GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001827-TA|BGIBMGA001827-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (334 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    24   6.9  
DQ974171-1|ABJ52811.1|  403|Anopheles gambiae serpin 14 protein.       23   9.1  

>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 23.8 bits (49), Expect = 6.9
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 127 FQDESSVAALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLD 176
           FQ E   A + + C      LY C SS + R   V+    RL D   VL+
Sbjct: 227 FQGEQLKARIKKVCTGYHVSLYPCPSSGSERTDMVKGVCTRLEDLRMVLN 276


>DQ974171-1|ABJ52811.1|  403|Anopheles gambiae serpin 14 protein.
          Length = 403

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 184 RKTVFVGGVPRPLKAVELA 202
           R T+F+G VP+ L+ ++L+
Sbjct: 168 RDTLFLGDVPKQLQMIQLS 186


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 343,105
Number of Sequences: 2123
Number of extensions: 14161
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 2
length of query: 334
length of database: 516,269
effective HSP length: 64
effective length of query: 270
effective length of database: 380,397
effective search space: 102707190
effective search space used: 102707190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)