Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001824-TA|BGIBMGA001824-PA|undefined
(269 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0008 - 233137-233279,233712-233827,235376-235720,236218-23... 29 3.0
08_02_1592 + 28078055-28078966 29 3.9
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 29 5.2
08_01_0793 - 7685702-7686955 28 6.9
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 28 6.9
04_03_0187 + 12436934-12437108,12438020-12439044 28 6.9
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 28 9.1
>09_01_0008 -
233137-233279,233712-233827,235376-235720,236218-236292,
236508-236636,237516-237589,237836-237968,239366-239584,
239671-239756,239843-241107,241304-241640,242548-242862,
243614-243697,243776-243883,243981-244079
Length = 1175
Score = 29.5 bits (63), Expect = 3.0
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 10/116 (8%)
Query: 74 NSAERNVDRFNIDEIITKKTIGDFLERQNVNFETEAPKDVLFIKAKNNEDIEKTTKAETR 133
N++E+ +F+ E + K D + VN T P DV K N +E+ + +T
Sbjct: 540 NNSEKMGGKFDDTEFVDKFVAFDKYGMKRVNTVTVWPVDVRTKTGKRNHPLEEQKECQTG 599
Query: 134 -RHGTDTRKLKIKSLNCAELDCNNT--QDSEYVWDKHTRVNSWSLSMGINGRYCTH 186
R+G + + S+ C C +D + +H + L NG C H
Sbjct: 600 CRNGNENAMV---SIGCGSYVCGRVPPKDEDNACHEHAPPDVNHL----NGPLCRH 648
>08_02_1592 + 28078055-28078966
Length = 303
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 98 LERQNVNFETEAPKDVLFIKAKNNEDIEKTTKAETRRHGTDTRKLKIK 145
LE + N T+ + + + N E E+T++ E R G K+K+K
Sbjct: 164 LEEDSKNKRTKISESGAYTSSSNQETEEETSRKEKRPEGQKKAKVKLK 211
>12_02_0133 -
14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 61 DAPNVTDDVIFVPNSAERNVDRFNIDEIITKKTIG-DFLERQN 102
D N+ DV F N DR ++DE I+ T G F E QN
Sbjct: 889 DQMNIPPDVPFSTCEPNLNTDRMDVDESISVLTSGPSFSEGQN 931
>08_01_0793 - 7685702-7686955
Length = 417
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 98 LERQNVNFETEAPKDVLFIKAKNNEDIEKTTKAETRRHGTDTRKLKIK 145
LE + N T+ + + + N E E+T++ E R G K K+K
Sbjct: 278 LEEDSKNKRTKISESGAYTSSSNQETEEETSRKEKRPEGQKKAKAKLK 325
>05_01_0166 +
1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 89 ITKKTIGDFLERQNVNFETEAPKDVLFIKAKNNEDIEKTTKAE-TRRHGTDTRKL 142
ITK F ER+ + F+ E P+ ++ +N + E ++E T RHG + K+
Sbjct: 587 ITKARFVGFNERKPIYFDHEKPQFQIWDSDDDNINQEDNLRSEVTPRHGLKSSKI 641
>04_03_0187 + 12436934-12437108,12438020-12439044
Length = 399
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 98 LERQNVNFETEAPKDVLFIKAKNNEDIEKTTKAETRRHGTDTRKLKIK 145
LE + N T+ + + + N E E+T++ E R G K K+K
Sbjct: 260 LEEDSKNKRTKISESGAYTSSSNQETEEETSRKEKRPEGQKKAKAKLK 307
>09_06_0176 + 21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 51 KLTPNVGDATDAPNVTDDVIFVPNSAE-RNVDRFNIDEIITKKTIGDFLERQNVNFETEA 109
++ PNV DA D +D I PN + + D NIDEI+ + D L+ + + +
Sbjct: 994 EILPNVDDALDNSAADNDAI-CPNVPDASDSDAANIDEIL--PNVNDALDNNSADNDAIC 1050
Query: 110 P 110
P
Sbjct: 1051 P 1051
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.134 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,060,676
Number of Sequences: 37544
Number of extensions: 334605
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 8
length of query: 269
length of database: 14,793,348
effective HSP length: 81
effective length of query: 188
effective length of database: 11,752,284
effective search space: 2209429392
effective search space used: 2209429392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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