GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001825-TA|BGIBMGA001825-PA|IPR006649|Like-Sm
ribonucleoprotein, eukaryotic and archaea-type, core,
IPR010920|Like-Sm ribonucleoprotein-related, core, IPR001163|Like-Sm
ribonucleoprotein, core
         (139 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   8.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   8.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    20   8.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 54  WRMPECYIRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSK 95
           WR     ++       R  D+V++  K +   K R  NE+SK
Sbjct: 232 WRKDGGTVKKKVNYVYRSVDQVLEDGKLKPNKKVRISNEMSK 273


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 57  PECYIRGSTIKYLRIPD 73
           P   + G+TI +LR PD
Sbjct: 301 PSATLVGTTITHLRDPD 317


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 5/17 (29%), Positives = 11/17 (64%)

Query: 2   LPLSLLRTAQNHPMLVE 18
           +P+ L+   +NHP  ++
Sbjct: 335 MPMELIENLRNHPEYID 351


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,012
Number of Sequences: 429
Number of extensions: 1259
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 139
length of database: 140,377
effective HSP length: 52
effective length of query: 87
effective length of database: 118,069
effective search space: 10272003
effective search space used: 10272003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)