GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001826-TA|BGIBMGA001826-PA|undefined
         (93 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791...    26   3.5  
05_01_0539 + 4653028-4653158,4654329-4654973,4655323-4655448,465...    25   8.1  

>02_05_1010 +
           33477878-33478446,33478709-33478834,33478905-33479190,
           33479293-33479484,33479641-33479870,33480379-33480718,
           33481673-33481789,33481940-33482014
          Length = 644

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 73  IVCNLKCMVGTIGFRRDISN 92
           I C L C++  +GFR D +N
Sbjct: 255 ICCCLPCIISVMGFREDTNN 274


>05_01_0539 +
           4653028-4653158,4654329-4654973,4655323-4655448,
           4655537-4655813,4655916-4656143
          Length = 468

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 73  IVCNLKCMVGTIGFRRDIS 91
           I C L C++  +GFR D++
Sbjct: 324 ICCCLPCIISILGFREDLN 342


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.141    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,708
Number of Sequences: 37544
Number of extensions: 21578
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 2
length of query: 93
length of database: 14,793,348
effective HSP length: 70
effective length of query: 23
effective length of database: 12,165,268
effective search space: 279801164
effective search space used: 279801164
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)