Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001825-TA|BGIBMGA001825-PA|IPR006649|Like-Sm
ribonucleoprotein, eukaryotic and archaea-type, core,
IPR010920|Like-Sm ribonucleoprotein-related, core, IPR001163|Like-Sm
ribonucleoprotein, core
         (139 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    21   4.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.4  

>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 34  NWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETQVKARGRNEV 93
           N++   + E  CTS   +    +P+    G T    +  +    +++  TQ +AR    +
Sbjct: 44  NYIKCLMDEGPCTSEGRELKKTLPDALSSGCTKCNQKQKETAEKVIRHLTQKRARDWERL 103

Query: 94  SK 95
           SK
Sbjct: 104 SK 105


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 5/18 (27%), Positives = 13/18 (72%)

Query: 31   SCDNWMNINLREVICTSR 48
            +CD   N+N+ +++ T++
Sbjct: 1327 TCDGTSNVNVVDIVTTAK 1344


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,514
Number of Sequences: 317
Number of extensions: 900
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 139
length of database: 114,650
effective HSP length: 51
effective length of query: 88
effective length of database: 98,483
effective search space:  8666504
effective search space used:  8666504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)