Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001827-TA|BGIBMGA001827-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(334 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19154-1|CAA79552.1| 372|Caenorhabditis elegans Hypothetical pr... 276 2e-74
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 221 4e-58
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 136 3e-32
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 136 3e-32
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 136 3e-32
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 132 3e-31
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 123 2e-28
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 51 1e-06
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 51 1e-06
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 37 0.023
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 37 0.023
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 37 0.023
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 37 0.023
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 35 0.071
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 35 0.093
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 35 0.093
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 35 0.093
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 34 0.12
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 34 0.12
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 34 0.12
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 34 0.12
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 34 0.12
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 33 0.28
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 33 0.28
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 33 0.28
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 33 0.28
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 33 0.28
Z68879-10|CAA93082.2| 473|Caenorhabditis elegans Hypothetical p... 32 0.50
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 32 0.50
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 32 0.50
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 32 0.66
AF016441-6|AAX55687.1| 440|Caenorhabditis elegans Paps (adenosi... 32 0.66
AF016441-5|AAX55688.1| 408|Caenorhabditis elegans Paps (adenosi... 32 0.66
AF016441-4|AAX55686.1| 425|Caenorhabditis elegans Paps (adenosi... 32 0.66
Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 31 0.87
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 31 1.1
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 31 1.1
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 31 1.1
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 31 1.5
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 31 1.5
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 30 2.0
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 30 2.0
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 30 2.0
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 30 2.0
AF016448-14|AAB65960.2| 304|Caenorhabditis elegans Hypothetical... 30 2.0
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 30 2.0
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 30 2.7
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 30 2.7
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 30 2.7
U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical pr... 29 3.5
U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms prot... 29 3.5
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 29 3.5
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 29 3.5
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 3.5
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 29 3.5
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 29 3.5
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 29 3.5
AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. 29 3.5
Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical pr... 28 8.1
U97406-2|AAC24293.2| 253|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL031627-10|CAA20949.1| 301|Caenorhabditis elegans Hypothetical... 28 8.1
>Z19154-1|CAA79552.1| 372|Caenorhabditis elegans Hypothetical
protein C40H1.1 protein.
Length = 372
Score = 276 bits (676), Expect = 2e-74
Identities = 129/265 (48%), Positives = 174/265 (65%), Gaps = 17/265 (6%)
Query: 75 FSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWP----HKAESKSYFPPKG--------Y 122
+SRKVF+GGLP D+ E+++ ++F FG +++DWP H AE KG Y
Sbjct: 56 YSRKVFIGGLPIDVSEEQVWATFGAFGKVLIDWPRRPEHNAERAEQELKKGSGSRAVTGY 115
Query: 123 AFLLFQDESSVAALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLD 182
FL+F E SV L+ AC EDK YL +SSPT+ DK VQ+RPWRL+D D+ + + +D
Sbjct: 116 VFLVFTHERSVQELVNACEFYEDKYYLQLSSPTMTDKAVQVRPWRLSDIDYFCNDNSSVD 175
Query: 183 PRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIA 242
R+TVF+GGVPRP +A +LA ++ YG V Y GID DPELKYPKGA RV FS Q+++
Sbjct: 176 HRRTVFIGGVPRPTRAQDLARCLEGHYGKVSYVGIDIDPELKYPKGAARVTFSTSQAFVR 235
Query: 243 AISARFVQLQHGDIDKRVEVKPYVLDDQMCDECAGARCGSKFAPFFCANVTCLQYYCEHC 302
AIS RFVQ+ H + +KRVE+KPYV+++Q CDEC G C +AP+FC + +CLQYYCE C
Sbjct: 236 AISGRFVQVNHAENNKRVEIKPYVMEEQYCDECEGRLCKHNYAPYFCGHASCLQYYCEGC 295
Query: 303 WATIH-----SRPGREFHKPLVKEG 322
W +H + H P+V+ G
Sbjct: 296 WDRMHIGKNEDNKLEDQHYPMVRTG 320
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 221 bits (541), Expect = 4e-58
Identities = 100/200 (50%), Positives = 138/200 (69%), Gaps = 2/200 (1%)
Query: 121 GYAFLLFQDESSVAALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMP 180
GY FLLF+ E SV L+ C +E+ L++ + S T + VQIRPW LADA+F++D ++P
Sbjct: 223 GYVFLLFEKERSVRDLVLDCFEEEEGLFITLESSTDSIR-VQIRPWLLADAEFLMDFNVP 281
Query: 181 LDPRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSY 240
++ + F+GGVPRPLKAVELA ++ YG V GID D + KYP+G+GRVAFS+ +Y
Sbjct: 282 INTKLVAFIGGVPRPLKAVELAHFFEQTYGHVVCVGIDIDNKFKYPRGSGRVAFSDYDAY 341
Query: 241 IAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECAGARCGSKFAPFFCANVTCLQYYCE 300
+ AI+ R++ L H DI KRVE+KPY +Q C+EC+G R + AP+FC ++ C QYYCE
Sbjct: 342 VQAITDRYIVLDHEDIHKRVEIKPYFFHNQSCEECSG-RYHRQHAPYFCPSLECFQYYCE 400
Query: 301 HCWATIHSRPGREFHKPLVK 320
CW +HS P R H P+VK
Sbjct: 401 PCWHKMHSHPSRFHHMPVVK 420
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 73 ERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHK-AESKSYFPP 119
E +SRKVFVGGLP + E +I + F R+G L VDWP K E KS P
Sbjct: 84 EVYSRKVFVGGLPSCVKESDILNFFSRYGRLQVDWPSKHYECKSDSDP 131
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 136 bits (328), Expect = 3e-32
Identities = 80/219 (36%), Positives = 120/219 (54%), Gaps = 13/219 (5%)
Query: 69 SEHGERF-SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSY-----FPPKGY 122
+E+ +R S KVFVGG+ ++ I F +FG + VDWP K + S Y
Sbjct: 196 NENNQRVVSNKVFVGGISHMMNRKIINKFFGQFGTVFVDWPVKQKPNSRGKSIAIGSYSY 255
Query: 123 AFLLFQDESSVAALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMP-- 180
FL++ DE SV LM AC + + VS P RD +QIRPW + + ++L+ +
Sbjct: 256 LFLVYSDEQSVIKLMSACHRNSQNDFF-VSVPGFRDM-IQIRPWFIYNGFYILEKARHNR 313
Query: 181 -LDPRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQS 239
+D +TVF+GG+PR + A E+A + +G V ID D + YPKGA RV F +
Sbjct: 314 IIDIHRTVFLGGLPRIVTAEEIAQMFSE-FGVVLLVTIDIDQDYGYPKGAARVTFERDSA 372
Query: 240 YIAAISARFVQLQHGDIDK-RVEVKPYVLDDQMCDECAG 277
+ A+ +F++ + D K +E+KPYV++D CDEC G
Sbjct: 373 FNRALEKKFLKFDNIDSSKTMIEIKPYVMEDVGCDECGG 411
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 288 FCANVTCLQYYCEHCWATIHSRPGREFHKPLVKEGADRPR 327
+C C QYYC C +HS P + P K RPR
Sbjct: 569 YCKEAPCRQYYCPSCSNKLHSGPNQHTLLPAGKP-ERRPR 607
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 136 bits (328), Expect = 3e-32
Identities = 80/219 (36%), Positives = 120/219 (54%), Gaps = 13/219 (5%)
Query: 69 SEHGERF-SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSY-----FPPKGY 122
+E+ +R S KVFVGG+ ++ I F +FG + VDWP K + S Y
Sbjct: 196 NENNQRVVSNKVFVGGISHMMNRKIINKFFGQFGTVFVDWPVKQKPNSRGKSIAIGSYSY 255
Query: 123 AFLLFQDESSVAALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMP-- 180
FL++ DE SV LM AC + + VS P RD +QIRPW + + ++L+ +
Sbjct: 256 LFLVYSDEQSVIKLMSACHRNSQNDFF-VSVPGFRDM-IQIRPWFIYNGFYILEKARHNR 313
Query: 181 -LDPRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQS 239
+D +TVF+GG+PR + A E+A + +G V ID D + YPKGA RV F +
Sbjct: 314 IIDIHRTVFLGGLPRIVTAEEIAQMFSE-FGVVLLVTIDIDQDYGYPKGAARVTFERDSA 372
Query: 240 YIAAISARFVQLQHGDIDK-RVEVKPYVLDDQMCDECAG 277
+ A+ +F++ + D K +E+KPYV++D CDEC G
Sbjct: 373 FNRALEKKFLKFDNIDSSKTMIEIKPYVMEDVGCDECGG 411
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 288 FCANVTCLQYYCEHCWATIHSRPGREFHKPLVKEGADRPR 327
+C C QYYC C +HS P + P K RPR
Sbjct: 569 YCKEAPCRQYYCPSCSNKLHSGPNQHTLLPAGKP-ERRPR 607
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 136 bits (328), Expect = 3e-32
Identities = 80/219 (36%), Positives = 120/219 (54%), Gaps = 13/219 (5%)
Query: 69 SEHGERF-SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSY-----FPPKGY 122
+E+ +R S KVFVGG+ ++ I F +FG + VDWP K + S Y
Sbjct: 196 NENNQRVVSNKVFVGGISHMMNRKIINKFFGQFGTVFVDWPVKQKPNSRGKSIAIGSYSY 255
Query: 123 AFLLFQDESSVAALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMP-- 180
FL++ DE SV LM AC + + VS P RD +QIRPW + + ++L+ +
Sbjct: 256 LFLVYSDEQSVIKLMSACHRNSQNDFF-VSVPGFRDM-IQIRPWFIYNGFYILEKARHNR 313
Query: 181 -LDPRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQS 239
+D +TVF+GG+PR + A E+A + +G V ID D + YPKGA RV F +
Sbjct: 314 IIDIHRTVFLGGLPRIVTAEEIAQMFSE-FGVVLLVTIDIDQDYGYPKGAARVTFERDSA 372
Query: 240 YIAAISARFVQLQHGDIDK-RVEVKPYVLDDQMCDECAG 277
+ A+ +F++ + D K +E+KPYV++D CDEC G
Sbjct: 373 FNRALEKKFLKFDNIDSSKTMIEIKPYVMEDVGCDECGG 411
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 288 FCANVTCLQYYCEHCWATIHSRPGREFHKPLVKEGADRPR 327
+C C QYYC C +HS P + P K RPR
Sbjct: 569 YCKEAPCRQYYCPSCSNKLHSGPNQHTLLPAGKP-ERRPR 607
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 132 bits (319), Expect = 3e-31
Identities = 93/281 (33%), Positives = 139/281 (49%), Gaps = 43/281 (15%)
Query: 75 FSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKA----ESKSYFPPK---------- 120
FSRK+FVGG+P DI E + SF FG V+WP + +S P
Sbjct: 293 FSRKIFVGGVPWDITEAALKDSFGEFGSCAVEWPGQEARYRSGQSNLAPSNGSLRAQTKY 352
Query: 121 ------GYAFLLFQDESSVAALMEAC---ITDEDKLYLCV-----SSPTIRD--KP--VQ 162
GY +++F+DE +VA+L+ C I + Y + S IR +P VQ
Sbjct: 353 TGQAATGYVYMIFEDERAVASLLHECSQEIGGAGEWYFKIRAQRSKSTEIRQVGQPQYVQ 412
Query: 163 IRPWRLADADFVLDASM---PLDPRKTVFVGGVPRPLKAVELAMIMDRLYGGVCYAGIDT 219
I PW +D+ F D ++ ++P++TVFVG + + A L IM+ +G V +DT
Sbjct: 413 IIPWVTSDSMFCEDDTLLETGIEPKRTVFVGALHGMMTAQVLHSIMEDCFGAVECVQLDT 472
Query: 220 DPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECAGAR 279
D + KYP G+GRV F +Y AI ++ + KRV++ P+ L+ C
Sbjct: 473 D-KFKYPIGSGRVTFREHGAYFKAIEMGYLHVYTSKFRKRVQIDPF-LESTCC-----MV 525
Query: 280 CGSKFAPFFCANVTCLQYYCEHCWATIHSR-PGREFHKPLV 319
C S+ A FC N C +YYC +CWA H + +E H P++
Sbjct: 526 CNSQSAHCFCRNKNCFKYYCHNCWALDHGKDDDQEVHIPVI 566
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 123 bits (297), Expect = 2e-28
Identities = 71/194 (36%), Positives = 105/194 (54%), Gaps = 12/194 (6%)
Query: 93 ITSSFRRFGPLVVDWPHKAESKSY-----FPPKGYAFLLFQDESSVAALMEACITDEDKL 147
I F +FG + VDWP K + S Y FL++ DE SV LM AC +
Sbjct: 7 INKFFGQFGTVFVDWPVKQKPNSRGKSIAIGSYSYLFLVYSDEQSVIKLMSACHRNSQND 66
Query: 148 YLCVSSPTIRDKPVQIRPWRLADADFVLDASMP---LDPRKTVFVGGVPRPLKAVELAMI 204
+ VS P RD +QIRPW + + ++L+ + +D +TVF+GG+PR + A E+A +
Sbjct: 67 FF-VSVPGFRDM-IQIRPWFIYNGFYILEKARHNRIIDIHRTVFLGGLPRIVTAEEIAQM 124
Query: 205 MDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDK-RVEVK 263
+G V ID D + YPKGA RV F ++ A+ +F++ + D K +E+K
Sbjct: 125 FSE-FGVVLLVTIDIDQDYGYPKGAARVTFERDSAFNRALEKKFLKFDNIDSSKTMIEIK 183
Query: 264 PYVLDDQMCDECAG 277
PYV++D CDEC G
Sbjct: 184 PYVMEDVGCDECGG 197
Score = 34.3 bits (75), Expect = 0.12
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAAL 136
R VF+GGLP + +EI F FG +++ + Y PKG A + F+ +S+
Sbjct: 105 RTVFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGY--PKGAARVTFERDSAFNRA 162
Query: 137 MEACITDEDKLYLCVSSPTIRDKPVQIRPWRLAD 170
+E D + SS T+ ++I+P+ + D
Sbjct: 163 LEKKFLKFDNI---DSSKTM----IEIKPYVMED 189
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 288 FCANVTCLQYYCEHCWATIHSRPGREFHKPLVKEGADRPR 327
+C C QYYC C +HS P + P K RPR
Sbjct: 355 YCKEAPCRQYYCPSCSNKLHSGPNQHTLLPAGKP-ERRPR 393
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 74 RFSRKVFVGGLPPDIDEDEITSSFRRFGPL-VVDWPHKAESKSYFPPKGYAFLLFQDESS 132
R ++KVFVGGLP D E ++ S F +FG + ++WP ++K+ + +AF++F++E S
Sbjct: 107 RENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKA---RRNFAFIVFEEEES 163
Score = 38.7 bits (86), Expect = 0.006
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAAL 136
+K+FVGG+ P+++ ++++S F ++G V ++ +G+AF+ F
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGE--VAQAQVKYDRTNGRSRGFAFVEF-------TT 79
Query: 137 MEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLD 182
E C KL L TI+ K V+++P + + V +P D
Sbjct: 80 GEGC-----KLALAAREQTIKGKSVEVKPAKSRENKKVFVGGLPSD 120
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 74 RFSRKVFVGGLPPDIDEDEITSSFRRFGPL-VVDWPHKAESKSYFPPKGYAFLLFQDESS 132
R ++KVFVGGLP D E ++ S F +FG + ++WP ++K+ + +AF++F++E S
Sbjct: 107 RENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKA---RRNFAFIVFEEEES 163
Score = 38.7 bits (86), Expect = 0.006
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAAL 136
+K+FVGG+ P+++ ++++S F ++G V ++ +G+AF+ F
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGE--VAQAQVKYDRTNGRSRGFAFVEF-------TT 79
Query: 137 MEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLD 182
E C KL L TI+ K V+++P + + V +P D
Sbjct: 80 GEGC-----KLALAAREQTIKGKSVEVKPAKSRENKKVFVGGLPSD 120
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 73 ERFSRKVFVGGLPPDIDEDEITSSFRRFG-PLVVDWPHKAESKSYFPPKGYAFLLFQD 129
+R R VFVG + D+ ED I S F + G L + H E+ PKGY F+ F D
Sbjct: 14 DRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGK---PKGYGFIEFPD 68
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 36.7 bits (81), Expect = 0.023
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 142 TDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPRPLKAVEL 201
+D+ L PT+ + P AD D ++ + R+TV+VG +P+ + E+
Sbjct: 124 SDDGSALLITVDPTLEQLGLPAYPPLPADTD----SAKVEEIRRTVYVGNLPKGVDGNEV 179
Query: 202 AMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAI 244
+ + +G V YA + + P+ P V FS Q S A+
Sbjct: 180 LELFNMYFGEVMYARMASGPD-ALPCAYAYVEFSQQASVCNAL 221
Score = 33.9 bits (74), Expect = 0.16
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 56 LGSPARSS-PVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRR-FGPLVVDWPHKAES 113
LG PA P S E R V+VG LP +D +E+ F FG ++ + A
Sbjct: 141 LGLPAYPPLPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVM--YARMASG 198
Query: 114 KSYFPPKGYAFLLFQDESSVAALME 138
P YA++ F ++SV ++
Sbjct: 199 PDAL-PCAYAYVEFSQQASVCNALQ 222
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 36.7 bits (81), Expect = 0.023
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 53 VSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAE 112
+ G P + + SA ++ + +FVG L P++DE + +F FG +++ P
Sbjct: 77 IKLYGKPIKVNKASAHEKNMD-VGANIFVGNLDPEVDEKLLYDTFSAFG-VILQVPKIMR 134
Query: 113 SKSYFPPKGYAFLLFQD-ESSVAAL 136
KG+AF+ F E+S AL
Sbjct: 135 DVDSGTSKGFAFINFASFEASDTAL 159
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 36.7 bits (81), Expect = 0.023
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 142 TDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVPRPLKAVEL 201
+D+ L PT+ + P AD D ++ + R+TV+VG +P+ + E+
Sbjct: 124 SDDGSALLITVDPTLEQLGLPAYPPLPADTD----SAKVEEIRRTVYVGNLPKGVDGNEV 179
Query: 202 AMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAI 244
+ + +G V YA + + P+ P V FS Q S A+
Sbjct: 180 LELFNMYFGEVMYARMASGPD-ALPCAYAYVEFSQQASVCNAL 221
Score = 33.9 bits (74), Expect = 0.16
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 56 LGSPARSS-PVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRR-FGPLVVDWPHKAES 113
LG PA P S E R V+VG LP +D +E+ F FG ++ + A
Sbjct: 141 LGLPAYPPLPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVM--YARMASG 198
Query: 114 KSYFPPKGYAFLLFQDESSVAALME 138
P YA++ F ++SV ++
Sbjct: 199 PDAL-PCAYAYVEFSQQASVCNALQ 222
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 36.7 bits (81), Expect = 0.023
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 53 VSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAE 112
+ G P + + SA ++ + +FVG L P++DE + +F FG +++ P
Sbjct: 87 IKLYGKPIKVNKASAHEKNMD-VGANIFVGNLDPEVDEKLLYDTFSAFG-VILQVPKIMR 144
Query: 113 SKSYFPPKGYAFLLFQD-ESSVAAL 136
KG+AF+ F E+S AL
Sbjct: 145 DVDSGTSKGFAFINFASFEASDTAL 169
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 35.1 bits (77), Expect = 0.071
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 35 DQTQDVVNRLSAAGLSMCVSALGSPARSSPVSAGSEHGER-FSRKVFVGGLPPDIDEDEI 93
++ +D+ + L G+ V +P SE + ++ V+V +P + ED++
Sbjct: 157 EKRKDLRHHLEKVGMDQAVVERLAPTVERGFQGTSEFDDDPYTTNVYVSNIPHSVTEDDL 216
Query: 94 TSSFRRFGPLV---VDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
+F FGPL + +P E + P AF+ F + V M
Sbjct: 217 LFTFGSFGPLAALKILYPRSEEERR--RPHICAFVAFMSRADVDRFM 261
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 34.7 bits (76), Expect = 0.093
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
KV+VGGLP D E+ F RFG + W + P G+AF+ + D
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARR-------PPGFAFVEYDD 48
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 34.7 bits (76), Expect = 0.093
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
KV+VGGLP D E+ F RFG + W + P G+AF+ + D
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARR-------PPGFAFVEYDD 48
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 34.7 bits (76), Expect = 0.093
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
KV+VGGLP D E+ F RFG + W + P G+AF+ + D
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARR-------PPGFAFVEYDD 48
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 79 VFVGGLPPDIDEDEITSSF-RRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVA 134
+FVG LP +I ED + + F + GP V+ K KG+AF+ F+ +SSV+
Sbjct: 248 IFVGNLPFEITEDALITFFSAQIGP--VEAVRIVRDKDTGKGKGFAFVNFKQDSSVS 302
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
+ K+F+GGLP + ED++ FGPL S KGYAF + D
Sbjct: 290 ANKIFIGGLPNYLTEDQVKELLCSFGPLKA---FSLNVDSQGNSKGYAFAEYLD 340
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
+ K+F+GGLP + ED++ FGPL S KGYAF + D
Sbjct: 290 ANKIFIGGLPNYLTEDQVKELLCSFGPLKA---FSLNVDSQGNSKGYAFAEYLD 340
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
+ K+F+GGLP + ED++ FGPL S KGYAF + D
Sbjct: 265 ANKIFIGGLPNYLTEDQVKELLCSFGPLKA---FSLNVDSQGNSKGYAFAEYLD 315
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
+ K+F+GGLP + ED++ FGPL S KGYAF + D
Sbjct: 268 ANKIFIGGLPNYLTEDQVKELLCSFGPLKA---FSLNVDSQGNSKGYAFAEYLD 318
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSV 133
+++++V G+ D ED +T F ++G V K+ P+G+ F+ F D SV
Sbjct: 113 TKRLYVSGVREDHTEDMLTEYFTKYG--TVTKSEIILDKATQKPRGFGFVTFDDHDSV 168
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPL--VVDWPHKAESKSYFPPKGYAFLLFQDESSVA 134
RK+FVGGL + +D + + +FG + ++ +S +G+ F+ F ++ V
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRS----RGFGFVTFSGKTEVD 78
Query: 135 ALME 138
A M+
Sbjct: 79 AAMK 82
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSV 133
+++++V G+ D ED +T F ++G V K+ P+G+ F+ F D SV
Sbjct: 75 TKRLYVSGVREDHTEDMLTEYFTKYG--TVTKSEIILDKATQKPRGFGFVTFDDHDSV 130
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSV 133
+++++V G+ D ED +T F ++G V K+ P+G+ F+ F D SV
Sbjct: 75 TKRLYVSGVREDHTEDMLTEYFTKYG--TVTKSEIILDKATQKPRGFGFVTFDDHDSV 130
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSV 133
+++++V G+ D ED +T F ++G V K+ P+G+ F+ F D SV
Sbjct: 113 TKRLYVSGVREDHTEDMLTEYFTKYG--TVTKSEIILDKATQKPRGFGFVTFDDHDSV 168
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPL--VVDWPHKAESKSYFPPKGYAFLLFQDESSVA 134
RK+FVGGL + +D + + +FG + ++ +S +G+ F+ F ++ V
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRS----RGFGFVTFSGKTEVD 78
Query: 135 ALME 138
A M+
Sbjct: 79 AAMK 82
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 76 SRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSV 133
+++++V G+ D ED +T F ++G V K+ P+G+ F+ F D SV
Sbjct: 113 TKRLYVSGVREDHTEDMLTEYFTKYG--TVTKSEIILDKATQKPRGFGFVTFDDHDSV 168
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPL--VVDWPHKAESKSYFPPKGYAFLLFQDESSVA 134
RK+FVGGL + +D + + +FG + ++ +S +G+ F+ F ++ V
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRS----RGFGFVTFSGKTEVD 78
Query: 135 ALME 138
A M+
Sbjct: 79 AAMK 82
>Z68879-10|CAA93082.2| 473|Caenorhabditis elegans Hypothetical
protein K08F4.2 protein.
Length = 473
Score = 32.3 bits (70), Expect = 0.50
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 59 PARSSPVSAGSEHGERFSRKVFVGGLPPDI-------DEDEITSSFRRFGPLV-VDWPHK 110
PA + S RK+++GG+ +I E EI F ++G + V P K
Sbjct: 308 PANELRQAQESSDANLNERKIYLGGITREIVPSNTAQAESEIKQVFYKYGEIEEVRMPRK 367
Query: 111 A-ESKSYFPPKGYAFLLFQDESSVAALMEACITDEDKLY 148
+S + +AF+ ++++ V A+ EA DE ++
Sbjct: 368 VLDSPNDTSKHAFAFITMRNKAGVKAIFEAATKDEQGVW 406
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 32.3 bits (70), Expect = 0.50
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 60 ARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPP 119
AR + S HG + K+F+GGL + + F RFG V+ +
Sbjct: 28 ARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGE--VNECMVMRDPATKRA 85
Query: 120 KGYAFLLFQDESSV 133
+G+ F+ F D SSV
Sbjct: 86 RGFGFITFVDPSSV 99
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 32.3 bits (70), Expect = 0.50
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 60 ARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPP 119
AR + S HG + K+F+GGL + + F RFG V+ +
Sbjct: 28 ARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGE--VNECMVMRDPATKRA 85
Query: 120 KGYAFLLFQDESSV 133
+G+ F+ F D SSV
Sbjct: 86 RGFGFITFVDPSSV 99
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 31.9 bits (69), Expect = 0.66
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVA 134
V+VG + ++ EDEI +F RFGP+ F +GYAF+ F+ + S A
Sbjct: 258 VYVGNIA-NLGEDEIRRAFDRFGPI--------NEVRTFKIQGYAFVKFETKESAA 304
>AF016441-6|AAX55687.1| 440|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform b protein.
Length = 440
Score = 31.9 bits (69), Expect = 0.66
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 41 VNRLSAAGLSMCVSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRF 100
VN SA + VS + S + G+EH + FSR VF+ L I + I S+ RF
Sbjct: 322 VNFFSA--ILCAVSLIEQGTLWSSIKFGAEHVD-FSRDVFLLSLSGAIGQIFIYSTIERF 378
Query: 101 GPLV 104
GP+V
Sbjct: 379 GPIV 382
>AF016441-5|AAX55688.1| 408|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform c protein.
Length = 408
Score = 31.9 bits (69), Expect = 0.66
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 41 VNRLSAAGLSMCVSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRF 100
VN SA + VS + S + G+EH + FSR VF+ L I + I S+ RF
Sbjct: 322 VNFFSA--ILCAVSLIEQGTLWSSIKFGAEHVD-FSRDVFLLSLSGAIGQIFIYSTIERF 378
Query: 101 GPLV 104
GP+V
Sbjct: 379 GPIV 382
>AF016441-4|AAX55686.1| 425|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform a protein.
Length = 425
Score = 31.9 bits (69), Expect = 0.66
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 41 VNRLSAAGLSMCVSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRF 100
VN SA + VS + S + G+EH + FSR VF+ L I + I S+ RF
Sbjct: 307 VNFFSA--ILCAVSLIEQGTLWSSIKFGAEHVD-FSRDVFLLSLSGAIGQIFIYSTIERF 363
Query: 101 GPLV 104
GP+V
Sbjct: 364 GPIV 367
>Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 270
Score = 31.5 bits (68), Expect = 0.87
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 52 CVSALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKA 111
CV AL S+ +S E F VFVG L D+ + + S+F +FG V
Sbjct: 4 CVPALKKKKISNAISFLCFFSEHFH--VFVGDLSKDVSNELLKSTFTKFGE--VSEAKVI 59
Query: 112 ESKSYFPPKGYAFLLFQDESS 132
KGY F+ F ++ +
Sbjct: 60 RDVQTQKSKGYGFVSFPNKQN 80
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 31.5 bits (68), Expect = 0.87
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
KVFV + +DE+ + F +FG V + K PKG AF+ F E+S
Sbjct: 684 KVFVRNVHFQATDDELKALFSKFG--TVTSVRRVTHKD-GKPKGIAFVDFDTEASA---- 736
Query: 138 EACITDEDKLYL 149
+ C+ DKL L
Sbjct: 737 QKCVASGDKLML 748
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLV 104
RK+F+GGL D ++++ + F ++GP+V
Sbjct: 49 RKLFIGGLSHDTTDEQLGNYFSQWGPVV 76
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLV 104
RK+F+GGL D ++++ + F ++GP+V
Sbjct: 69 RKLFIGGLSHDTTDEQLGNYFSQWGPVV 96
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFGPLV 104
RK+F+GGL D ++++ + F ++GP+V
Sbjct: 70 RKLFIGGLSHDTTDEQLGNYFSQWGPVV 97
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 81 VGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVA 134
V LP +++EDE+ F + G ++ + A K PKG+AF+ F+ A
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIF--IARDKVTGLPKGFAFVTFESRDDAA 231
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 54 SALGSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAES 113
+AL + PV GS + K+FVGGLP + + F +FG ++
Sbjct: 15 AALAQSTNAEPV-VGSR--DTMFTKIFVGGLPYHTSDKTLHEYFEQFGD--IEEAVVITD 69
Query: 114 KSYFPPKGYAFLLFQDESS 132
++ +GY F+ +D +S
Sbjct: 70 RNTQKSRGYGFVTMKDRAS 88
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 70 EHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
E G +++ VFV +D++++++ F +FG + + + PKG+ F+ F D
Sbjct: 232 ESGLKYTN-VFVKNFGEHLDQEKLSAMFSKFGEIT---SAVVMTDAQGKPKGFGFVAFAD 287
Query: 130 ESSVAALME 138
+ + +E
Sbjct: 288 QDAAGQAVE 296
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 70 EHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQD 129
E G +++ VFV +D++++++ F +FG + + + PKG+ F+ F D
Sbjct: 232 ESGLKYTN-VFVKNFGEHLDQEKLSAMFSKFGEIT---SAVVMTDAQGKPKGFGFVAFAD 287
Query: 130 ESSVAALME 138
+ + +E
Sbjct: 288 QDAAGQAVE 296
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 73 ERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDE 130
E ++FVGG P E E+ F +F + V + +S KGY F+ F+ E
Sbjct: 62 ELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQS----KGYGFITFETE 116
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFG 101
+KV+VG LP D+ E E+ F ++G
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYG 33
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 77 RKVFVGGLPPDIDEDEITSSFRRFG 101
+KV+VG LP D+ E E+ F ++G
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYG 33
>AF016448-14|AAB65960.2| 304|Caenorhabditis elegans Hypothetical
protein F41E6.12 protein.
Length = 304
Score = 30.3 bits (65), Expect = 2.0
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 219 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEV--KPYVLDDQMCDECA 276
T PE+K G + F ++ Y RFV+ HGDIDK+ E K YV CA
Sbjct: 150 TVPEVKIEDEKGVLVFVSE--YCVIERERFVKGCHGDIDKKEETFCKTYV------SACA 201
Query: 277 GARCGSKFAPFFCANVTCLQYYCEHCWATI 306
+ G +CA YY HC A +
Sbjct: 202 -STTGVLPVMTYCARY--YTYYPTHCKAQL 228
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 73 ERFSRKVFVGGLPPDIDEDEITSSFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQDE 130
E ++FVGG P E E+ F +F + V + +S KGY F+ F+ E
Sbjct: 63 ELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQS----KGYGFITFETE 117
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.7
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGY--AFLLFQDESSVAA 135
+++VG + +I ED + +F FGP+ K+ + S+ P G+ F + E AA
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPI------KSINMSWDPATGHHKTFAFVEYEVPEAA 156
Query: 136 LMEACITDEDKL---YLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRK--TVFVG 190
L+ + L L V+S ++ + P + A ++D + D +K V+V
Sbjct: 157 LLAQESMNGQMLGGRNLKVNSMMFQEMRL---PQNMPQAQPIID-MVQKDAKKYFRVYVS 212
Query: 191 GVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAIS 245
V L +L + + +G + + P + +G G + F+N S AI+
Sbjct: 213 SVHPDLSETDLKSVFE-AFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIA 266
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 29.9 bits (64), Expect = 2.7
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGY--AFLLFQDESSVAA 135
+++VG + +I ED + +F FGP+ K+ + S+ P G+ F + E AA
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPI------KSINMSWDPATGHHKTFAFVEYEVPEAA 156
Query: 136 LMEACITDEDKL---YLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRK--TVFVG 190
L+ + L L V+S ++ + P + A ++D + D +K V+V
Sbjct: 157 LLAQESMNGQMLGGRNLKVNSMMFQEMRL---PQNMPQAQPIID-MVQKDAKKYFRVYVS 212
Query: 191 GVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAIS 245
V L +L + + +G + + P + +G G + F+N S AI+
Sbjct: 213 SVHPDLSETDLKSVFE-AFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIA 266
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 29.9 bits (64), Expect = 2.7
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGY--AFLLFQDESSVAA 135
+++VG + +I ED + +F FGP+ K+ + S+ P G+ F + E AA
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPI------KSINMSWDPATGHHKTFAFVEYEVPEAA 156
Query: 136 LMEACITDEDKL---YLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRK--TVFVG 190
L+ + L L V+S ++ + P + A ++D + D +K V+V
Sbjct: 157 LLAQESMNGQMLGGRNLKVNSMMFQEMRL---PQNMPQAQPIID-MVQKDAKKYFRVYVS 212
Query: 191 GVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAIS 245
V L +L + + +G + + P + +G G + F+N S AI+
Sbjct: 213 SVHPDLSETDLKSVFE-AFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIA 266
>U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical
protein T12E12.3 protein.
Length = 818
Score = 29.5 bits (63), Expect = 3.5
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 134 AALMEACITDEDKLYLCVSSPTIRDKPVQIRPWRLADADFVLDASMPLDPRKTVFVGGVP 193
+ + E+C DE + SS +KP P A A+ VL +PL P+ V G P
Sbjct: 643 STIPESCSFDES---IQNSSRVEEEKPSSHVPSSSA-AEPVL--KLPLVPQLCRTVPGAP 696
Query: 194 RPLKAVELAMIMDRLYGGVCYAGID--TDPELKYPKGAGRVAFSNQQSYIAAISARFV 249
P K V +++ D L +D D +L A AF NQ+++ +A+ V
Sbjct: 697 EPAKIVPISVDCDALKLQAVQQVLDDADDEDLDLMGSALEKAFGNQENWTDKSAAKTV 754
>U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms protein
1 protein.
Length = 442
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 37 TQDVVNRLSAAGLSMCVSALGSPARSSPVSAGSEHGERFSRKVFV 81
++ V + +A SMCV+A P RS+ +S H + R + +
Sbjct: 340 SETVFRKRLSARYSMCVAAKACPVRSNSLSCKHRHSNKTGRALII 384
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 79 VFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESS 132
+++GGL + E ++ + F ++G ++ + K KG+AFL ++D+ S
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNI--NLIRDKDTGKSKGFAFLCYKDQRS 91
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
++FVG LP ++ E E+ F PH ++ Y KG+AFL + +
Sbjct: 117 RLFVGNLPNEVKETELKELFS---------PHGDIAECYLSGKGFAFLRLDTRAHAESAK 167
Query: 138 EA 139
EA
Sbjct: 168 EA 169
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 78 KVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVAALM 137
++FVG LP ++ E E+ F PH ++ Y KG+AFL + +
Sbjct: 117 RLFVGNLPNEVKETELKELFS---------PHGDIAECYLSGKGFAFLRLDTRAHAESAK 167
Query: 138 EA 139
EA
Sbjct: 168 EA 169
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 57 GSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSY 116
G P + + + +R +FVG +P D+ E EI F G + + + K+
Sbjct: 149 GRPTKEPSTWRLKQDDDEATRTLFVGNMPSDVKEREIRHVFEEHGKV-----EEVDIKTP 203
Query: 117 F-PPKGYAFLLFQ 128
YAF++FQ
Sbjct: 204 INTDAAYAFVMFQ 216
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 57 GSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSY 116
G P + + + +R +FVG +P D+ E EI F G + + + K+
Sbjct: 149 GRPTKEPSTWRLKQDDDEATRTLFVGNMPSDVKEREIRHVFEEHGKV-----EEVDIKTP 203
Query: 117 F-PPKGYAFLLFQ 128
YAF++FQ
Sbjct: 204 INTDAAYAFVMFQ 216
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 57 GSPARSSPVSAGSEHGERFSRKVFVGGLPPDIDEDEITSSFRRFGPLVVDWPHKAESKSY 116
G P + + + +R +FVG +P D+ E EI F G + + + K+
Sbjct: 126 GRPTKEPSTWRLKQDDDEATRTLFVGNMPSDVKEREIRHVFEEHGKV-----EEVDIKTP 180
Query: 117 F-PPKGYAFLLFQ 128
YAF++FQ
Sbjct: 181 INTDAAYAFVMFQ 193
>AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein.
Length = 442
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 37 TQDVVNRLSAAGLSMCVSALGSPARSSPVSAGSEHGERFSRKVFV 81
++ V + +A SMCV+A P RS+ +S H + R + +
Sbjct: 340 SETVFRKRLSARYSMCVAAKACPVRSNSLSCKHRHSNKTGRALII 384
>Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical
protein K08G2.7 protein.
Length = 331
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 282 SKFAPFFCANVTCLQYYCEHC 302
S F F ++VTCL++YC C
Sbjct: 286 SSFLKLFKSDVTCLKFYCPCC 306
>U97406-2|AAC24293.2| 253|Caenorhabditis elegans Hypothetical
protein F40E3.2 protein.
Length = 253
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/71 (23%), Positives = 32/71 (45%)
Query: 190 GGVPRPLKAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFV 249
G P ++A E + L + Y + T P+ K+P A S ++ ++ S R +
Sbjct: 93 GDAPNEVRASETERTLGLLKNVLMYVFVATKPQSKHPGVAQEDLMSYMEASMSTHSDRKL 152
Query: 250 QLQHGDIDKRV 260
L H + K++
Sbjct: 153 SLDHMEFLKKL 163
>AL031627-10|CAA20949.1| 301|Caenorhabditis elegans Hypothetical
protein Y102A5C.19 protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 203 MIMDRLYGGVCYAGIDTDPELKYPKGAGRV 232
+I+D YGGV Y +D +++Y K +GRV
Sbjct: 59 LILDENYGGVTYEQVDGACQVEY-KNSGRV 87
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.138 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,177,313
Number of Sequences: 27539
Number of extensions: 353388
Number of successful extensions: 722
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 104
length of query: 334
length of database: 12,573,161
effective HSP length: 82
effective length of query: 252
effective length of database: 10,314,963
effective search space: 2599370676
effective search space used: 2599370676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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