GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001824-TA|BGIBMGA001824-PA|undefined
         (269 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    24   1.4  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   4.2  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 2   YYKFVLIPTIVFIPFFILDSRCHI 25
           +Y FV++  ++F+  F+L+  C I
Sbjct: 114 FYGFVIVAHLLFLVIFVLNIWCWI 137


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 189 PTSCPDSYDPQCAIS 203
           P  CP  Y+P C  S
Sbjct: 30  PPRCPPIYEPSCQYS 44


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,393
Number of Sequences: 317
Number of extensions: 3037
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 269
length of database: 114,650
effective HSP length: 56
effective length of query: 213
effective length of database: 96,898
effective search space: 20639274
effective search space used: 20639274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)