Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001825-TA|BGIBMGA001825-PA|IPR006649|Like-Sm
ribonucleoprotein, eukaryotic and archaea-type, core,
IPR010920|Like-Sm ribonucleoprotein-related, core, IPR001163|Like-Sm
ribonucleoprotein, core
(139 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9Y4Z0 Cluster: U6 snRNA-associated Sm-like protein LSm... 190 9e-48
UniRef50_Q9QXA5 Cluster: U6 snRNA-associated Sm-like protein LSm... 186 2e-46
UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like pr... 174 6e-43
UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole gen... 171 4e-42
UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein... 146 2e-34
UniRef50_A6S1F2 Cluster: Putative uncharacterized protein; n=3; ... 137 9e-32
UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1; ... 125 3e-28
UniRef50_Q5KJW6 Cluster: Glycine rich protein, putative; n=2; Di... 120 1e-26
UniRef50_A3LPF4 Cluster: Predicted protein; n=3; Saccharomycetac... 113 9e-25
UniRef50_Q4MZK0 Cluster: U6 snRNA-associated protein, putative; ... 111 5e-24
UniRef50_Q4UBR6 Cluster: U6 snrna-associated sm-like protein lsm... 109 2e-23
UniRef50_UPI000156133C Cluster: PREDICTED: similar to LSM4 homol... 108 5e-23
UniRef50_Q6CGF6 Cluster: Similar to tr|Q8IGS9 Drosophila melanog... 96 3e-19
UniRef50_Q751K2 Cluster: AGL296Wp; n=1; Eremothecium gossypii|Re... 88 7e-17
UniRef50_A7AWX9 Cluster: U6 snRNA-associated Sm-like protein LSm... 81 6e-15
UniRef50_Q96UG3 Cluster: Putative uncharacterized protein putati... 78 6e-14
UniRef50_A7TI36 Cluster: Putative uncharacterized protein; n=1; ... 75 4e-13
UniRef50_A0CSI7 Cluster: Chromosome undetermined scaffold_26, wh... 71 7e-12
UniRef50_Q4CKU9 Cluster: U6 snRNA-associated Sm-like protein LSm... 71 9e-12
UniRef50_Q4Q5L1 Cluster: U6 snRNA-associated Sm-like protein LSm... 71 1e-11
UniRef50_Q3MP95 Cluster: Putative uncharacterized protein CaJ7.s... 68 6e-11
UniRef50_P40070 Cluster: U6 snRNA-associated Sm-like protein LSm... 68 6e-11
UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=1... 67 1e-10
UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole geno... 64 1e-09
UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 63 2e-09
UniRef50_Q5CKM4 Cluster: ENSANGP00000016613; n=2; Cryptosporidiu... 62 4e-09
UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3, p... 62 4e-09
UniRef50_Q8SSB9 Cluster: U6 snRNA ASSOCIATED SM-LIKE PROTEIN; n=... 60 1e-08
UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266, w... 60 2e-08
UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145, w... 60 2e-08
UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM doma... 59 4e-08
UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 59 4e-08
UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:... 56 2e-07
UniRef50_Q1E7Q6 Cluster: Putative uncharacterized protein; n=1; ... 54 8e-07
UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 54 8e-07
UniRef50_Q6BXY3 Cluster: Similar to sp|Q02260 Saccharomyces cere... 54 1e-06
UniRef50_UPI0000499249 Cluster: U6 snRNA-associated Sm-like prot... 53 2e-06
UniRef50_UPI0000498C5A Cluster: small nuclear ribonucleoprotein;... 53 2e-06
UniRef50_UPI0000E480CE Cluster: PREDICTED: similar to LSM10, U7 ... 52 3e-06
UniRef50_UPI0000499737 Cluster: U6 snRNA-associated Sm-like prot... 52 3e-06
UniRef50_A6S4U0 Cluster: Putative uncharacterized protein; n=1; ... 52 4e-06
UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 52 6e-06
UniRef50_Q969L4 Cluster: U7 snRNA-associated Sm-like protein LSm... 52 6e-06
UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein ... 50 2e-05
UniRef50_A1C7L1 Cluster: Small nuclear ribonucleoprotein (LSM2),... 50 2e-05
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 50 2e-05
UniRef50_A7SC68 Cluster: Predicted protein; n=1; Nematostella ve... 49 3e-05
UniRef50_A5DAN5 Cluster: Putative uncharacterized protein; n=1; ... 48 5e-05
UniRef50_A4RMI1 Cluster: Putative uncharacterized protein; n=3; ... 48 5e-05
UniRef50_Q9Y333 Cluster: U6 snRNA-associated Sm-like protein LSm... 48 5e-05
UniRef50_Q10013 Cluster: Probable small nuclear ribonucleoprotei... 48 7e-05
UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putati... 48 9e-05
UniRef50_Q9ES84 Cluster: SnRNP core protein SMX5d; n=12; Eukaryo... 47 2e-04
UniRef50_Q8SW39 Cluster: Similarity to SMALL NUCLEAR RIBONUCLEOP... 47 2e-04
UniRef50_Q8SS46 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN F; n=1;... 46 2e-04
UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear ri... 46 3e-04
UniRef50_P38203 Cluster: U6 snRNA-associated Sm-like protein LSm... 46 4e-04
UniRef50_A2DK14 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 45 5e-04
UniRef50_P62314 Cluster: Small nuclear ribonucleoprotein Sm D1; ... 45 5e-04
UniRef50_Q3LW05 Cluster: Spliceosomal snRNA-associated Sm core p... 44 9e-04
UniRef50_Q16J66 Cluster: Putative uncharacterized protein; n=2; ... 43 0.002
UniRef50_A4HNB4 Cluster: Sm-f snRNP core complex protein, putati... 43 0.003
UniRef50_A2FH88 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 43 0.003
UniRef50_A0CX56 Cluster: Chromosome undetermined scaffold_3, who... 43 0.003
UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F, puta... 42 0.005
UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 42 0.005
UniRef50_UPI00015BACE3 Cluster: Like-Sm ribonucleoprotein, core;... 42 0.006
UniRef50_Q9AW42 Cluster: Putative small nuclear ribonucleoprotei... 42 0.006
UniRef50_Q9VU02 Cluster: Probable small nuclear ribonucleoprotei... 42 0.006
UniRef50_A2E4T4 Cluster: Putative uncharacterized protein; n=1; ... 41 0.008
UniRef50_Q4N728 Cluster: U6 small nuclear ribonucleoprotein, put... 41 0.011
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 41 0.011
UniRef50_Q98RL6 Cluster: Small nuclear ribonucleoprotein D-like ... 40 0.014
UniRef50_Q5CRM6 Cluster: Small nuclear ribonucleoprotein D1. SM ... 40 0.014
UniRef50_Q4YPG0 Cluster: U6 snRNA-associated sm-like protein Lsm... 40 0.014
UniRef50_Q22R48 Cluster: U6 snRNA-associated Sm-like protein LSm... 40 0.014
UniRef50_A4VD81 Cluster: Putative uncharacterized protein; n=1; ... 40 0.014
UniRef50_Q5CYT7 Cluster: SnRNP core protein; n=1; Cryptosporidiu... 40 0.018
UniRef50_Q9SY09 Cluster: Small nuclear riboprotein Sm-D1; n=9; E... 39 0.043
UniRef50_Q8SSM1 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN; n=1; E... 39 0.043
UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1; T... 39 0.043
UniRef50_UPI00015533A8 Cluster: PREDICTED: similar to Snrpf prot... 38 0.056
UniRef50_UPI0000499412 Cluster: U6 snRNA-associated Sm-like prot... 38 0.056
UniRef50_P62306 Cluster: Small nuclear ribonucleoprotein F; n=20... 38 0.056
UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;... 38 0.056
UniRef50_Q0UDD7 Cluster: Putative uncharacterized protein; n=1; ... 38 0.075
UniRef50_Q7QST9 Cluster: GLP_127_22232_21855; n=1; Giardia lambl... 38 0.099
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 37 0.13
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 37 0.13
UniRef50_Q4QBP1 Cluster: Small nuclear ribonucleoprotein, putati... 37 0.17
UniRef50_Q6BPY4 Cluster: Debaryomyces hansenii chromosome E of s... 36 0.23
UniRef50_P54999 Cluster: Small nuclear ribonucleoprotein F; n=11... 36 0.23
UniRef50_Q38339 Cluster: Putative single stranded DNA binding pr... 36 0.40
UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog... 36 0.40
UniRef50_Q7QTN4 Cluster: GLP_0_18571_18248; n=1; Giardia lamblia... 35 0.53
UniRef50_UPI0000DB6D99 Cluster: PREDICTED: similar to LSM10, U7 ... 35 0.70
UniRef50_Q4S130 Cluster: Chromosome 1 SCAF14770, whole genome sh... 35 0.70
UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotei... 35 0.70
UniRef50_Q8MVI2 Cluster: U7 snRNP-specific SM-like protein; n=1;... 34 0.92
UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN; ... 34 0.92
UniRef50_A7D237 Cluster: Like-Sm ribonucleoprotein, core; n=1; H... 34 0.92
UniRef50_A3H8P4 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 34 0.92
UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm... 34 0.92
UniRef50_Q98S70 Cluster: Probable small nuclear ribonucleoprotei... 34 1.2
UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;... 34 1.2
UniRef50_Q010Y9 Cluster: Ypt/Rab GTPase activating protein; n=13... 34 1.2
UniRef50_Q6FQ95 Cluster: Similar to sp|Q02260 Saccharomyces cere... 34 1.2
UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep: A... 33 1.6
UniRef50_Q74N54 Cluster: NEQ037; n=1; Nanoarchaeum equitans|Rep:... 33 1.6
UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2; T... 33 1.6
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A... 33 1.6
UniRef50_P10676 Cluster: Neither inactivation nor afterpotential... 33 1.6
UniRef50_Q5DHE3 Cluster: SJCHGC05980 protein; n=2; Schistosoma j... 33 2.1
UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein, ... 33 2.1
UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm... 33 2.1
UniRef50_Q7RI57 Cluster: Putative uncharacterized protein PY0377... 33 2.8
UniRef50_Q5V3W7 Cluster: SnRNP-like protein; n=2; Halobacteriace... 33 2.8
UniRef50_Q7RIW4 Cluster: Putative uncharacterized protein PY0350... 32 3.7
UniRef50_Q38BA6 Cluster: Small nuclear ribonucleoprotein, putati... 32 3.7
UniRef50_A1CE19 Cluster: LSM domain protein; n=3; Trichocomaceae... 32 3.7
UniRef50_Q9ZCB1 Cluster: Glycyl-tRNA synthetase beta chain; n=11... 32 3.7
UniRef50_Q39ZG7 Cluster: ATPase associated with various cellular... 32 4.9
UniRef50_A4RU45 Cluster: Predicted protein; n=1; Ostreococcus lu... 32 4.9
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 32 4.9
UniRef50_Q4Y7X8 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 32 4.9
UniRef50_A7ARJ0 Cluster: Small nuclear ribonucleoprotein F, puta... 32 4.9
UniRef50_A4VAK3 Cluster: Small nuclear ribonucleoprotein D1; n=7... 31 6.5
UniRef50_A7EAP1 Cluster: Putative uncharacterized protein; n=2; ... 31 6.5
UniRef50_A6S0C4 Cluster: Predicted protein; n=2; Ascomycota|Rep:... 31 6.5
>UniRef50_Q9Y4Z0 Cluster: U6 snRNA-associated Sm-like protein
LSm4; n=5; Coelomata|Rep: U6 snRNA-associated Sm-like
protein LSm4 - Homo sapiens (Human)
Length = 139
Score = 190 bits (463), Expect = 9e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 99
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>UniRef50_Q9QXA5 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=128; Eukaryota|Rep: U6 snRNA-associated Sm-like
protein LSm4 - Mus musculus (Mouse)
Length = 137
Score = 186 bits (452), Expect = 2e-46
Identities = 87/102 (85%), Positives = 91/102 (89%), Gaps = 5/102 (4%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGR----NEVSKGRG 98
IRGSTIKYLRIPDE+IDMV+EE K RGR + KGRG
Sbjct: 61 IRGSTIKYLRIPDEIIDMVREEA-AKGRGRGGPQQKQQKGRG 101
>UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm4; n=5; Eukaryota|Rep: Probable U6
snRNA-associated Sm-like protein LSm4 - Oryza sativa
subsp. japonica (Rice)
Length = 147
Score = 174 bits (423), Expect = 6e-43
Identities = 77/99 (77%), Positives = 85/99 (85%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL+TAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 99
IRG+TIKYLR+PDEVID V+EET R GRG+
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGR 99
>UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_27, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 281
Score = 171 bits (416), Expect = 4e-42
Identities = 77/99 (77%), Positives = 89/99 (89%), Gaps = 1/99 (1%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
LPLSLL+TAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECYI
Sbjct: 88 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 147
Query: 62 RGSTIKYLRIPDEVIDMVKEETQVKA-RGRNEVSKGRGQ 99
RG+TIKYLR+PDEVID V+EET+ +A R V +GRG+
Sbjct: 148 RGNTIKYLRVPDEVIDKVQEETKNRADRKPPGVGRGRGR 186
>UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 177
Score = 146 bits (353), Expect = 2e-34
Identities = 65/102 (63%), Positives = 82/102 (80%), Gaps = 3/102 (2%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLLRT Q H ++VELKNGETYNG LV+CDNWMNINL+ VI TS+D DKFW++ CY
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQ---VKARGRNEVSKGRGQ 99
IRG+TIKY+ +PDE+ID+V EE Q + RN+ ++GRG+
Sbjct: 61 IRGNTIKYISVPDEIIDLVAEEEQTLRTTYQQRNDSNRGRGR 102
>UniRef50_A6S1F2 Cluster: Putative uncharacterized protein; n=3;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 690
Score = 137 bits (331), Expect = 9e-32
Identities = 62/100 (62%), Positives = 78/100 (78%), Gaps = 4/100 (4%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
+LPL LL AQ HPMLVELK+GET NGHLVSCD WMN+ L+EV+ TS DGDKF R+PE Y
Sbjct: 2 VLPLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIY 61
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQN 100
++G+ IKYLR+PDE+ID+VK++ Q G+ +GRG N
Sbjct: 62 VKGNNIKYLRMPDEIIDLVKDQQQ----GQQSNYRGRGGN 97
>UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 187
Score = 125 bits (302), Expect = 3e-28
Identities = 56/81 (69%), Positives = 68/81 (83%), Gaps = 1/81 (1%)
Query: 6 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
LL A HPMLVELK+GET NG LV+CD WMN+ LREV+ TS DGDKF R+PE Y+RGST
Sbjct: 66 LLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGST 125
Query: 66 IKYLRIPDEVIDMVKEETQVK 86
IKYLR+PDE++D+VK++ QVK
Sbjct: 126 IKYLRVPDEIVDVVKDQ-QVK 145
>UniRef50_Q5KJW6 Cluster: Glycine rich protein, putative; n=2;
Dikarya|Rep: Glycine rich protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 117
Score = 120 bits (288), Expect = 1e-26
Identities = 56/96 (58%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL AQ PMLVELKNG T+NGHLV CD +MN+ LREV TS DG++FW+M E +
Sbjct: 1 MLPLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMF 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKG 96
I+G+ IKY RI D +++ EE Q KAR N G
Sbjct: 61 IKGNIIKYFRIADNILEQAAEE-QDKARAANRARGG 95
>UniRef50_A3LPF4 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 147
Score = 113 bits (273), Expect = 9e-25
Identities = 51/99 (51%), Positives = 71/99 (71%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
LPL LL A+ +L+ELKNGET NG LV+CD+WMN+ L++VI TS +G+ F ++PE YI
Sbjct: 2 LPLYLLTAAKTKQILIELKNGETLNGGLVNCDSWMNLTLKDVIQTSSNGETFLKIPEVYI 61
Query: 62 RGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQN 100
RG+ IKYLR+P+E++D KE+ + RN K RG +
Sbjct: 62 RGNHIKYLRLPEEIMDYAKEQNILNMEQRNRNQKRRGNS 100
>UniRef50_Q4MZK0 Cluster: U6 snRNA-associated protein, putative;
n=1; Theileria parva|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 141
Score = 111 bits (267), Expect = 5e-24
Identities = 46/91 (50%), Positives = 70/91 (76%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
+LPL+LLR ++ P L+ELKNGETY+G L SCD +MN+++ V+CTS+ G FW++ EC+
Sbjct: 2 VLPLTLLRAGKSQPTLIELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECF 61
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRN 91
IRG+T+K LR+P+EV ++ KEE + + +N
Sbjct: 62 IRGNTVKSLRLPNEVAEIAKEEKRPRKTRKN 92
>UniRef50_Q4UBR6 Cluster: U6 snrna-associated sm-like protein
lsm4, putative; n=1; Theileria annulata|Rep: U6
snrna-associated sm-like protein lsm4, putative -
Theileria annulata
Length = 105
Score = 109 bits (263), Expect = 2e-23
Identities = 45/82 (54%), Positives = 66/82 (80%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
+LPL+LLR ++ P L+ELKNGETY+G L SCD +MN+++ V+CTS+ G FW++ EC+
Sbjct: 2 VLPLTLLRAGKSQPTLIELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECF 61
Query: 61 IRGSTIKYLRIPDEVIDMVKEE 82
IRG+T+K LR+P+EV ++ KEE
Sbjct: 62 IRGNTVKSLRLPNEVAEIAKEE 83
>UniRef50_UPI000156133C Cluster: PREDICTED: similar to LSM4 homolog,
U6 small nuclear RNA associated (S. cerevisiae); n=1;
Equus caballus|Rep: PREDICTED: similar to LSM4 homolog,
U6 small nuclear RNA associated (S. cerevisiae) - Equus
caballus
Length = 196
Score = 108 bits (259), Expect = 5e-23
Identities = 49/55 (89%), Positives = 50/55 (90%), Gaps = 1/55 (1%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRD-GDKFW 54
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSR FW
Sbjct: 46 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRSPSPMFW 100
>UniRef50_Q6CGF6 Cluster: Similar to tr|Q8IGS9 Drosophila
melanogaster RE35747p; n=1; Yarrowia lipolytica|Rep:
Similar to tr|Q8IGS9 Drosophila melanogaster RE35747p -
Yarrowia lipolytica (Candida lipolytica)
Length = 131
Score = 95.9 bits (228), Expect = 3e-19
Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
+LPLSLL AQ PMLVELK+GE+ GHL+ CD+WMN+ L+EV S G+ + E Y
Sbjct: 3 VLPLSLLNAAQGQPMLVELKSGESLRGHLLKCDHWMNLTLKEVEEFSASGENTATVSEYY 62
Query: 61 IRGSTIKYLRIPDEVIDMVKEE--TQVKARGRNEVSKGRGQ 99
+RGS IK L++PDE++ +K++ Q + R R + + GQ
Sbjct: 63 VRGSNIKALQLPDELLHSIKQQYSQQREQRQRQQQLEQGGQ 103
>UniRef50_Q751K2 Cluster: AGL296Wp; n=1; Eremothecium
gossypii|Rep: AGL296Wp - Ashbya gossypii (Yeast)
(Eremothecium gossypii)
Length = 168
Score = 87.8 bits (208), Expect = 7e-17
Identities = 39/82 (47%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPL LL A+ + +ELKNGET G LV+ DNWMN+ L+ V+ D+ ++PE Y
Sbjct: 1 MLPLYLLTNAKGQKLFIELKNGETIEGELVNVDNWMNLTLQSVV--HAGSDQTLQLPEIY 58
Query: 61 IRGSTIKYLRIPDEVIDMVKEE 82
+RGS IKY+R+ D++I+ VK++
Sbjct: 59 VRGSFIKYIRLQDDIIEKVKQQ 80
>UniRef50_A7AWX9 Cluster: U6 snRNA-associated Sm-like protein
LSm4, putative; n=1; Babesia bovis|Rep: U6
snRNA-associated Sm-like protein LSm4, putative -
Babesia bovis
Length = 104
Score = 81.4 bits (192), Expect = 6e-15
Identities = 32/63 (50%), Positives = 47/63 (74%)
Query: 22 GETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKE 81
GETY+G L SCD +MN+++ ICTS+ GD+FW++ EC+IRG+ +K R PDEV + E
Sbjct: 11 GETYSGILSSCDAFMNVHMINAICTSKKGDEFWKLSECFIRGNNVKSFRFPDEVATVALE 70
Query: 82 ETQ 84
E++
Sbjct: 71 ESK 73
>UniRef50_Q96UG3 Cluster: Putative uncharacterized protein putative
LSM4; n=1; Kluyveromyces lactis|Rep: Putative
uncharacterized protein putative LSM4 - Kluyveromyces
lactis (Yeast) (Candida sphaerica)
Length = 183
Score = 78.2 bits (184), Expect = 6e-14
Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPL LL A+ M VELKNGET G L DNWMN+ L V T + ++P Y
Sbjct: 1 MLPLYLLTNAKGQTMHVELKNGETVEGTLSDVDNWMNLTLSNV--THVASGETLKLPSFY 58
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQN 100
++GS IKY+ + D++ID VK++ G+++ + N
Sbjct: 59 LKGSFIKYVNLQDDIIDKVKQQWGQNRGGKDDRRRNNNYN 98
>UniRef50_A7TI36 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 193
Score = 75.4 bits (177), Expect = 4e-13
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG-------DKF 53
MLPL LL A+ + +ELKNGET G L + DNWMN+ L +VI D +
Sbjct: 1 MLPLYLLTNAKGQKITIELKNGETIKGVLTNVDNWMNLTLSDVIQYDSDALNNGAEKPEG 60
Query: 54 WRMPECYIRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRG 98
+PE Y+RG+ IKY+ + D++I+ V+++ + N S G
Sbjct: 61 LSVPEIYLRGTYIKYINLQDDIIENVRQQINSSSNNNNSGSGNTG 105
>UniRef50_A0CSI7 Cluster: Chromosome undetermined scaffold_26,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_26,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 128
Score = 71.3 bits (167), Expect = 7e-12
Identities = 33/85 (38%), Positives = 54/85 (63%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
+ PLSLL TA+ +++E+K G+TY+G L D +MN+ L V TS+DG+ F + E
Sbjct: 4 IFPLSLLLTAKGSDVVIEVKAGDTYDGKLELLDKFMNVKLTNVKHTSKDGNSFHGIKELL 63
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQV 85
I+G++IKY R+ + +EE ++
Sbjct: 64 IKGNSIKYFRLNPDAEKKAQEEAEI 88
>UniRef50_Q4CKU9 Cluster: U6 snRNA-associated Sm-like protein LSm4,
putative; n=3; Trypanosoma|Rep: U6 snRNA-associated
Sm-like protein LSm4, putative - Trypanosoma cruzi
Length = 164
Score = 70.9 bits (166), Expect = 9e-12
Identities = 32/95 (33%), Positives = 56/95 (58%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
++PL +LR + + VEL NGET NG ++ D MN+ L++ I T +GD FW+ E
Sbjct: 58 VIPLDVLRNCRGKVVSVELANGETINGTVMRVDRLMNLLLKQCIRTGAEGDVFWKSRESL 117
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSK 95
IRG++++ +R+ + + M + V+ + R + K
Sbjct: 118 IRGASVRNVRMDERALVMPEARAAVRNKSRPDTKK 152
>UniRef50_Q4Q5L1 Cluster: U6 snRNA-associated Sm-like protein LSm4p;
n=3; Leishmania|Rep: U6 snRNA-associated Sm-like protein
LSm4p - Leishmania major
Length = 189
Score = 70.5 bits (165), Expect = 1e-11
Identities = 30/87 (34%), Positives = 53/87 (60%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P+ +LR + + +EL +GET NG ++ D MN+ +++ T DG+ FW+ EC+IR
Sbjct: 83 PIEILRNCRGKEVSIELADGETVNGTVMRTDRAMNVVIKQCTRTGADGESFWKSRECFIR 142
Query: 63 GSTIKYLRIPDEVIDMVKEETQVKARG 89
G+++K +R+ D + V ++ KA G
Sbjct: 143 GASVKNVRMTDSALVAVPVLSKRKAAG 169
>UniRef50_Q3MP95 Cluster: Putative uncharacterized protein
CaJ7.s010; n=1; Candida albicans|Rep: Putative
uncharacterized protein CaJ7.s010 - Candida albicans
(Yeast)
Length = 95
Score = 68.1 bits (159), Expect = 6e-11
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 36 MNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSK 95
MN+ L VI T G+KF ++PE YIRG IKYLRIPD+++ KE++ + RN K
Sbjct: 1 MNLTLHNVIQTDSRGEKFMKIPEIYIRGIHIKYLRIPDDIMGYAKEQSMINMENRNRYQK 60
Query: 96 GRG 98
RG
Sbjct: 61 RRG 63
>UniRef50_P40070 Cluster: U6 snRNA-associated Sm-like protein
LSm4; n=3; Saccharomycetales|Rep: U6 snRNA-associated
Sm-like protein LSm4 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 187
Score = 68.1 bits (159), Expect = 6e-11
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSR----------DG 50
MLPL LL A+ M +ELKNGE G L + DNWMN+ L V S +
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 51 DKFWRMPECYIRGSTIKYLRIPDEVIDMVKEE 82
K ++ E YIRG+ IK++++ D +ID VK++
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQDNIIDKVKQQ 92
>UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative;
n=12; Eukaryota|Rep: Pre-mRNA splicing factor, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 124
Score = 66.9 bits (156), Expect = 1e-10
Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P+ LL + H + VELK GE Y G L+ ++ +NI LRE+ T+RDG + ++ + YI
Sbjct: 6 VPVKLLHESLGHIITVELKTGEMYRGKLMEAEDTLNIALREITVTARDG-RVSQLEQVYI 64
Query: 62 RGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRG 98
RGS I+++ +P D++ + K G N + +GRG
Sbjct: 65 RGSMIRFIIVP----DLLAQAPMFKRIGPNAM-RGRG 96
>UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole genome
shotgun sequence; n=6; Eukaryota|Rep: Chromosome chr6
scaffold_28, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 199
Score = 63.7 bits (148), Expect = 1e-09
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
+P+ LL A H ++VELK+GE Y G ++ C DNW N L + T +DG K ++ +
Sbjct: 7 IPVKLLHEAAGHVVIVELKSGELYRGSMIECKDNW-NCQLENITFTVKDG-KVSQLEHVF 64
Query: 61 IRGSTIKYLRIPD--EVIDMVKE-ETQVKARGRNEVSKGRGQ 99
IRG ++++ IPD + M K + +VK +G + + GRG+
Sbjct: 65 IRGIKVRFMVIPDMRKNAPMFKRLDARVKGKG-SALGVGRGR 105
>UniRef50_P43321 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=11; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein Sm D3 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 101
Score = 63.3 bits (147), Expect = 2e-09
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P+ LL AQ H + +EL G TY G LV ++ MN+ LR+VI T G M + ++
Sbjct: 6 IPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQG-AVTHMDQIFV 64
Query: 62 RGSTIKYLRIPD 73
RGS IK++ +PD
Sbjct: 65 RGSQIKFIVVPD 76
>UniRef50_Q5CKM4 Cluster: ENSANGP00000016613; n=2;
Cryptosporidium|Rep: ENSANGP00000016613 -
Cryptosporidium hominis
Length = 77
Score = 62.1 bits (144), Expect = 4e-09
Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 36 MNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSK 95
MN+ L VIC SRDG+ F++M ECYIRG+ IK +RI DE I+ K++ + R ++
Sbjct: 1 MNLALNNVICNSRDGNGFFKMVECYIRGNNIKLIRISDENINTAKDDMTQRETARLG-NR 59
Query: 96 GRGQN 100
GR +N
Sbjct: 60 GRPRN 64
>UniRef50_A1CHW9 Cluster: Small nuclear ribonucleoprotein SmD3,
putative; n=12; Eukaryota|Rep: Small nuclear
ribonucleoprotein SmD3, putative - Aspergillus clavatus
Length = 136
Score = 62.1 bits (144), Expect = 4e-09
Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P+ LL AQ H + +E+ +G Y G L+ ++ MN+ L+++ T+RDG + + + YI
Sbjct: 10 IPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDG-RVSHLDQVYI 68
Query: 62 RGSTIKYLRIPD 73
RGS +K+ +PD
Sbjct: 69 RGSHVKFFIVPD 80
>UniRef50_Q8SSB9 Cluster: U6 snRNA ASSOCIATED SM-LIKE PROTEIN;
n=1; Encephalitozoon cuniculi|Rep: U6 snRNA ASSOCIATED
SM-LIKE PROTEIN - Encephalitozoon cuniculi
Length = 88
Score = 60.5 bits (140), Expect = 1e-08
Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
M PL+LLR ++N + +ELKN + G L CD MN++L+ V DG + + ECY
Sbjct: 1 MYPLTLLRISRNRIVELELKNNDQLRGLLHKCDMAMNLHLKSVTIQKEDGSSIF-INECY 59
Query: 61 IRGSTIKYLRIPDEVIDMVKEE 82
++G++I+ +++ +++ +EE
Sbjct: 60 LKGTSIRLVKLESKILLEQREE 81
>UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_266,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 363
Score = 59.7 bits (138), Expect = 2e-08
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+PL ++ A +H + VELK GE + G++ ++ MN+ L EV +RDG + + + Y+
Sbjct: 5 VPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDG-RPMSLEQVYL 63
Query: 62 RGSTIKYLRIPD 73
RGS I+++ IPD
Sbjct: 64 RGSQIRFVVIPD 75
>UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145,
whole genome shotgun sequence; n=5; Eukaryota|Rep:
Chromosome undetermined scaffold_145, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 122
Score = 59.7 bits (138), Expect = 2e-08
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+PL ++ A +H + VELK GE + G++ ++ MN+ L EV +RDG + + + Y+
Sbjct: 5 VPLKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDG-RPMSLEQVYL 63
Query: 62 RGSTIKYLRIPD 73
RGS I+++ IPD
Sbjct: 64 RGSQIRFVVIPD 75
>UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM domain;
n=5; Apicomplexa|Rep: Small nucealr riboprotein SMD3, SM
domain - Cryptosporidium parvum Iowa II
Length = 143
Score = 58.8 bits (136), Expect = 4e-08
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+PL LL H + +ELK+G+ Y G L ++ MN L V T RDG K + +CY+
Sbjct: 27 IPLKLLYEGLGHIVTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDG-KPVSLEQCYL 85
Query: 62 RGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRG 98
RGS I++ +PD + + + A+ R V G
Sbjct: 86 RGSQIRFCILPDMLKNAPMFKLAANAKNRASVLGAAG 122
>UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=40; Fungi/Metazoa group|Rep: Small nuclear
ribonucleoprotein Sm D3 - Homo sapiens (Human)
Length = 126
Score = 58.8 bits (136), Expect = 4e-08
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P+ +L A+ H + E GE Y G L+ ++ MN + + T RDG + ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGSTIKYLRIPDEVIDMVKEETQVKA-RGRNEVS-KGRGQ 99
RGS I++L +P DM+K +K+ + +N+ S GRG+
Sbjct: 64 RGSKIRFLILP----DMLKNAPMLKSMKNKNQGSGAGRGK 99
>UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:
F5M15.9 - Arabidopsis thaliana (Mouse-ear cress)
Length = 207
Score = 56.4 bits (130), Expect = 2e-07
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
+P+ LL A H + VELK+GE Y G ++ C DNW N L ++ T++DG K ++ +
Sbjct: 7 IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNW-NCQLEDITYTAKDG-KVSQLEHVF 64
Query: 61 IRGSTIK 67
IRGS ++
Sbjct: 65 IRGSKVR 71
>UniRef50_Q1E7Q6 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 178
Score = 54.4 bits (125), Expect = 8e-07
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG-DKFWRMPEC 59
ML S +T NH +++ELKN G L S D ++NI L ++ D +
Sbjct: 81 MLFFSFFKTLTNHTVIIELKNDIRIRGILKSVDQYLNIKLDDIEVIDLDKYPHLSSVKNI 140
Query: 60 YIRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGR 97
+IRGS ++Y+ +P E +D E + ++ +K R
Sbjct: 141 FIRGSVVRYIVLPQEAVDRGLLEDATRREAASQANKAR 178
>UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=3; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D3 - Caenorhabditis elegans
Length = 136
Score = 54.4 bits (125), Expect = 8e-07
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P+ +L A+ H + +E GE Y G L ++ MN L E + T RDG + ++ +I
Sbjct: 6 VPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDG-RSHQLDNVFI 64
Query: 62 RGSTIKYLRIPDEVIDMVKEETQVKARGR 90
RG+ I+++ +P DM+K K GR
Sbjct: 65 RGNKIRFMILP----DMLKNAPMFKNIGR 89
>UniRef50_Q6BXY3 Cluster: Similar to sp|Q02260 Saccharomyces
cerevisiae YGR074w SMD1 snRNA- associated protein; n=4;
Saccharomycetales|Rep: Similar to sp|Q02260
Saccharomyces cerevisiae YGR074w SMD1 snRNA- associated
protein - Debaryomyces hansenii (Yeast) (Torulaspora
hansenii)
Length = 131
Score = 53.6 bits (123), Expect = 1e-06
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L A N P+ VELKNG + NG ++SC MN++++ + + D + IRG+ I
Sbjct: 10 LPNATNQPITVELKNGNSINGQILSCSPLMNLSMKNIKLSQPHQDP-QLLQFINIRGNQI 68
Query: 67 KYLRIPDEV-IDMVKEETQVKARG 89
+ + +PDE+ +D V + VK +G
Sbjct: 69 RQILLPDELNVDNVLARSVVKIKG 92
>UniRef50_UPI0000499249 Cluster: U6 snRNA-associated Sm-like
protein LSm4; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
U6 snRNA-associated Sm-like protein LSm4 - Entamoeba
histolytica HM-1:IMSS
Length = 81
Score = 53.2 bits (122), Expect = 2e-06
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
+LP++LL +Q + +ELKNG Y G L CD MNI+L+ I GD+F + +
Sbjct: 2 VLPINLLENSQGTSVTLELKNGFKYTGILDRCDRMMNIHLKNAILIKPSGDRF-SVSKLI 60
Query: 61 IRGSTIKYLRIPDEVI 76
++G +I+ + + ++
Sbjct: 61 VKGISIRCFSVDESLL 76
>UniRef50_UPI0000498C5A Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 111
Score = 53.2 bits (122), Expect = 2e-06
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
PL + ++ + +E+K GETY G +V ++ MN LR+V T++DG + R +IR
Sbjct: 6 PLKIFHESKGTIVTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQS-RTEYIFIR 64
Query: 63 GSTIKYLRIPD 73
G+ ++++ +P+
Sbjct: 65 GNQVRFVVLPE 75
>UniRef50_UPI0000E480CE Cluster: PREDICTED: similar to LSM10, U7
small nuclear RNA associated; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to LSM10, U7 small
nuclear RNA associated - Strongylocentrotus purpuratus
Length = 124
Score = 52.4 bits (120), Expect = 3e-06
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 6 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
LLR VEL+N + G++V D +MN+ + +V+ + DG+K M +I+ S
Sbjct: 20 LLRAVVGRITTVELRNECSATGYVVDVDGFMNVTMSKVLFVNMDGEK-THMDSIFIQASL 78
Query: 66 IKYLRIPDEVIDMVK 80
++Y++IPD+ I+MVK
Sbjct: 79 VRYVQIPDD-INMVK 92
>UniRef50_UPI0000499737 Cluster: U6 snRNA-associated Sm-like
protein LSm2; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
U6 snRNA-associated Sm-like protein LSm2 - Entamoeba
histolytica HM-1:IMSS
Length = 96
Score = 52.4 bits (120), Expect = 3e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
ML S +T ++VELKN G L++ D +NI L + C + + M +C+
Sbjct: 1 MLFYSFFKTLIGKEVVVELKNDVIITGTLIAVDQMLNIKLNNLKCDATLFPQIQTMTDCF 60
Query: 61 IRGSTIKYLRIPDEVIDM 78
IRG+TI+Y+ + + ID+
Sbjct: 61 IRGNTIRYVSMAENNIDV 78
>UniRef50_A6S4U0 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 157
Score = 52.0 bits (119), Expect = 4e-06
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
ML S +T +H + VELKN G L S D ++NI L ++ + +
Sbjct: 60 MLFFSFFKTLVDHEVTVELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNV 119
Query: 60 YIRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGR 97
+IRGS ++Y+ +P VID E + + +KG+
Sbjct: 120 FIRGSVVRYVHLPGGVIDTALLEDATRREAAQQATKGK 157
>UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 112
Score = 51.6 bits (118), Expect = 6e-06
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P+ LL A N + + L G++Y G L ++ MN L V+ T +DG + + + Y+
Sbjct: 5 IPIKLLHEATNFVVEIHLNTGDSYRGTLKYVEDNMNCWLTNVVHTQKDGQQI-KFDKTYV 63
Query: 62 RGSTIKYLRIPDEVID--MVKE-ETQVKAR 88
RGS I Y +P+ +++ + K ET+VK +
Sbjct: 64 RGSNILYFDLPEMLLNARLFKTGETEVKKK 93
>UniRef50_Q969L4 Cluster: U7 snRNA-associated Sm-like protein LSm10;
n=20; Euteleostomi|Rep: U7 snRNA-associated Sm-like
protein LSm10 - Homo sapiens (Human)
Length = 123
Score = 51.6 bits (118), Expect = 6e-06
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 6 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
LL+ Q V+L++ +G + + D +MNI L +V T R G + ++ + ++ G
Sbjct: 20 LLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGRN 78
Query: 66 IKYLRIPDEV--IDMVKEETQVKARGRNEVSKGRGQ 99
++Y+ IPD+V ++++ Q+ R RN KG+G+
Sbjct: 79 VRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQGR 114
>UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein
(snrnp),putative; n=1; Eimeria tenella|Rep: small
nuclear ribonucleoprotein (snrnp),putative - Eimeria
tenella
Length = 125
Score = 50.0 bits (114), Expect = 2e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P+ LL H + VE K G Y G L + ++ MN+ ++ V T +DG K + + YI
Sbjct: 9 IPVKLLHEGLGHTITVETKTGSLYRGTLENAEDNMNMLIQGVTVTHKDG-KVLSLEQVYI 67
Query: 62 RGSTIKYLRIPD 73
RGS ++ + PD
Sbjct: 68 RGSQVQMVIFPD 79
>UniRef50_A1C7L1 Cluster: Small nuclear ribonucleoprotein (LSM2),
putative; n=5; Fungi/Metazoa group|Rep: Small nuclear
ribonucleoprotein (LSM2), putative - Aspergillus
clavatus
Length = 98
Score = 50.0 bits (114), Expect = 2e-05
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG-DKFWRMPEC 59
ML S +T N + +ELKN G L S D ++NI L +V D +
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 60 YIRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGR 97
+IRGS ++Y+ +P +D+ E + N+ K R
Sbjct: 61 FIRGSVVRYVMLPRSEVDVGLLEDATRREAANQAGKAR 98
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 50.0 bits (114), Expect = 2e-05
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTS-RDG--DKFWRMPEC 59
PL L+TA N +LV+LKNGE Y G L D MN+ L++ CT R+G D +
Sbjct: 8 PLKSLKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKD--CTEYREGTSDPVAKYGRV 65
Query: 60 YIRGSTIKYLRIPDEVIDMVKEE 82
IRGS I ++ I E I M KE+
Sbjct: 66 LIRGSNILFISIDYESI-MGKEK 87
>UniRef50_A7SC68 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 114
Score = 49.2 bits (112), Expect = 3e-05
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 6 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
L++ Q + VEL+N G + D +MNI +++V G+ +P ++ G+
Sbjct: 16 LIKAVQGYNTTVELRNESYLEGFIEHVDGFMNIKMKDVKFVKASGE-VDNLPAMFVVGTQ 74
Query: 66 IKYLRIPDEVIDMVK--EETQVKARGRNEVSKGR 97
I+Y+ IPDE IDM K E+ K +G V + R
Sbjct: 75 IRYVHIPDE-IDMRKAIEQELGKIQGTRTVKRER 107
>UniRef50_A5DAN5 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 195
Score = 48.4 bits (110), Expect = 5e-05
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG-DKFWRMPEC 59
ML S +T + + VELKN G L + D ++N+ L VIC + D +
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIRGTLKTVDQYLNLKLDNVICLNEDKYPHMQSVKNL 60
Query: 60 YIRGSTIKYLRIPDEVID 77
+IRGST++Y+ + +D
Sbjct: 61 FIRGSTVRYVHMSSNTVD 78
>UniRef50_A4RMI1 Cluster: Putative uncharacterized protein; n=3;
Fungi/Metazoa group|Rep: Putative uncharacterized
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 125
Score = 48.4 bits (110), Expect = 5e-05
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L N + +ELKNG +G + S MN LR V T R D + IRGSTI
Sbjct: 7 LMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPI-PLDAMNIRGSTI 65
Query: 67 KYLRIPDEV-ID--MVKEETQVKARGRNEVSKG 96
+Y +PD + +D +V + + K + R E +G
Sbjct: 66 RYYILPDSLPLDTLLVDDTPKPKNKARKETDRG 98
>UniRef50_Q9Y333 Cluster: U6 snRNA-associated Sm-like protein
LSm2; n=31; Eukaryota|Rep: U6 snRNA-associated Sm-like
protein LSm2 - Homo sapiens (Human)
Length = 95
Score = 48.4 bits (110), Expect = 5e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEVID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>UniRef50_Q10013 Cluster: Probable small nuclear ribonucleoprotein
Sm D1; n=10; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein Sm D1 - Caenorhabditis elegans
Length = 126
Score = 48.0 bits (109), Expect = 7e-05
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 17 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEV- 75
+ELKNG +G ++ D MN +LR V T ++ + ++ IRG+ I+Y+ +PD +
Sbjct: 17 IELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPV-KLDTLSIRGNNIRYIILPDPLA 75
Query: 76 ID--MVKEETQVKAR-GRNEVSKGRGQ 99
+D ++ +E + KAR R S+GRG+
Sbjct: 76 LDTLLIDDEPRKKARAARAGASRGRGR 102
>UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein,
putative; n=6; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 113
Score = 47.6 bits (108), Expect = 9e-05
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P+ +L A + + +E+ GE Y+G + N MN+ L++ T+R G K +M ++
Sbjct: 5 IPIKVLFDALHLKVSIEVATGEVYHGTVEELQNNMNVLLKDATKTAR-GGKETKMDSVFV 63
Query: 62 RGSTIKYLRIPD 73
RGS I + ++PD
Sbjct: 64 RGSNIVFFQLPD 75
>UniRef50_Q9ES84 Cluster: SnRNP core protein SMX5d; n=12;
Eukaryota|Rep: SnRNP core protein SMX5d - Mus musculus
(Mouse)
Length = 119
Score = 46.8 bits (106), Expect = 2e-04
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 5 SLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---PECYI 61
S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M C+I
Sbjct: 29 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVKNCFI 86
Query: 62 RGSTIKYLRIPDEVID 77
RGS ++Y+++P + +D
Sbjct: 87 RGSVVRYVQLPADEVD 102
>UniRef50_Q8SW39 Cluster: Similarity to SMALL NUCLEAR
RIBONUCLEOPROTEIN D3; n=1; Encephalitozoon
cuniculi|Rep: Similarity to SMALL NUCLEAR
RIBONUCLEOPROTEIN D3 - Encephalitozoon cuniculi
Length = 87
Score = 46.8 bits (106), Expect = 2e-04
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+PL LL +Q + VE +G+ Y G + D++MN+ L +V+ TS + E I
Sbjct: 5 VPLKLLHESQGFIVTVETSSGDMYRGRVREVDDYMNLVLDDVVVTSNNSS--LSRKEVLI 62
Query: 62 RGSTIKYLRIP 72
RGS+I++ +P
Sbjct: 63 RGSSIRFFVLP 73
>UniRef50_Q8SS46 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN F; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN F - Encephalitozoon cuniculi
Length = 81
Score = 46.4 bits (105), Expect = 2e-04
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L+ +N + V LK G+ Y G LV+ DN+ NI L E CT R+G+ ++ E IR
Sbjct: 14 PKQFLQRMKNRSVRVALKWGQVYEGTLVASDNYFNILLDE--CTEREGEASVKIGEVSIR 71
Query: 63 GSTIK 67
+ IK
Sbjct: 72 CNNIK 76
>UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear
ribonucleoprotein; n=2; Thermoprotei|Rep: 90aa long
hypothetical small nuclear ribonucleoprotein -
Sulfolobus tokodaii
Length = 90
Score = 46.0 bits (104), Expect = 3e-04
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG--DKFWRMPECY 60
PL L+TA N +LV+LK+G Y G L D MN+ LR+ I T R+G + +
Sbjct: 13 PLKSLKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIET-REGTAEPVAKYGRVL 71
Query: 61 IRGSTIKYLRIPDEVI 76
IRGS I ++ + E +
Sbjct: 72 IRGSNILFISVDYEAL 87
>UniRef50_P38203 Cluster: U6 snRNA-associated Sm-like protein
LSm2; n=28; Fungi/Metazoa group|Rep: U6
snRNA-associated Sm-like protein LSm2 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 95
Score = 45.6 bits (103), Expect = 4e-04
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICT-SRDGDKFWRMPEC 59
ML S +T + ++VELKN G L S D ++N+ L + CT + +
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60
Query: 60 YIRGSTIKYLRIPDEVID 77
+IRGST++Y+ + ++D
Sbjct: 61 FIRGSTVRYVYLNKNMVD 78
>UniRef50_A2DK14 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 119
Score = 45.2 bits (102), Expect = 5e-04
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 4 LSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
+++L A + +E K GE Y G L ++ MN+ L +V T+ G + + YIRG
Sbjct: 12 IAILHEADGFVVTIETKQGEMYRGTLFGSEDTMNVELHDVTYTNSKGVDSHK-DKVYIRG 70
Query: 64 STIKYLRIPDEVID--MVKEETQVK 86
S I + +PD + M +E +VK
Sbjct: 71 SNIVFFVLPDMFANAPMFIDEKKVK 95
>UniRef50_P62314 Cluster: Small nuclear ribonucleoprotein Sm D1;
n=37; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D1 - Homo sapiens (Human)
Length = 119
Score = 45.2 bits (102), Expect = 5e-04
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L + + +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 67 KYLRIPDEV-ID--MVKEETQVKARGRNEVS-KGRGQ 99
+Y +PD + +D +V E +VK++ R V+ +GRG+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>UniRef50_Q3LW05 Cluster: Spliceosomal snRNA-associated Sm core
protein required for pre-mRNA splicing; n=1;
Bigelowiella natans|Rep: Spliceosomal snRNA-associated
Sm core protein required for pre-mRNA splicing -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 141
Score = 44.4 bits (100), Expect = 9e-04
Identities = 25/73 (34%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLV-SCDNWMNINLREVICTSRDGDKFWRMPECY 60
+PL L+ A+ H + V+LK+G+ G L+ S DNW N+ L++VI ++ +K + +
Sbjct: 10 IPLKLIHQAEKHQISVKLKDGKLLIGELMNSEDNW-NLCLKKVIIKEKE-NKSSKSMLYF 67
Query: 61 IRGSTIKYLRIPD 73
+RG+ I ++ IP+
Sbjct: 68 VRGNQITFIIIPE 80
>UniRef50_Q16J66 Cluster: Putative uncharacterized protein; n=2;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 141
Score = 43.2 bits (97), Expect = 0.002
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 6 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
L++ N +L++L+N + G + + D +MNI++ V+ + G K +RM E I
Sbjct: 20 LVQCLVNRNILIDLRNESSVAGKITNVDGFMNISMENVVLIDQLG-KHFRMEEFMIYPRY 78
Query: 66 IKYLRIPDEVIDMVKEETQVK 86
++Y+ IP+ + + E +K
Sbjct: 79 VRYIHIPESIEIVPALEEHIK 99
>UniRef50_A4HNB4 Cluster: Sm-f snRNP core complex protein,
putative; n=5; Trypanosomatidae|Rep: Sm-f snRNP core
complex protein, putative - Leishmania braziliensis
Length = 77
Score = 42.7 bits (96), Expect = 0.003
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P + L + +LV+ K G Y G+LVSCD +MN+ LR+ + ++ + + E +
Sbjct: 5 VPGAFLHSLVGKKVLVKSKWGPVYEGNLVSCDTFMNLQLRDAVEHAKQDTE---LGEMLL 61
Query: 62 RGSTIKYLR 70
R + I Y+R
Sbjct: 62 RNNNILYIR 70
>UniRef50_A2FH88 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 94
Score = 42.7 bits (96), Expect = 0.003
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG-DKFWRMPEC 59
ML L + RT Q + V +KNG G L S D++ NI L + +
Sbjct: 1 MLFLHVFRTLQGKRITVHVKNGIVIEGTLQSIDHFYNIKLINTETKDAGNLNMVSTLSTA 60
Query: 60 YIRGSTIKYLRIPDEVIDM 78
YIRG+++ Y+ +P + ID+
Sbjct: 61 YIRGTSVLYIELPKDEIDL 79
>UniRef50_A0CX56 Cluster: Chromosome undetermined scaffold_3,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_3,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 100
Score = 42.7 bits (96), Expect = 0.003
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 17 VELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPECYIRGSTIKYLRIPDEV 75
+ELKNG G + D+ +N NL + + + + +IRGST+KY+ IP E
Sbjct: 22 IELKNGLQIQGQITYVDDNLNFNLVDPEVSDPLKQPQLMTLRNSFIRGSTVKYVHIPQEE 81
Query: 76 IDMVKEETQVKARGRNEVSK 95
+ +EE + A +NEV K
Sbjct: 82 L---QEEVLISA-CKNEVKK 97
>UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F,
putative, expressed; n=5; Oryza sativa|Rep: Small
nuclear ribonucleoprotein F, putative, expressed -
Oryza sativa subsp. japonica (Rice)
Length = 86
Score = 41.9 bits (94), Expect = 0.005
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L P++V+LK G Y G+LVS D++MN+ L DG + E IR
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTE-EYIDGQFSGNLGEILIR 66
Query: 63 GSTIKYLR-IPDE 74
+ + YLR +P++
Sbjct: 67 CNNVLYLRGVPED 79
>UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 91
Score = 41.9 bits (94), Expect = 0.005
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
PL L++A N +LV++K+G Y G L D+ MN+ L DG R + IR
Sbjct: 11 PLKYLKSAVNQIVLVKIKDGHEYIGTLNMVDHTMNVVLSNCQEYGDDGKPIARYGKVLIR 70
Query: 63 GSTIKYLRI 71
GS I ++ I
Sbjct: 71 GSHIVFISI 79
>UniRef50_UPI00015BACE3 Cluster: Like-Sm ribonucleoprotein, core;
n=1; Ignicoccus hospitalis KIN4/I|Rep: Like-Sm
ribonucleoprotein, core - Ignicoccus hospitalis KIN4/I
Length = 91
Score = 41.5 bits (93), Expect = 0.006
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRD-GDKFWRMPECYI 61
PL LR A ++ +LV LK+G Y G LV DN MN+ L + S + G+ + I
Sbjct: 15 PLKYLRAAVDNVVLVRLKDGNEYVGKLVFTDNTMNLILDDCTELSPETGEPVAKYGRIMI 74
Query: 62 RGSTIKYLRI 71
RGS + ++ +
Sbjct: 75 RGSYVLFISL 84
>UniRef50_Q9AW42 Cluster: Putative small nuclear ribonucleoprotein
Sm D3; n=1; Guillardia theta|Rep: Putative small
nuclear ribonucleoprotein Sm D3 - Guillardia theta
(Cryptomonas phi)
Length = 79
Score = 41.5 bits (93), Expect = 0.006
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 5 SLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGS 64
S+LR ++ + + +E KNG Y G L+ + MN L+E + K ++ ++RGS
Sbjct: 8 SILRESKPYVITIECKNGFIYRGKLIHIEENMNCILKEAFVIKK--KKVQKLTLVFLRGS 65
Query: 65 TIKYLRIPDEVI 76
I IPD +I
Sbjct: 66 NISMFIIPDILI 77
>UniRef50_Q9VU02 Cluster: Probable small nuclear ribonucleoprotein
Sm D1; n=20; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein Sm D1 - Drosophila melanogaster (Fruit
fly)
Length = 124
Score = 41.5 bits (93), Expect = 0.006
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L + + +ELKNG +G + D MN +L+ V T ++ D + IRG+ I
Sbjct: 7 LMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPV-HLETLSIRGNNI 65
Query: 67 KYLRIPDE-------VIDMVKEETQVKARGR-NEVSKGRG 98
+Y +PD + D K +T+ K GR +GRG
Sbjct: 66 RYFILPDSLPLETLLIDDTPKSKTKKKDSGRVGNRGRGRG 105
>UniRef50_A2E4T4 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 111
Score = 41.1 bits (92), Expect = 0.008
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
LR + VELK+ G +V D+ MN +LR ++ G + R+ IRG++I
Sbjct: 7 LRKLVRETVTVELKDNTVIKGTVVGVDSAMNTHLR-LVHIKAPGQEEKRLENLTIRGASI 65
Query: 67 KYLRIPDEV-ID-MVKEETQVKARGRNEVSK 95
+Y+ +PD + +D ++ +++ K R R+ +K
Sbjct: 66 RYVILPDVLNLDTLLVDDSPTKTRMRHGEAK 96
>UniRef50_Q4N728 Cluster: U6 small nuclear ribonucleoprotein,
putative; n=3; Aconoidasida|Rep: U6 small nuclear
ribonucleoprotein, putative - Theileria parva
Length = 77
Score = 40.7 bits (91), Expect = 0.011
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P + + + P+LV+L NG + G L S D MN+ + E C DG + +IR
Sbjct: 6 PSAYITSITRKPVLVKLNNGSDFKGTLASLDERMNLAM-ENTCEFLDGVMVKSYGDAFIR 64
Query: 63 GSTIKYL 69
G+ + Y+
Sbjct: 65 GNNVYYI 71
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 40.7 bits (91), Expect = 0.011
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
M P LR + ++VELK G+T G LVS D +N+ L + C D D R+
Sbjct: 1 MRPHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDD--CVEIDEDSEVRLGRVL 58
Query: 61 IRGSTIKYLRIPDEV 75
IRG ++ + P EV
Sbjct: 59 IRGDSVTLIS-PAEV 72
>UniRef50_Q98RL6 Cluster: Small nuclear ribonucleoprotein D-like
protein; n=1; Guillardia theta|Rep: Small nuclear
ribonucleoprotein D-like protein - Guillardia theta
(Cryptomonas phi)
Length = 60
Score = 40.3 bits (90), Expect = 0.014
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 17 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLR 70
+EL+NG + NG + D + N+ L VI T+ G+ F + +I+G IK +R
Sbjct: 5 IELENGYSCNGSIKKIDKFKNLTLSNVIITNLRGNLFKSYSKLFIKGRMIKMVR 58
>UniRef50_Q5CRM6 Cluster: Small nuclear ribonucleoprotein D1. SM
domain containing protein; n=2; Cryptosporidium|Rep:
Small nuclear ribonucleoprotein D1. SM domain
containing protein - Cryptosporidium parvum Iowa II
Length = 137
Score = 40.3 bits (90), Expect = 0.014
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 12 NHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRI 71
N+ +++ELKNG G +V+ D MN L+ V + + + + + +RG+TI+Y +
Sbjct: 23 NNSVVIELKNGTIIQGTIVTVDMSMNTYLKNVKMSVKHRNPV-SLSQITVRGNTIRYFIL 81
Query: 72 PDEV 75
PD +
Sbjct: 82 PDSL 85
>UniRef50_Q4YPG0 Cluster: U6 snRNA-associated sm-like protein Lsm2,
putative; n=5; Plasmodium (Vinckeia)|Rep: U6
snRNA-associated sm-like protein Lsm2, putative -
Plasmodium berghei
Length = 125
Score = 40.3 bits (90), Expect = 0.014
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 11 QNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG-DKFWRMPECYIRGSTIKYL 69
+N + +ELKN +G L S D ++NI L + + + + C++RGS ++Y+
Sbjct: 34 KNQHITIELKNDLQISGVLHSVDQYLNIKLTNISVNNPEKYPHLLSIKTCFVRGSVVRYV 93
Query: 70 RIPDEVIDMVK 80
+P +++ K
Sbjct: 94 FLPSNEVNIEK 104
>UniRef50_Q22R48 Cluster: U6 snRNA-associated Sm-like protein
LSm4; n=1; Tetrahymena thermophila SB210|Rep: U6
snRNA-associated Sm-like protein LSm4 - Tetrahymena
thermophila SB210
Length = 95
Score = 40.3 bits (90), Expect = 0.014
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 16 LVELKNGETYNGHLVSCDNWMNINLREVICTSRD 49
+VELK+G+TY G L D +MNI L EV TS+D
Sbjct: 1 MVELKSGDTYIGVLEDVDRFMNIQLTEVTFTSKD 34
>UniRef50_A4VD81 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 171
Score = 40.3 bits (90), Expect = 0.014
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 11 QNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLR 70
+N + VELKN G + D MN NL ++ ++ + C+IRGS+++Y+
Sbjct: 90 KNAVITVELKNDVKIKGKITYVDGNMNFNLVDI--QDQETVQLANFKNCFIRGSSVRYVH 147
Query: 71 IPDEVIDM 78
+ E ID+
Sbjct: 148 LEKEDIDV 155
>UniRef50_Q5CYT7 Cluster: SnRNP core protein; n=1; Cryptosporidium
parvum Iowa II|Rep: SnRNP core protein -
Cryptosporidium parvum Iowa II
Length = 107
Score = 39.9 bits (89), Expect = 0.018
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 17 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGD-KFWRMPECYIRGSTIKYLRIPDEV 75
VELKN G L S D ++NI L + + C+IRGS ++Y+ P
Sbjct: 23 VELKNDLQITGTLHSIDQYLNIKLNNTTVNQNESFIHLGSLKNCFIRGSVVRYIFFPPSE 82
Query: 76 IDM 78
+D+
Sbjct: 83 VDI 85
>UniRef50_Q9SY09 Cluster: Small nuclear riboprotein Sm-D1; n=9;
Eukaryota|Rep: Small nuclear riboprotein Sm-D1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 116
Score = 38.7 bits (86), Expect = 0.043
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L N + +ELKNG +G + D MN +L+ V T + G + +RG+ I
Sbjct: 7 LMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNI 65
Query: 67 KYLRIPDEV---IDMVKEETQVKAR----GRNEVSKGRGQ 99
+Y +PD + +V++ ++K + G+ +GRG+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGR 105
>UniRef50_Q8SSM1 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 99
Score = 38.7 bits (86), Expect = 0.043
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 6 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
+LR +N + +E K G G +VS D MN+ + +V+ + +RGS+
Sbjct: 6 VLRKCKNERVKIETKEGRRIEGKIVSVDKTMNVEMVDVVVDGAPASTY------TVRGSS 59
Query: 66 IKYLRIPDEVID----MVKEETQVKARGRNEVSKGR 97
I+Y+ D+ ID +V + + +ARG+ E K +
Sbjct: 60 IRYVLFRDD-IDFKPLLVDDRPRNRARGQ-ETGKAK 93
>UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Thermofilum pendens Hrk 5|Rep: Like-Sm
ribonucleoprotein, core - Thermofilum pendens (strain
Hrk 5)
Length = 100
Score = 38.7 bits (86), Expect = 0.043
Identities = 22/92 (23%), Positives = 42/92 (45%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
M P+ LR + V+LK+G Y G L D MN+ L + + ++ +
Sbjct: 1 MQPIEHLRNQSGKGVFVKLKDGSEYMGKLRMTDAAMNLVLDDAKELTETNKVVAQLGTVF 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNE 92
IRGS + ++ + E + + + + + + R E
Sbjct: 61 IRGSNLLFVSLEPEKVTFFEPQQEQRGQAREE 92
>UniRef50_UPI00015533A8 Cluster: PREDICTED: similar to Snrpf
protein; n=1; Mus musculus|Rep: PREDICTED: similar to
Snrpf protein - Mus musculus
Length = 209
Score = 38.3 bits (85), Expect = 0.056
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 130 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 188
Query: 63 GSTIKYLRIPDE 74
+ + Y+R +E
Sbjct: 189 CNNVLYIRGVEE 200
>UniRef50_UPI0000499412 Cluster: U6 snRNA-associated Sm-like
protein; n=1; Entamoeba histolytica HM-1:IMSS|Rep: U6
snRNA-associated Sm-like protein - Entamoeba
histolytica HM-1:IMSS
Length = 71
Score = 38.3 bits (85), Expect = 0.056
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P+ + A H ++L +G + G + D MNI L I +G+K PEC+IR
Sbjct: 9 PIQFFKEALFHECSIKLNDGTIFKGKMTLIDGLMNIVLENAI-EYINGNKDNEYPECFIR 67
Query: 63 GS 64
G+
Sbjct: 68 GN 69
>UniRef50_P62306 Cluster: Small nuclear ribonucleoprotein F; n=20;
Euteleostomi|Rep: Small nuclear ribonucleoprotein F -
Homo sapiens (Human)
Length = 86
Score = 38.3 bits (85), Expect = 0.056
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 63 GSTIKYLRIPDE 74
+ + Y+R +E
Sbjct: 66 CNNVLYIRGVEE 77
>UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;
Fungi/Metazoa group|Rep: Small nuclear
ribonucleoprotein F - Drosophila melanogaster (Fruit
fly)
Length = 88
Score = 38.3 bits (85), Expect = 0.056
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNI---NLREVICTSRDGDKFWRMPEC 59
P L P+LV+LK G+ Y G LVS D +MN+ N EVI +G + E
Sbjct: 9 PKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVI----EGSVTGNLGEV 64
Query: 60 YIRGSTIKYLR 70
IR + + Y++
Sbjct: 65 LIRCNNVLYIK 75
>UniRef50_Q0UDD7 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 80
Score = 37.9 bits (84), Expect = 0.075
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 36 MNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPD 73
MN+ L+++ T+RDG + + + YIRGS ++Y +PD
Sbjct: 1 MNVQLKDITVTARDG-RVSHLEQVYIRGSHVRYFIVPD 37
>UniRef50_Q7QST9 Cluster: GLP_127_22232_21855; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_127_22232_21855 - Giardia lamblia
ATCC 50803
Length = 125
Score = 37.5 bits (83), Expect = 0.099
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 6 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
+L N+ M++ LK+ T G L + D MN+ L +V + K P ++GS
Sbjct: 14 VLPNCVNYYMVIALKDSTTIQGVLRNVDVQMNMVLSDVTMIDTES-KSSHYPTYSLQGSL 72
Query: 66 IKYLRIPDEVIDMVKEETQVKARGRNEVSKGRG 98
I +RIPD I ++ + V+ +G
Sbjct: 73 ISSIRIPDRAIKEAASIAASQSMNSSSVTNSQG 105
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 37.1 bits (82), Expect = 0.13
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKF-WRMPECYI 61
P L+ N + V+LK+G Y G LV+ D MN+ L + I + +G + ++ I
Sbjct: 12 PFKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVADNGTRLVAKIGRVLI 71
Query: 62 RGSTIKYL 69
+GS ++++
Sbjct: 72 KGSMVEFI 79
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 37.1 bits (82), Expect = 0.13
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
PL L + N P++++LK + G L S D MN+ L + DG+ R+ IR
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAE-ELEDGEVTRRLGTVLIR 72
Query: 63 GSTIKYL 69
G I Y+
Sbjct: 73 GDNIVYI 79
>UniRef50_Q4QBP1 Cluster: Small nuclear ribonucleoprotein,
putative; n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 103
Score = 36.7 bits (81), Expect = 0.17
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 17 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEV- 75
+ELKN +G + D MN + TS+ G + E +RGSTI+Y+ +P+ +
Sbjct: 27 IELKNASIVSGEIAYVDANMNTYMSHAKITSK-GKNPVEVEEYMVRGSTIRYIIMPESLN 85
Query: 76 -IDMVKEETQVK 86
D++K+ + K
Sbjct: 86 TYDILKQASTKK 97
>UniRef50_Q6BPY4 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome E of strain CBS767 of Debaryomyces hansenii
- Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 101
Score = 36.3 bits (80), Expect = 0.23
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 3 PLSLLRTAQNHPMLVELKNGET-YNGHLVSCDNWMNINLREVI-CTSRDGDKFWR-MPEC 59
P L+T ++V LK +T Y G L+S DN+MN+ L + DG+K + E
Sbjct: 9 PKPFLKTLIGKQVIVRLKWNKTEYKGTLISIDNYMNLQLDKTSEVIYEDGEKKEEVIGEI 68
Query: 60 YIRGSTIKYLRIPDEV 75
+IR + + ++R EV
Sbjct: 69 FIRCNNVLFIREDKEV 84
>UniRef50_P54999 Cluster: Small nuclear ribonucleoprotein F; n=11;
Eukaryota|Rep: Small nuclear ribonucleoprotein F -
Saccharomyces cerevisiae (Baker's yeast)
Length = 86
Score = 36.3 bits (80), Expect = 0.23
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 3 PLSLLRTAQNHPMLVELK-NGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
P L+ NH + V+LK N Y G LVS DN+ N+ L E G + E +I
Sbjct: 15 PKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAE-EFVAGVSHGTLGEIFI 73
Query: 62 RGSTIKYLR 70
R + + Y+R
Sbjct: 74 RCNNVLYIR 82
>UniRef50_Q38339 Cluster: Putative single stranded DNA binding
protein; n=2; root|Rep: Putative single stranded DNA
binding protein - Lactococcus phage BK5-T
Length = 173
Score = 35.5 bits (78), Expect = 0.40
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 17 VELKNGETYNGHLVSCDNWMNINLREVICTSRD-GDKFWRMPECYIRGSTIKYLRIPDEV 75
+E NGE+ N +LV D W ++NL+ ++ + D G + + Y R T+++L
Sbjct: 44 IEGMNGESTNSYLVFGDQWSDLNLQRILASIEDNGQQIAPIDYGYNR-ETVQFLTNHKVF 102
Query: 76 IDMVKEE-TQVKARGRNEVSKG 96
I M + T V G+ + S G
Sbjct: 103 IQMKERTGTYVDKNGKTQNSTG 124
>UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog;
n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
homolog - Pyrobaculum aerophilum
Length = 85
Score = 35.5 bits (78), Expect = 0.40
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P+ +L N ++ LK G G L + D MN+ L + + G+ R IR
Sbjct: 12 PIKVLTKMLNKEIIARLKGGVAVKGVLTAYDGCMNLVLNDAAELDKSGEPKTRYGRIVIR 71
Query: 63 GSTIKYL 69
GS + Y+
Sbjct: 72 GSQVIYV 78
>UniRef50_Q7QTN4 Cluster: GLP_0_18571_18248; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_0_18571_18248 - Giardia lamblia
ATCC 50803
Length = 107
Score = 35.1 bits (77), Expect = 0.53
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMP--- 57
ML L+ L + VELK+G +G L++ DN+ N++L + D F +
Sbjct: 1 MLYLTFLSKLVGRKVYVELKSGMQMHGVLLASDNFANLSLDNPVIYGSD-ISFTHVSGGR 59
Query: 58 ECYIRGSTIKYLRIPD 73
+IRGS I++L + D
Sbjct: 60 RVFIRGSAIQFLYLND 75
>UniRef50_UPI0000DB6D99 Cluster: PREDICTED: similar to LSM10, U7
small nuclear RNA associated; n=1; Apis mellifera|Rep:
PREDICTED: similar to LSM10, U7 small nuclear RNA
associated - Apis mellifera
Length = 91
Score = 34.7 bits (76), Expect = 0.70
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 6 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
LL+ +N +++L+N + G + D +MNI +++ I GD + +++
Sbjct: 19 LLKAVENVRTIIDLRNEASVYGIVEHADAYMNIVMKDCIFIDPRGDSY-NYDMFFVQARN 77
Query: 66 IKYLRIPDEV 75
I+++ IP +V
Sbjct: 78 IRFVHIPPKV 87
>UniRef50_Q4S130 Cluster: Chromosome 1 SCAF14770, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 1 SCAF14770, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 135
Score = 34.7 bits (76), Expect = 0.70
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 5 SLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---PECYI 61
S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M +C I
Sbjct: 5 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVRDCII 62
Query: 62 RGSTI 66
RGS +
Sbjct: 63 RGSVV 67
>UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotein
F; n=7; Magnoliophyta|Rep: Probable small nuclear
ribonucleoprotein F - Arabidopsis thaliana (Mouse-ear
cress)
Length = 88
Score = 34.7 bits (76), Expect = 0.70
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L ++V+LK G Y G L S D++MN+ L DG + E IR
Sbjct: 8 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTE-EYIDGQLTGNLGEILIR 66
Query: 63 GSTIKYLR-IPDE 74
+ + Y+R +P++
Sbjct: 67 CNNVLYVRGVPED 79
>UniRef50_Q8MVI2 Cluster: U7 snRNP-specific SM-like protein; n=1;
Boltenia villosa|Rep: U7 snRNP-specific SM-like protein
- Boltenia villosa
Length = 100
Score = 34.3 bits (75), Expect = 0.92
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 17 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEV 75
VE+KN T G L D +MN+ +++ +S +G +++ S +Y+ +P++V
Sbjct: 29 VEMKNDTTITGTLXCVDGFMNMFMKKAKISSCNGTSM-SAERIHVKASNTRYIMLPNDV 86
>UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN;
n=1; Encephalitozoon cuniculi|Rep: U6 snRNA-ASSOCIATED
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 94
Score = 34.3 bits (75), Expect = 0.92
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
ML R++ + V LK G +G L D ++N++L +V I +S G + C
Sbjct: 1 MLFYEFFRSSIGSRVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILSSHPG--LSSISVC 58
Query: 60 YIRGSTIKYLRI 71
IRGS+IKY+ +
Sbjct: 59 SIRGSSIKYILV 70
>UniRef50_A7D237 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: Like-Sm
ribonucleoprotein, core - Halorubrum lacusprofundi ATCC
49239
Length = 80
Score = 34.3 bits (75), Expect = 0.92
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNI 38
PL +L + P+ V LK+G TY G L D MNI
Sbjct: 5 PLDVLEASLEEPVTVHLKDGTTYYGILAGYDQHMNI 40
>UniRef50_A3H8P4 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Caldivirga maquilingensis IC-167|Rep: Like-Sm
ribonucleoprotein, core - Caldivirga maquilingensis
IC-167
Length = 140
Score = 34.3 bits (75), Expect = 0.92
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
+LV L G Y G LV D +NI L +V D+ R P+ I+ I+ + + +E
Sbjct: 22 VLVNLIGGSFYRGQLVGIDQGLNIVLVDV-----TNDRNERFPKVLIKSEAIRDIALVEE 76
Query: 75 VIDM 78
ID+
Sbjct: 77 YIDL 80
>UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein
LSm6; n=22; Eukaryota|Rep: U6 snRNA-associated Sm-like
protein LSm6 - Homo sapiens (Human)
Length = 80
Score = 34.3 bits (75), Expect = 0.92
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L+ P++V+L +G Y G L D +MNI L + +G + + +IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE-EYVNGQLKNKYGDAFIR 66
Query: 63 GSTIKYL 69
G+ + Y+
Sbjct: 67 GNNVLYI 73
>UniRef50_Q98S70 Cluster: Probable small nuclear ribonucleoprotein
D1; n=1; Guillardia theta|Rep: Probable small nuclear
ribonucleoprotein D1 - Guillardia theta (Cryptomonas
phi)
Length = 77
Score = 33.9 bits (74), Expect = 1.2
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 5 SLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGS 64
+ ++ + +++ELKN G +V+ D MN+ + + DG KF++ IR +
Sbjct: 5 NFIKQLKGEEIIIELKNNIIIMGVIVNVDKNMNLKVSNISDIDIDGQKFFK-GNLSIRFN 63
Query: 65 TIKYLRIPDEV 75
I+ + +P ++
Sbjct: 64 NIRIMVLPSKI 74
>UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;
Guillardia theta|Rep: Small nuclear ribonucleoprotein F
- Guillardia theta (Cryptomonas phi)
Length = 73
Score = 33.9 bits (74), Expect = 1.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINL 40
M P ++L N + V+LK G +Y G + DN+MNI L
Sbjct: 1 MNPKNILNNNYNKNVFVKLKWGSSYTGIFIGSDNYMNIIL 40
>UniRef50_Q010Y9 Cluster: Ypt/Rab GTPase activating protein; n=13;
Eukaryota|Rep: Ypt/Rab GTPase activating protein -
Ostreococcus tauri
Length = 836
Score = 33.9 bits (74), Expect = 1.2
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L + V LK G Y G LVS D +MN+ L DG+ + E IR
Sbjct: 764 PKPFLAALTGKRVAVRLKWGMEYRGFLVSTDAYMNLQLASTE-EYIDGELQGALGEVLIR 822
Query: 63 GSTIKYLRIPDE 74
+ + YLR +E
Sbjct: 823 CNNVMYLRGVEE 834
>UniRef50_Q6FQ95 Cluster: Similar to sp|Q02260 Saccharomyces
cerevisiae YGR074w SMD1 snRNA- associated protein; n=1;
Candida glabrata|Rep: Similar to sp|Q02260
Saccharomyces cerevisiae YGR074w SMD1 snRNA- associated
protein - Candida glabrata (Yeast) (Torulopsis
glabrata)
Length = 133
Score = 33.9 bits (74), Expect = 1.2
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 2 LPLSL---LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLRE 42
+PL L LR QN + +EL+NG T G ++S N+NLR+
Sbjct: 1 MPLKLTNFLRKLQNQYVTLELQNGSTVYGMVISVSPHSNVNLRD 44
>UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep:
AGR130Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 80
Score = 33.5 bits (73), Expect = 1.6
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVI 44
+LPL ++ A N P+ V L + + G LV D+++N+ + +V+
Sbjct: 3 VLPLEIIDRAINQPIWVLLTSNREFTGTLVGFDDFVNVVIEDVV 46
>UniRef50_Q74N54 Cluster: NEQ037; n=1; Nanoarchaeum equitans|Rep:
NEQ037 - Nanoarchaeum equitans
Length = 66
Score = 33.5 bits (73), Expect = 1.6
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
M PL L + + + V LKNG+T G L S D +N+ ++EV + + E +
Sbjct: 1 MRPLEFLASLKGKRVKVYLKNGKTIEGLLESSDIHVNLYMKEVKIDEEN------LKELF 54
Query: 61 IRGSTIKYL 69
+RG + ++
Sbjct: 55 VRGDMVLFI 63
>UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2;
Thermoprotei|Rep: Small nuclear ribonucleoprotein -
Cenarchaeum symbiosum
Length = 106
Score = 33.5 bits (73), Expect = 1.6
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
PL+ L+ + + V LKN Y G + + D++MN+ + + D +R
Sbjct: 35 PLTALQKSTKKAVTVRLKNETEYKGKMENVDSYMNLIMTDAE-EFHDSKVVANYGRVIVR 93
Query: 63 GSTIKYLRIPDEV 75
G+ + ++R+ +E+
Sbjct: 94 GNNVLFIRLENEL 106
>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
Archaea|Rep: Putative snRNP Sm-like protein -
Archaeoglobus fulgidus
Length = 77
Score = 33.5 bits (73), Expect = 1.6
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
PL +L + P++V LK G + G L D MN+ L + ++G+ ++ IR
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAE-EIQNGEVVRKVGSVVIR 63
Query: 63 GSTIKYL 69
G T+ ++
Sbjct: 64 GDTVVFV 70
>UniRef50_P10676 Cluster: Neither inactivation nor afterpotential
protein C; n=3; Sophophora|Rep: Neither inactivation nor
afterpotential protein C - Drosophila melanogaster
(Fruit fly)
Length = 1501
Score = 33.5 bits (73), Expect = 1.6
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 5 SLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI-RG 63
SL + A+N PM+VE+ + L+ ++ M ++ E++ SRD ++ PE ++ RG
Sbjct: 262 SLEKNAENRPMMVEMVE-HPFLTELIENEDEMRSDIAEMLELSRDVKTLYKEPELFVDRG 320
Query: 64 STIKYLRIPDEV 75
++ P+++
Sbjct: 321 YVKRFDEKPEKM 332
>UniRef50_Q5DHE3 Cluster: SJCHGC05980 protein; n=2; Schistosoma
japonicum|Rep: SJCHGC05980 protein - Schistosoma
japonicum (Blood fluke)
Length = 207
Score = 33.1 bits (72), Expect = 2.1
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 14 PMLVELKNGETYNGHLVSCDNWMNINLRE-VICTSRDGDK---FWRMPECYIRGSTIKYL 69
P+ V L + G L SCD MNI L VI + + D+ F ++ I G I+Y+
Sbjct: 35 PITVTLLDETRITGRLCSCDGMMNIQLDSGVIIRNPNSDRLNEFIQVETIMIFGQRIRYV 94
Query: 70 RIPDEV 75
+P +
Sbjct: 95 TVPKSI 100
>UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein,
putative; n=3; Piroplasmida|Rep: (U6) snRNA-associated
Sm-like protein, putative - Theileria annulata
Length = 90
Score = 33.1 bits (72), Expect = 2.1
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVI--CTSRDGDKFWRMPEC 59
LPL+L+ + + +KN + G L D++MN+ L +V+ S DG K + +
Sbjct: 11 LPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADGVKTTELNDA 70
Query: 60 YIRGSTIKYL 69
+ G+ + L
Sbjct: 71 LVNGNNVAML 80
>UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein
LSm6; n=2; Pezizomycotina|Rep: U6 snRNA-associated
Sm-like protein LSm6 - Magnaporthe grisea (Rice blast
fungus) (Pyricularia grisea)
Length = 83
Score = 33.1 bits (72), Expect = 2.1
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P S L + + V+L +G Y G L S D +MNI L E G K + ++R
Sbjct: 14 PTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIAL-EKAEEWVAGQKKRSYGDAFVR 72
Query: 63 GSTIKYL 69
G+ + Y+
Sbjct: 73 GNNVMYI 79
>UniRef50_Q7RI57 Cluster: Putative uncharacterized protein PY03773;
n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY03773 - Plasmodium yoelii yoelii
Length = 428
Score = 32.7 bits (71), Expect = 2.8
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 10 AQNHPMLVELKNGETYNGH---LVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
+QN+P LKN T+ GH ++ C ++N + +I +DG K W + CY I
Sbjct: 298 SQNNPYF-NLKNFTTFIGHKNDIIKC--YVNDKNQFMISLGKDGLKIWDIYNCY----PI 350
Query: 67 KYLRIPDEVID 77
K L+ VID
Sbjct: 351 KTLKYGGNVID 361
>UniRef50_Q5V3W7 Cluster: SnRNP-like protein; n=2;
Halobacteriaceae|Rep: SnRNP-like protein - Haloarcula
marismortui (Halobacterium marismortui)
Length = 60
Score = 32.7 bits (71), Expect = 2.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGD 51
PL +L + + V+LK GE + G L D MN+ + + T GD
Sbjct: 5 PLDVLEASLGETVTVQLKGGELFEGELTGYDQHMNLVVEDEDTTIIRGD 53
>UniRef50_Q7RIW4 Cluster: Putative uncharacterized protein
PY03502; n=2; Plasmodium (Vinckeia)|Rep: Putative
uncharacterized protein PY03502 - Plasmodium yoelii
yoelii
Length = 215
Score = 32.3 bits (70), Expect = 3.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG 50
P+ L+ H + VE K+G Y G L+ ++ MN L V +DG
Sbjct: 6 PIKLIHEGIGHTISVETKSGILYRGILLFAEDNMNCLLSNVTVVKQDG 53
>UniRef50_Q38BA6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Trypanosoma brucei|Rep: Small nuclear
ribonucleoprotein, putative - Trypanosoma brucei
Length = 131
Score = 32.3 bits (70), Expect = 3.7
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWM-NINLREVICTSRDGDKFWRMPECY 60
+PL + A + VE +G Y+G L+ D +I L +V C RD +
Sbjct: 7 IPLRAICEATGFLVKVETTDGSVYDGKLMQLDAICGDIELIDVRCQHRDSSLSVE-GRVF 65
Query: 61 IRGSTIKYLRIPDEV-----IDMVKEETQVKARGRNEVSKGRGQN 100
++GS+++ + +P ++ +D Q + + + SKG G+N
Sbjct: 66 LKGSSVRLVHLPSDLKRAPFLDWKNLSIQKQLKSSLKASKG-GEN 109
>UniRef50_A1CE19 Cluster: LSM domain protein; n=3;
Trichocomaceae|Rep: LSM domain protein - Aspergillus
clavatus
Length = 108
Score = 32.3 bits (70), Expect = 3.7
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P + L P+ V+L +G Y G L S D +MNI L E DG + +IR
Sbjct: 11 PSAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIAL-EQSKEFMDGKLRRSYGDAFIR 69
Query: 63 GSTIKY 68
G+ Y
Sbjct: 70 GNNGLY 75
>UniRef50_Q9ZCB1 Cluster: Glycyl-tRNA synthetase beta chain; n=11;
Rickettsia|Rep: Glycyl-tRNA synthetase beta chain -
Rickettsia prowazekii
Length = 665
Score = 32.3 bits (70), Expect = 3.7
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 11 QNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLR 70
+N+ +L LK E L+ N N+N+++ +C + P + K+L
Sbjct: 202 ENNVILERLKREEIIKVGLLELANAQNLNIKQDVCLIEEVTGLSEFPIVLLGKIPQKFLE 261
Query: 71 IPDEVIDMVKEETQ 84
+P+EVI V Q
Sbjct: 262 LPEEVIVSVMRTHQ 275
>UniRef50_Q39ZG7 Cluster: ATPase associated with various cellular
activities, AAA_5; n=2; Geobacter|Rep: ATPase associated
with various cellular activities, AAA_5 - Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
Length = 292
Score = 31.9 bits (69), Expect = 4.9
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 28 HLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDE 74
H++ D W++ R V+ + + +K +P+ ++R Y+ PDE
Sbjct: 144 HVLETDEWVSAAHRPVVIVTSNSEK--ELPDAFLRRCVFHYIDFPDE 188
>UniRef50_A4RU45 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 123
Score = 31.9 bits (69), Expect = 4.9
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 15 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYL 69
+++E ++ GHL CD M+ L I + +G K ++ ++R I+Y+
Sbjct: 24 VVIECRDDVALRGHLEQCDEGMHCTLTNAIRVTPEGHK-TKLERVFVRARMIRYV 77
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 31.9 bits (69), Expect = 4.9
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
PL LL+T+ + V L+N + G L S D MN+ L T ++F+ P IR
Sbjct: 53 PLYLLKTSLEDRVSVLLQNNSSITGLLASFDEHMNLILINAEETGHSLNRFF--PLLVIR 110
Query: 63 GSTIKYL 69
G +I ++
Sbjct: 111 GDSIIFV 117
>UniRef50_Q4Y7X8 Cluster: Small nuclear ribonucleoprotein (SnRNP),
putative; n=4; Plasmodium|Rep: Small nuclear
ribonucleoprotein (SnRNP), putative - Plasmodium
chabaudi
Length = 129
Score = 31.9 bits (69), Expect = 4.9
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVS-------------CDNWMNINLREVICTSRD 49
P+ L+ H + VE K+G Y G LV ++ MN L V +D
Sbjct: 6 PIKLIHEGIGHTISVETKSGILYRGTLVCSFMLILYFLKDLFAEDNMNCLLSNVTVVKQD 65
Query: 50 GDKFWRMPECYIRGSTIKYLRIPD 73
G K + + YIRG ++ ++ PD
Sbjct: 66 G-KQVLLEQVYIRGGSVSFMIFPD 88
>UniRef50_A7ARJ0 Cluster: Small nuclear ribonucleoprotein F,
putative; n=1; Babesia bovis|Rep: Small nuclear
ribonucleoprotein F, putative - Babesia bovis
Length = 83
Score = 31.9 bits (69), Expect = 4.9
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P S + P++V+L NG + G L S D+ MN+ + E DG+ + +IR
Sbjct: 6 PSSYIANITRKPVIVKLNNGTRFRGLLSSLDDRMNLAM-ENTKEYCDGELVKAYGDSFIR 64
Query: 63 GSTIK 67
G+ K
Sbjct: 65 GNNGK 69
>UniRef50_A4VAK3 Cluster: Small nuclear ribonucleoprotein D1; n=7;
Eukaryota|Rep: Small nuclear ribonucleoprotein D1 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 93
Score = 31.5 bits (68), Expect = 6.5
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 36 MNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEV-ID--MVKEETQVKARGRNE 92
MN +L+ V T ++ + ++ IRG+ I+Y +PD + +D +V E +VK++ R
Sbjct: 10 MNTHLKAVKMTLKNREPT-QLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKKREA 68
Query: 93 VS-KGRGQ 99
V+ +GRG+
Sbjct: 69 VAGRGRGR 76
>UniRef50_A7EAP1 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Sclerotinia sclerotiorum 1980
Length = 223
Score = 31.5 bits (68), Expect = 6.5
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 3 PLSLLRTAQNHPMLVELK-NGET-YNGHLVSCDNWMNINL 40
P L+ N +++ LK G+T Y G LVS D++MNI L
Sbjct: 153 PRPFLQNLVNEEVIIRLKWGGQTEYKGKLVSIDSYMNIQL 192
>UniRef50_A6S0C4 Cluster: Predicted protein; n=2; Ascomycota|Rep:
Predicted protein - Botryotinia fuckeliana B05.10
Length = 91
Score = 31.5 bits (68), Expect = 6.5
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 3 PLSLLRTAQNHPMLVELK-NGET-YNGHLVSCDNWMNINL 40
P L+ N +++ LK G+T Y G LVS D++MNI L
Sbjct: 8 PRPFLQNLVNEEVIIRLKWGGQTEYKGKLVSIDSYMNIQL 47
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,998,101
Number of Sequences: 1657284
Number of extensions: 4520681
Number of successful extensions: 8710
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 8586
Number of HSP's gapped (non-prelim): 130
length of query: 139
length of database: 575,637,011
effective HSP length: 93
effective length of query: 46
effective length of database: 421,509,599
effective search space: 19389441554
effective search space used: 19389441554
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 67 (31.1 bits)
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