GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001827-TA|BGIBMGA001827-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (334 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 301 HCWATIHSRPG 311
           HCWATI+   G
Sbjct: 258 HCWATIYKTEG 268


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 301 HCWATIHSRPG 311
           HCWATI+   G
Sbjct: 258 HCWATIYKTEG 268


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 118 PPKGYAFLLFQDESSVAALMEACITDEDKLYLCVSSPTIRDKPV---QIRPWRLADADFV 174
           P   ++F  F+D S + +  +  I   D+L++  S    R  PV   ++  + L  ++ +
Sbjct: 107 PYPDWSFAEFKDCSKIVSAFKIAIDKFDRLWVLDSGLVNRTVPVCAPKLHVFDLKTSNHL 166

Query: 175 LDASMPLD--PRKTVFVGG-VPRPLKAVELA 202
               +P D     T   GG V   ++A++LA
Sbjct: 167 KQIEIPHDIAVNATTGKGGLVSLAVQAIDLA 197


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,417
Number of Sequences: 429
Number of extensions: 3924
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 334
length of database: 140,377
effective HSP length: 58
effective length of query: 276
effective length of database: 115,495
effective search space: 31876620
effective search space used: 31876620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)