GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001825-TA|BGIBMGA001825-PA|IPR006649|Like-Sm
ribonucleoprotein, eukaryotic and archaea-type, core,
IPR010920|Like-Sm ribonucleoprotein-related, core, IPR001163|Like-Sm
ribonucleoprotein, core
         (139 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               63   7e-11
SB_11291| Best HMM Match : LSM (HMM E-Value=6.5e-11)                   49   1e-06
SB_38094| Best HMM Match : LSM (HMM E-Value=0.0077)                    34   0.037
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           30   0.81 
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              27   7.5  
SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)                   27   7.5  

>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 63.3 bits (147), Expect = 7e-11
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 3/98 (3%)

Query: 2   LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
           +P+ +L  A+ H + +E  NGE Y G L+  ++ MN  +  +  T+RDG +  ++ + ++
Sbjct: 5   VPIKILHEAEGHVITLETLNGEVYRGKLIEAEDNMNCQMSNITVTARDG-RVSQLEQVFV 63

Query: 62  RGSTIKYLRIPDEV--IDMVKEETQVKARGRNEVSKGR 97
           RGS I++L +PD +    M K+ TQ  + G     +G+
Sbjct: 64  RGSKIRFLILPDMLKNAPMFKKMTQKGSSGTGAAGRGK 101


>SB_11291| Best HMM Match : LSM (HMM E-Value=6.5e-11)
          Length = 114

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 6   LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
           L++  Q +   VEL+N     G +   D +MNI +++V      G+    +P  ++ G+ 
Sbjct: 16  LIKAVQGYNTTVELRNESYLEGFIEHVDGFMNIKMKDVKFVKASGE-VDNLPAMFVVGTQ 74

Query: 66  IKYLRIPDEVIDMVK--EETQVKARGRNEVSKGR 97
           I+Y+ IPDE IDM K  E+   K +G   V + R
Sbjct: 75  IRYVHIPDE-IDMRKAIEQELGKIQGTRTVKRER 107


>SB_38094| Best HMM Match : LSM (HMM E-Value=0.0077)
          Length = 43

 Score = 34.3 bits (75), Expect = 0.037
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 3  PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNI 38
          P   L +    P++++LK G  Y G+LVS D +MN+
Sbjct: 7  PKPFLNSLTGKPVIIKLKWGMEYKGYLVSVDGYMNL 42


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 6   LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVIC 45
           LL+  ++HP ++EL NG  Y+  L +C + +    RE +C
Sbjct: 804 LLKNYRSHPAILELPNGMFYDDELETCADKLK---RESLC 840


>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 19   LKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDM 78
            ++NGE     L +C + +  +L E     R+ D+F R  E ++ GS  +  +   +V+D+
Sbjct: 1028 VRNGEAM---LYACTD-LGSSLVEAEALLREHDEFQRAIEVHVDGSYDRAEQQVKDVMDV 1083

Query: 79   VKEETQV 85
            +K + QV
Sbjct: 1084 LKVQEQV 1090


>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
          Length = 75

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 3  PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV 43
          PL L+R + +  + V+++N     G L + D  +N+ L +V
Sbjct: 16 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILSDV 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,876,944
Number of Sequences: 59808
Number of extensions: 142780
Number of successful extensions: 291
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 6
length of query: 139
length of database: 16,821,457
effective HSP length: 75
effective length of query: 64
effective length of database: 12,335,857
effective search space: 789494848
effective search space used: 789494848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)