GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001824-TA|BGIBMGA001824-PA|undefined
         (269 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.005
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 32.3 bits (70), Expect = 0.005
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 180 NGRYCTHTCPTSCPDSYDPQCAISQTGQKKVFANHCKMDYNSCLYGVAWYMRPLSECV 237
           N       C   CP  + P CA       K++ANHC++   +C  G +     L  C+
Sbjct: 98  NSTIAVCVCMRKCPRRHRPVCA----SNGKIYANHCELHRAACHSGSSLTKSRLMRCL 151


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 7  LIPTIVFIPFFILDSRCHIPKNNSDVFVTYEGHAEVNEKAMTDVKLTPNVGDATDAPNVT 66
          ++  +V + F +  SRC   K N   +   E     N     D ++ P+  +ATD P V 
Sbjct: 5  VLKLLVLLTFLLHPSRCTQGKVN---YREKEKEVLDNILGGYDARIRPSGENATDGPAVV 61

Query: 67 DDVIFV 72
             IFV
Sbjct: 62 RVNIFV 67


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 108 EAPKDVLFIKAKNNEDIEKTTKAETRRHGTDTRKL 142
           E P DVL+ +   +ED  +T K  ++ +G   R L
Sbjct: 569 EVPSDVLYNRLVVSEDGSETFKYSSQPYGFPERLL 603


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 7  LIPTIVFIPFFILDSRCHIPKNNSDVFVTYEGHAEVNEKAMTDVKLTPNVGDATDAPNVT 66
          ++  +V + F +  SRC   K N   +   E     N     D ++ P+  +ATD P + 
Sbjct: 5  VLKLLVLLTFLLHPSRCTQGKVN---YREKEKEVLDNILGGYDARIRPSGENATDGPAIV 61

Query: 67 DDVIFVPNSA 76
             +FV + A
Sbjct: 62 RVNLFVRSIA 71


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 95  GDFLERQNVNFETEAPKDVLFIKAKNNEDIEKTTKAETRRHG-TDTRKLK 143
           GDF+   N+    E  +D +FI     +D    T     +H  T + KL+
Sbjct: 180 GDFITENNLPLGLEVWRDKVFITLPKWKDGIPVTLTTVPKHSKTKSPKLR 229


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 78  RNVDRFNIDEIITKK 92
           RN+D +N +++ TKK
Sbjct: 369 RNIDEYNNNDLDTKK 383


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 20  DSRCHIPKNNSDVFVTYEGHAEVNEKAMTDVKLTPN 55
           +SRC + +    + V+Y     +N K  T ++ TP+
Sbjct: 329 NSRCSVKREKIKISVSYPSTETLNTKCNT-LERTPS 363


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,552
Number of Sequences: 429
Number of extensions: 3861
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 7
length of query: 269
length of database: 140,377
effective HSP length: 57
effective length of query: 212
effective length of database: 115,924
effective search space: 24575888
effective search space used: 24575888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)