GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001825-TA|BGIBMGA001825-PA|IPR006649|Like-Sm
ribonucleoprotein, eukaryotic and archaea-type, core,
IPR010920|Like-Sm ribonucleoprotein-related, core, IPR001163|Like-Sm
ribonucleoprotein, core
         (139 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...   151   2e-37
AL117204-27|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    54   3e-08
Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...    48   2e-06
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    48   2e-06
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    46   1e-05
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    36   0.008
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    29   0.92 
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    29   0.92 
L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    29   1.2  
Z81097-15|CAE17865.1|  122|Caenorhabditis elegans Hypothetical p...    28   2.8  
Z66494-7|CAA91261.1|  445|Caenorhabditis elegans Hypothetical pr...    27   4.9  

>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score =  151 bits (365), Expect = 2e-37
 Identities = 68/99 (68%), Positives = 86/99 (86%), Gaps = 1/99 (1%)

Query: 1   MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
           +LPLSLL+TAQNHPMLVELKNGETYNGHL +CD+WMNI+L +VI TS+DGDKF++M E Y
Sbjct: 2   VLPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAY 61

Query: 61  IRGSTIKYLRIPDEVIDMVKEE-TQVKARGRNEVSKGRG 98
           +RGSTIKYLRIP+ V+D+VK E  +V+ + + E S+GRG
Sbjct: 62  VRGSTIKYLRIPETVVDLVKTEVNEVRRQQQREQSRGRG 100


>AL117204-27|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
          protein Y116A8C.42 protein.
          Length = 136

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 2  LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
          +P+ +L  A+ H + +E   GE Y G L   ++ MN  L E + T RDG +  ++   +I
Sbjct: 6  VPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDG-RSHQLDNVFI 64

Query: 62 RGSTIKYLRIPDEVIDMVKEETQVKARGR 90
          RG+ I+++ +P    DM+K     K  GR
Sbjct: 65 RGNKIRFMILP----DMLKNAPMFKNIGR 89


>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
          protein T10G3.6 protein.
          Length = 97

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 5/80 (6%)

Query: 1  MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
          ML  S  ++     ++VELKN  +  G L S D ++N+ L ++  T  D ++F  M    
Sbjct: 1  MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDI--TVSDPERFPHMVSVK 58

Query: 58 ECYIRGSTIKYLRIPDEVID 77
           C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPSDQVD 78


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 5/87 (5%)

Query: 17  VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEV- 75
           +ELKNG   +G ++  D  MN +LR V  T ++ +   ++    IRG+ I+Y+ +PD + 
Sbjct: 17  IELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPV-KLDTLSIRGNNIRYIILPDPLA 75

Query: 76  ID--MVKEETQVKAR-GRNEVSKGRGQ 99
           +D  ++ +E + KAR  R   S+GRG+
Sbjct: 76  LDTLLIDDEPRKKARAARAGASRGRGR 102


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
          ribonucleoprotein protein.
          Length = 71

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 11 QNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLR 70
          ++H + +E   GE Y G L   ++ MN  L E + T RDG +  ++   +IRG+ I+++ 
Sbjct: 1  RSHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDG-RSHQLDNVFIRGNKIRFMI 59

Query: 71 IPD 73
          +PD
Sbjct: 60 LPD 62


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
          protein protein 6 protein.
          Length = 77

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 3  PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
          P   L+     P++V+L +G  Y G L   D +MNI L +    S +G    +  + +IR
Sbjct: 7  PAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYS-NGQLQNKYGDAFIR 65

Query: 63 GSTIKYL 69
          G+ + Y+
Sbjct: 66 GNNVLYI 72


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
          protein F28F8.3 protein.
          Length = 91

 Score = 29.5 bits (63), Expect = 0.92
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 1  MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVI--CTSRDGDKFWRMPE 58
          +LPL L+       + V +KN +   G L   D+++N+ L +V+    + DG +  ++  
Sbjct: 12 LLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDT 71

Query: 59 CYIRGSTIKYL 69
            + G+ I  L
Sbjct: 72 ILLNGNHITML 82


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
          protein Y62E10A.12 protein.
          Length = 102

 Score = 29.5 bits (63), Expect = 0.92
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 3  PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV--ICTSRDGDK 52
          PL LLR + +  + V+++N     G L + D  +N+ L EV    T+R+ D+
Sbjct: 17 PLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDE 68


>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
          ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 3  PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
          P   L +     ++ +LK G  Y G LV+ D++MN+ L        DG+    + E  IR
Sbjct: 9  PKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAE-EYIDGNSQGNLGEILIR 67

Query: 63 GSTIKYL 69
           + + Y+
Sbjct: 68 CNNVLYV 74


>Z81097-15|CAE17865.1|  122|Caenorhabditis elegans Hypothetical
          protein K07A1.15 protein.
          Length = 122

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 5  SLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGS 64
          ++L+      + VEL+N     G L SCD+ ++I + +     RD  K    PE  + G 
Sbjct: 16 AVLQGMAGKKVFVELRNDVYVIGILESCDSNLDIRI-QYATIIRDAQK-TEEPEYLVIGK 73

Query: 65 TIKYLRIPDEVI 76
           ++++    +V+
Sbjct: 74 HVRFVHFEHQVV 85


>Z66494-7|CAA91261.1|  445|Caenorhabditis elegans Hypothetical
           protein C34C6.7 protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 9   TAQNHPMLVELKNGETYNGHLVS 31
           TAQN P L +LKN E    H +S
Sbjct: 264 TAQNVPKLKQLKNQEILKDHFIS 286


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,174
Number of Sequences: 27539
Number of extensions: 103477
Number of successful extensions: 309
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 11
length of query: 139
length of database: 12,573,161
effective HSP length: 74
effective length of query: 65
effective length of database: 10,535,275
effective search space: 684792875
effective search space used: 684792875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)