAALME 138
E+ KG+AFL ++D+ S ++
Sbjct: 67 ETGK---SKGFAFLKYEDQRSTVLAVD 90
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.7 bits (76), Expect = 0.019
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 41 VNRLSAAGLSMCVS-ALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRR 99
+ RL+ G + V S + SS + A + G R VF+G LP I EDEI
Sbjct: 171 LKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGA--CRNVFLGNLPNGITEDEIREDLEP 228
Query: 100 FGPL 103
FGP+
Sbjct: 229 FGPI 232
Score = 33.1 bits (72), Expect = 0.057
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAAL 136
+ V+VG LPP+ DEI S R GP+ ES P K AF+ F D S A
Sbjct: 115 KTVYVGNLPPNTPIDEILSCVRT-GPI--------ESAWILPEKNCAFISFLDPSHATAF 165
Query: 137 ME 138
+
Sbjct: 166 FQ 167
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 33.9 bits (74), Expect = 0.033
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 53 VSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAE 112
V G P R + S +FVG L P +DE + +F G L V P A
Sbjct: 75 VKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQL-VKAPQVAR 133
Query: 113 SKSYFPPKGYAFLLFQDESSVAALMEA 139
++ KGY F+ + + A +EA
Sbjct: 134 DEN-GRSKGYGFVSYDSFETADAAIEA 159
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 33.5 bits (73), Expect = 0.043
Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 6/161 (3%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALME 138
VFVG L ++D+ + F +G +V KGY ++ F+ + A +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIV--GARVIMDGQSGRSKGYGYVDFETPEAAKAAVA 322
Query: 139 ACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPRPLKA 198
A T E + V+ +P +P+ A D +P TVFVG +
Sbjct: 323 ANGTKEIDGRM-VNLDLSNPRPANPQPYAQQRAGNFGDQLS--EPSDTVFVGNLSFNATE 379
Query: 199 VELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQS 239
+L+ G + + TDP+ KG G V FS+ S
Sbjct: 380 DDLSTAFGGC-GDIQSIRLPTDPQSGRLKGFGYVTFSDIDS 419
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 32.7 bits (71), Expect = 0.075
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAA 135
V+VG +P ++ E+++ F++ GP V + + +S PKGY F + D ++ A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGP-VKSFQLVIDPES-GQPKGYGFCEYHDPATAAS 61
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 32.3 bits (70), Expect = 0.100
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKG-----YAFLLFQDESSV 133
V V G PP++ +++ + F RFG ++ + A S + P KG + L + + SS
Sbjct: 172 VIVFGFPPELT-NQVIAEFSRFGTIISENSLTASSAGFTPSKGPISGNWLQLTYAEPSSA 230
Query: 134 --AALMEACITDEDKLYLCVSSP 154
A L + ++ + C+ SP
Sbjct: 231 AKAVLSNGMLINDSFMVGCIYSP 253
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 32.3 bits (70), Expect = 0.100
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD-ESSVA 134
++++F+ L ED++ S F FG L + H K PKG+A++ F D + +V
Sbjct: 322 TKRLFLRNLTYSCAEDDLKSLFGPFGQL--EQVHMPIDKKTNNPKGFAYIDFHDADDAVR 379
Query: 135 ALME 138
A +E
Sbjct: 380 AYLE 383
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVA 134
VFVG +P D+ E ++T F + GP V + + ++ KGY F F D + A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGP-VKTFKLVLDPET-GSGKGYGFCEFFDSETTA 62
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 31.5 bits (68), Expect = 0.17
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 54 SALGSPARSSPVSAGSEHGER-----FSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWP 108
SA G P+ S + SE+ E ++ V++ GLP D+ DEI F++ G + +
Sbjct: 82 SAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNID 141
Query: 109 HKAESKSYF-----PPKGYAFLLFQDESSVAALMEACITDEDKLY 148
+ + PKG A ++F SV L E D + Y
Sbjct: 142 NGTPRIKIYRTEDGTPKGDALIVFFRSESV-ELAEQLFDDTEFRY 185
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 31.5 bits (68), Expect = 0.17
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPL 103
SR VF+G LP E EI +F +FG +
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.40
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAA 135
+R V++ GLPP+ ++ + RFG V KGY F F++E S
Sbjct: 295 TRNVYIRGLPPNTSDENLLLYTNRFGK--VSSSKAIIDMETNLCKGYGFACFEEEKSALI 352
Query: 136 LMEA 139
+ A
Sbjct: 353 CISA 356
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.9 bits (64), Expect = 0.53
Identities = 50/193 (25%), Positives = 76/193 (39%), Gaps = 26/193 (13%)
Query: 68 GSEHGERFSR----KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYA 123
G +H SR +FVG L P ++ ++ +FR P + + K Y
Sbjct: 169 GIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRK-YG 227
Query: 124 FLLFQDESSVA-AL--MEACITDEDKLYLCVSSPTIR-----DKPVQIRPWRLADADFVL 175
F+ F E AL M+ + L + V+SP R D + I P ++
Sbjct: 228 FVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQ 287
Query: 176 DASMPLDP-RKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYP--KGAGRV 232
D +DP TVFVGG+ L +L VC+ +K P KG G V
Sbjct: 288 DL-CSMDPLNTTVFVGGLASNLSEKDLQ---------VCFQPFGRILNIKIPFGKGCGFV 337
Query: 233 AFSNQQSYIAAIS 245
+S + + AI+
Sbjct: 338 QYSEKSAAEKAIN 350
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.70
Identities = 13/59 (22%), Positives = 26/59 (44%)
Query: 45 SAAGLSMCVSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPL 103
+A+ V + + P + ++ E VFV +PP+ + + S+ FGP+
Sbjct: 283 TASTTGQTVKGVNADQTQQPTAPYTQSNELLETSVFVKNIPPETSDVSLKSAMSIFGPV 341
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 29.1 bits (62), Expect = 0.93
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFG 101
++++VGGL I+ ++ S F RFG
Sbjct: 5 KRIYVGGLSSSIESSDLESRFSRFG 29
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.1 bits (62), Expect = 0.93
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 81 VGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
V L D E+E+ FRRFG + + A+ K KG+AF+ + D
Sbjct: 206 VTNLSDDTREEELRDLFRRFGG--IQRVYLAKDKETGRAKGFAFVSYYD 252
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 61 RSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPP 119
+ P SA E E +FV G+ + EDE+ F +FG + V + +K+
Sbjct: 86 KKEPQSA-PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKA---S 141
Query: 120 KGYAFLLFQD-ESSVAAL 136
+G+ FL F E + +A+
Sbjct: 142 RGFGFLSFSTVEEATSAI 159
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 1.6
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGP-------LVVDWPHKAESKSYFPPKG---YAFL 125
S ++VG + + ++EI F ++G L+ + K ++K + PPK Y F+
Sbjct: 16 SSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFV 75
Query: 126 LFQDESSVAALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADF 173
F + S+ E + D + L TI+ + V P +L D F
Sbjct: 76 KFVNAESI----EEVLKDAKGMTLGQRKLTIKARVV--NPAKLTDKKF 117
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 75 FSRKVFVGGLPPDIDEDEITSSFRRFG 101
+SR +F+GG+ + E + S F RFG
Sbjct: 404 YSRTLFLGGITRSVREPVLRSMFERFG 430
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 70 EHGERFSRKV--FVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLF 127
+ G+ RKV FVG LP D + + F+R G V K+ KGYAF+ F
Sbjct: 83 QKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQ--VPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD-ESSVAAL- 136
VF+ L P ID + +F FG ++ K KGY F+ F ES+ AA+
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKIL---SCKVAVDELGNAKGYGFVHFDSVESANAAIE 226
Query: 137 -MEACITDEDKLYL 149
+ + ++ K+Y+
Sbjct: 227 HVNGMLLNDKKVYV 240
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.5 bits (58), Expect = 2.8
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 35 DQTQDVVNRLSAAGLSMCVSALGSPARSSPVSAGSEHGERFSRK--VFVGGLPPDIDEDE 92
D +D N L S + LG A + SE+ +K ++VG LP E +
Sbjct: 63 DDEEDSPNAL--VNTSRQIMDLGEDAEKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQ 120
Query: 93 ITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQ--DESSVAA 135
+ F +FGP++ + ++ K YAF+ F+ D ++V A
Sbjct: 121 MRMYFSQFGPVL--RLRMSRNRKTGSSKHYAFIEFESLDVANVVA 163
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 204 IMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQS-YIAAISARFVQLQHGDIDKRVE 261
+ ++L GG+C I E+ K +V F N+++ Y+ ++ + GDI VE
Sbjct: 73 LKEKLAGGLCLEDIQNIDEVSLNKLIEKVGFHNRKTIYLKQMARILSEKFQGDIPDTVE 131
>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 186
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/67 (22%), Positives = 33/67 (49%)
Query: 203 MIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEV 262
+++ YG ID +L V +S + ++IA+ + + + H DIDK+ +
Sbjct: 99 LLLSSTYGSSAKRPIDIIHQLHSSMENKNVRYSMKCNWIASPNDEYTWVFHFDIDKKGII 158
Query: 263 KPYVLDD 269
+++D+
Sbjct: 159 YRHIIDN 165
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 61 RSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV 104
+S P+ +H R V V LP DI E+E+ F+ G ++
Sbjct: 577 KSKPIE---QHRNREELTVLVTNLPSDISENELKIFFKDCGNII 617
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 227 KGAGRV-----AFSNQQSYIA-AISARFVQLQHGDIDKRVEV 262
K GRV +FS + Y A RFVQ G+I KR EV
Sbjct: 191 KSVGRVTKLGRSFSRARDYDAMGADTRFVQCPQGEIQKRKEV 232
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 8.7
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 37 TQDVVNRLSAAGLSMCVSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDI 88
+ D ++ A G++ SA SP+ SSP SA S ++ RK LPP +
Sbjct: 43 SHDFESKEDAEGMNKDESA-PSPSTSSPSSASSRSQSKYVRK---EALPPQL 90
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPL 103
VFV L + E E+ + FR+FGPL
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPL 303
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLV 104
K+++ LP ++ ED++ + FG L+
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLL 337
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 8.7
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 72 GERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFL-LFQDE 130
G RF + G + ++ + RR G LV + PH + P YAF + DE
Sbjct: 144 GVRFPGLIHPGIIGTAPSKEILAEWNRREGALVAENPHSTHVMAQLPNASYAFAGILADE 203
Query: 131 SSVAAL 136
A +
Sbjct: 204 KLSATV 209
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.138 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,473,364
Number of Sequences: 5004
Number of extensions: 60268
Number of successful extensions: 170
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 46
length of query: 334
length of database: 2,362,478
effective HSP length: 73
effective length of query: 261
effective length of database: 1,997,186
effective search space: 521265546
effective search space used: 521265546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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