Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001825-TA|BGIBMGA001825-PA|IPR006649|Like-Sm
ribonucleoprotein, eukaryotic and archaea-type, core,
IPR010920|Like-Sm ribonucleoprotein-related, core, IPR001163|Like-Sm
ribonucleoprotein, core
(139 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 190 1e-48
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 190 1e-48
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 190 1e-48
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 190 1e-48
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 190 1e-48
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 190 1e-48
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 190 1e-48
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 190 1e-48
U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein. 59 6e-09
CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein. 59 6e-09
BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear ribonucle... 59 6e-09
BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear ribonucle... 59 6e-09
BC007623-1|AAH07623.1| 123|Homo sapiens LSM10, U7 small nuclear... 52 9e-07
AF394685-1|AAL07689.1| 123|Homo sapiens U7 snRNA-associated Sm-... 52 9e-07
CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein. 48 8e-06
CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein. 48 8e-06
BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small ... 48 8e-06
BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonucl... 48 8e-06
AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small ... 48 8e-06
AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small ... 48 8e-06
AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small... 48 8e-06
AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein. 48 8e-06
AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein. 48 8e-06
AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated Sm-... 48 8e-06
AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like prot... 48 8e-06
AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein. 48 8e-06
AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear ribonucle... 46 3e-05
L36188-1|AAA85339.1| 119|Homo sapiens small nuclear ribonucleop... 45 8e-05
J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantig... 45 8e-05
CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein. 45 8e-05
BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear ribonucle... 45 8e-05
BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear ribonucle... 45 8e-05
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 38 0.009
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 38 0.009
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 38 0.009
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 38 0.009
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 38 0.009
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 38 0.009
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 34 0.14
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 34 0.14
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 34 0.14
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 34 0.14
BC117325-1|AAI17326.1| 1221|Homo sapiens dermatan sulfate epimer... 28 9.5
AK021849-1|BAB13912.1| 314|Homo sapiens protein ( Homo sapiens ... 28 9.5
AF480435-1|AAN32895.1| 1222|Homo sapiens NCAG1 protein. 28 9.5
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 190 bits (463), Expect = 1e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 99
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 190 bits (463), Expect = 1e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 99
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 190 bits (463), Expect = 1e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 99
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 190 bits (463), Expect = 1e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 99
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 190 bits (463), Expect = 1e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 99
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen
protein.
Length = 139
Score = 190 bits (463), Expect = 1e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 99
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 190 bits (463), Expect = 1e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 99
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 190 bits (463), Expect = 1e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 61 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 99
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein.
Length = 126
Score = 58.8 bits (136), Expect = 6e-09
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P+ +L A+ H + E GE Y G L+ ++ MN + + T RDG + ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGSTIKYLRIPDEVIDMVKEETQVKA-RGRNEVS-KGRGQ 99
RGS I++L +P DM+K +K+ + +N+ S GRG+
Sbjct: 64 RGSKIRFLILP----DMLKNAPMLKSMKNKNQGSGAGRGK 99
>CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein.
Length = 126
Score = 58.8 bits (136), Expect = 6e-09
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P+ +L A+ H + E GE Y G L+ ++ MN + + T RDG + ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGSTIKYLRIPDEVIDMVKEETQVKA-RGRNEVS-KGRGQ 99
RGS I++L +P DM+K +K+ + +N+ S GRG+
Sbjct: 64 RGSKIRFLILP----DMLKNAPMLKSMKNKNQGSGAGRGK 99
>BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 58.8 bits (136), Expect = 6e-09
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P+ +L A+ H + E GE Y G L+ ++ MN + + T RDG + ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGSTIKYLRIPDEVIDMVKEETQVKA-RGRNEVS-KGRGQ 99
RGS I++L +P DM+K +K+ + +N+ S GRG+
Sbjct: 64 RGSKIRFLILP----DMLKNAPMLKSMKNKNQGSGAGRGK 99
>BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 58.8 bits (136), Expect = 6e-09
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Query: 2 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
+P+ +L A+ H + E GE Y G L+ ++ MN + + T RDG + ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 62 RGSTIKYLRIPDEVIDMVKEETQVKA-RGRNEVS-KGRGQ 99
RGS I++L +P DM+K +K+ + +N+ S GRG+
Sbjct: 64 RGSKIRFLILP----DMLKNAPMLKSMKNKNQGSGAGRGK 99
>BC007623-1|AAH07623.1| 123|Homo sapiens LSM10, U7 small nuclear
RNA associated protein.
Length = 123
Score = 51.6 bits (118), Expect = 9e-07
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 6 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
LL+ Q V+L++ +G + + D +MNI L +V T R G + ++ + ++ G
Sbjct: 20 LLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGRN 78
Query: 66 IKYLRIPDEV--IDMVKEETQVKARGRNEVSKGRGQ 99
++Y+ IPD+V ++++ Q+ R RN KG+G+
Sbjct: 79 VRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQGR 114
>AF394685-1|AAL07689.1| 123|Homo sapiens U7 snRNA-associated
Sm-like protein LSM10 protein.
Length = 123
Score = 51.6 bits (118), Expect = 9e-07
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 6 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
LL+ Q V+L++ +G + + D +MNI L +V T R G + ++ + ++ G
Sbjct: 20 LLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGRN 78
Query: 66 IKYLRIPDEV--IDMVKEETQVKARGRNEVSKGRGQ 99
++Y+ IPD+V ++++ Q+ R RN KG+G+
Sbjct: 79 VRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQGR 114
>CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEVID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEVID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 95
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEVID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear
ribonuclear protein D homolog protein.
Length = 95
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEVID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEVID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEVID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.pha 3 (pseudogene) protein.
Length = 95
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEVID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein.
Length = 95
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEVID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein
protein.
Length = 95
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEVID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated
Sm-like protein LSm2 protein.
Length = 95
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEVID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like
protein SM-x5 protein.
Length = 95
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEVID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein.
Length = 95
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 58 ECYIRGSTIKYLRIPDEVID 77
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear
ribonucleoprotein Sm D1 protein.
Length = 119
Score = 46.4 bits (105), Expect = 3e-05
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L + +++ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 67 KYLRIPDEV-ID--MVKEETQVKARGRNEVS-KGRGQ 99
+Y +PD + +D +V E +VK++ R V+ +GRG+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>L36188-1|AAA85339.1| 119|Homo sapiens small nuclear
ribonucleoprotein protein.
Length = 119
Score = 45.2 bits (102), Expect = 8e-05
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L + + +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 67 KYLRIPDEV-ID--MVKEETQVKARGRNEVS-KGRGQ 99
+Y +PD + +D +V E +VK++ R V+ +GRG+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantigen
small nuclear ribonucleoprotein Sm-D mRNA, complete cds.
).
Length = 119
Score = 45.2 bits (102), Expect = 8e-05
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L + + +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 67 KYLRIPDEV-ID--MVKEETQVKARGRNEVS-KGRGQ 99
+Y +PD + +D +V E +VK++ R V+ +GRG+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein.
Length = 119
Score = 45.2 bits (102), Expect = 8e-05
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L + + +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 67 KYLRIPDEV-ID--MVKEETQVKARGRNEVS-KGRGQ 99
+Y +PD + +D +V E +VK++ R V+ +GRG+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 45.2 bits (102), Expect = 8e-05
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L + + +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 67 KYLRIPDEV-ID--MVKEETQVKARGRNEVS-KGRGQ 99
+Y +PD + +D +V E +VK++ R V+ +GRG+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 45.2 bits (102), Expect = 8e-05
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 7 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
L + + +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 67 KYLRIPDEV-ID--MVKEETQVKARGRNEVS-KGRGQ 99
+Y +PD + +D +V E +VK++ R V+ +GRG+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 38.3 bits (85), Expect = 0.009
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 63 GSTIKYLRIPDE 74
+ + Y+R +E
Sbjct: 66 CNNVLYIRGVEE 77
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 38.3 bits (85), Expect = 0.009
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 63 GSTIKYLRIPDE 74
+ + Y+R +E
Sbjct: 66 CNNVLYIRGVEE 77
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 38.3 bits (85), Expect = 0.009
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 63 GSTIKYLRIPDE 74
+ + Y+R +E
Sbjct: 66 CNNVLYIRGVEE 77
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 38.3 bits (85), Expect = 0.009
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 63 GSTIKYLRIPDE 74
+ + Y+R +E
Sbjct: 66 CNNVLYIRGVEE 77
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 38.3 bits (85), Expect = 0.009
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 63 GSTIKYLRIPDE 74
+ + Y+R +E
Sbjct: 66 CNNVLYIRGVEE 77
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 38.3 bits (85), Expect = 0.009
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 63 GSTIKYLRIPDE 74
+ + Y+R +E
Sbjct: 66 CNNVLYIRGVEE 77
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 34.3 bits (75), Expect = 0.14
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L+ P++V+L +G Y G L D +MNI L + +G + + +IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE-EYVNGQLKNKYGDAFIR 66
Query: 63 GSTIKYL 69
G+ + Y+
Sbjct: 67 GNNVLYI 73
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 34.3 bits (75), Expect = 0.14
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L+ P++V+L +G Y G L D +MNI L + +G + + +IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE-EYVNGQLKNKYGDAFIR 66
Query: 63 GSTIKYL 69
G+ + Y+
Sbjct: 67 GNNVLYI 73
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 34.3 bits (75), Expect = 0.14
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L+ P++V+L +G Y G L D +MNI L + +G + + +IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE-EYVNGQLKNKYGDAFIR 66
Query: 63 GSTIKYL 69
G+ + Y+
Sbjct: 67 GNNVLYI 73
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 34.3 bits (75), Expect = 0.14
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 3 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
P L+ P++V+L +G Y G L D +MNI L + +G + + +IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE-EYVNGQLKNKYGDAFIR 66
Query: 63 GSTIKYL 69
G+ + Y+
Sbjct: 67 GNNVLYI 73
>BC117325-1|AAI17326.1| 1221|Homo sapiens dermatan sulfate
epimerase-like protein.
Length = 1221
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 37 NINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETQV 85
+++L +V+ TS G + + + S Y+R+P ID+ + E ++
Sbjct: 858 HMDLPDVVITSLPGSGAEILKQLFFNSSDFLYIRVPTAYIDIPETELEI 906
>AK021849-1|BAB13912.1| 314|Homo sapiens protein ( Homo sapiens
cDNA FLJ11787 fis, clone HEMBA1006067. ).
Length = 314
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 37 NINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETQV 85
+++L +V+ TS G + + + S Y+R+P ID+ + E ++
Sbjct: 207 HMDLPDVVITSLPGSGAEILKQLFFNSSDFLYIRVPTAYIDIPETELEI 255
>AF480435-1|AAN32895.1| 1222|Homo sapiens NCAG1 protein.
Length = 1222
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 37 NINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEVIDMVKEETQV 85
+++L +V+ TS G + + + S Y+R+P ID+ + E ++
Sbjct: 859 HMDLPDVVITSLPGSGAEILKQLFFNSSDFLYIRVPTAYIDIPETELEI 907
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,341,925
Number of Sequences: 224733
Number of extensions: 623145
Number of successful extensions: 915
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 45
length of query: 139
length of database: 73,234,838
effective HSP length: 83
effective length of query: 56
effective length of database: 54,581,999
effective search space: 3056591944
effective search space used: 3056591944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -