Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001825-TA|BGIBMGA001825-PA|IPR006649|Like-Sm
ribonucleoprotein, eukaryotic and archaea-type, core,
IPR010920|Like-Sm ribonucleoprotein-related, core, IPR001163|Like-Sm
ribonucleoprotein, core
(139 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 174 2e-44
02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13... 66 7e-12
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741... 66 1e-11
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 42 2e-04
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 42 2e-04
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744... 40 6e-04
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460... 29 1.4
08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068 29 1.8
12_02_0068 + 13155402-13155568,13155674-13155767,13157748-131577... 28 2.4
03_05_0298 - 22873933-22874040,22874807-22875407,22875517-228755... 28 2.4
02_01_0477 + 3431509-3431551,3432243-3432319,3432417-3432542,343... 28 2.4
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547... 27 5.5
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 27 7.3
03_01_0417 - 3197956-3198438,3198550-3200001,3200116-3200277,320... 26 9.6
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 174 bits (423), Expect = 2e-44
Identities = 77/99 (77%), Positives = 85/99 (85%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL+TAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 99
IRG+TIKYLR+PDEVID V+EET R GRG+
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGR 99
>02_01_0022 -
135655-135717,137426-137482,137559-137678,137762-137920
Length = 132
Score = 66.5 bits (155), Expect = 7e-12
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
+P+ LL A H + VELK GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 7 IPVKLLHEAAGHVVTVELKTGEVYRGSMVECEDNW-NCQLDNITFTAKDG-KVSQLEHVF 64
Query: 61 IRGSTIKYLRIPDEV--IDMVKE-ETQVKARGRNEVSKGRGQ 99
IRGS ++++ IPD + M K E +++ +G + + GRG+
Sbjct: 65 IRGSRVRFMIIPDMLKNAPMFKRLEARIRGKG-SAIGVGRGR 105
>03_02_0318 +
7417361-7417519,7417638-7417690,7417770-7417836,
7417925-7417981,7420005-7420067
Length = 132
Score = 66.1 bits (154), Expect = 1e-11
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 60
+P+ LL A H + VELK GE Y G +V C DNW N L + T++DG K ++ +
Sbjct: 7 IPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNW-NCQLDNITFTAKDG-KVSQLEHVF 64
Query: 61 IRGSTIKYLRIPDEV--IDMVKE-ETQVKARGRNEVSKGRGQ 99
IRGS ++++ IPD + M K E +++ +G + + GRG+
Sbjct: 65 IRGSRVRFMIIPDMLKNAPMFKRLEARIRGKG-SAIGVGRGR 105
>02_01_0576 -
4270808-4270871,4271548-4271612,4271717-4271754,
4272060-4272147,4272507-4272625,4273682-4273721
Length = 137
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L P++V+LK G Y G+LVS D++MN+ L DG + E IR
Sbjct: 59 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTE-EYIDGQFSGNLGEILIR 117
Query: 63 GSTIKYLR-IPDE 74
+ + YLR +P++
Sbjct: 118 CNNVLYLRGVPED 130
>02_04_0403 -
22622014-22622075,22622159-22622350,22624834-22624910,
22625026-22625039
Length = 114
Score = 41.5 bits (93), Expect = 2e-04
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L N + +ELKNG T +G + D MN +L+ V T + G +RG+ I
Sbjct: 7 LMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLK-GKNPVTFDHLSVRGNNI 65
Query: 67 KYLRIPDEV---IDMVKEETQVKAR---GRNEVSKGRGQ 99
+Y +PD + +V++ +VKA+ + +GRG+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRVKAKKPTAGKPLGRGRGR 104
>04_04_0192 -
23471346-23471572,23473004-23473195,23474342-23474418,
23475810-23475850,23475928-23475974,23476108-23476194,
23476807-23477011,23477747-23477866
Length = 331
Score = 40.3 bits (90), Expect = 6e-04
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 4 LSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 63
L L N + +ELKNG +G + D MN +L+ V T + G + +RG
Sbjct: 166 LRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLK-GKNPVTLDHLSVRG 224
Query: 64 STIKYLRIPDEV---IDMVKEETQVKAR 88
+ I+Y +PD + +V++ +VKA+
Sbjct: 225 NNIRYYILPDSLNLETLLVEDTPRVKAK 252
>11_06_0609 +
25444941-25444946,25445678-25445765,25446013-25446048,
25446069-25446106,25446219-25446283,25446622-25446685
Length = 98
Score = 29.1 bits (62), Expect = 1.4
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 3 PLSLLRTAQNHPMLVELKNGETY------------NGHLVSCDNWMNINLREVICTSRDG 50
P L P++V+LK G Y +G+LVS D++MN+ L DG
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKVFRFCLTIDYADGYLVSVDSYMNLQLANTE-EYIDG 66
Query: 51 DKFWRMPECYIRGSTIKYLR-IPDE 74
+ E IR + + YLR +P++
Sbjct: 67 QFSGNLGEILIRCNNVLYLRGVPED 91
>08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068
Length = 67
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM-PEC 59
ML S + + VELKN G L S D ++NI L D DK+ M +C
Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMQTQC 58
Query: 60 YI 61
++
Sbjct: 59 FL 60
>12_02_0068 +
13155402-13155568,13155674-13155767,13157748-13157771,
13157956-13158013,13158123-13158166,13158254-13158481
Length = 204
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 4 LSLLRTAQNHPMLVELKNGETYNGHLVSC 32
L ++ +NHP+L+ K G+ G LV C
Sbjct: 110 LRVILDVRNHPVLIHCKRGKHRTGCLVGC 138
>03_05_0298 -
22873933-22874040,22874807-22875407,22875517-22875596,
22875685-22875816
Length = 306
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 55 RMPECYIRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVS 94
R+ EC R +IKYL I DEVI + E K ++ S
Sbjct: 69 RVRECIRRCLSIKYLIIRDEVIKYIGEHKLYKEADGSDTS 108
>02_01_0477 +
3431509-3431551,3432243-3432319,3432417-3432542,
3432638-3432715,3432797-3432952,3433044-3433140,
3433595-3433817,3440445-3440760,3440895-3441390,
3441485-3441651
Length = 592
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 5 SLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV 43
S++ T+ P E GE G CD W + N+ E+
Sbjct: 84 SMIMTSNRFPENYEQMGGEIEQGTQAICDQWASKNIEEL 122
>03_02_0078 +
5476288-5476626,5477474-5477670,5477750-5477885,
5478055-5478132,5478227-5478280,5478466-5478650,
5478781-5480374,5480506-5480700,5480753-5480904,
5481213-5481486,5481597-5481733,5482219-5482258,
5482773-5483261,5483605-5484168
Length = 1477
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 51 DKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQN 100
D+ R+ ++ I+ R +D +KE QV+ RG + V +G N
Sbjct: 387 DERGRIRVSRVKAMGIRMTRDIQRNLDFIKEHEQVRNRGHDSVVEGLANN 436
>06_03_1306 +
29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 36 MNINLREVICTSRDGDKFWRMPECYI 61
M LRE+ C +RD K W M C +
Sbjct: 727 MEEQLREIQCHARDLKKHWEMNGCSV 752
>03_01_0417 -
3197956-3198438,3198550-3200001,3200116-3200277,
3200351-3201133
Length = 959
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 6 LLRTAQNHPMLVELKNGETYNGHLVSC 32
L+R + HP ++EL + Y G L++C
Sbjct: 615 LVRNYRCHPAILELPSELFYGGELIAC 641
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,853
Number of Sequences: 37544
Number of extensions: 121733
Number of successful extensions: 260
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 14
length of query: 139
length of database: 14,793,348
effective HSP length: 75
effective length of query: 64
effective length of database: 11,977,548
effective search space: 766563072
effective search space used: 766563072
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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