GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001823-TA|BGIBMGA001823-PA|IPR003579|Ras small GTPase,
Rab type, IPR013753|Ras
         (131 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    20   8.6  

>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 69  TYSQDLNGHFLTSSKTGENVD 89
           T   DLN HF T    G   D
Sbjct: 425 TIGYDLNQHFETGLPAGSYCD 445


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,837
Number of Sequences: 317
Number of extensions: 1116
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 131
length of database: 114,650
effective HSP length: 51
effective length of query: 80
effective length of database: 98,483
effective search space:  7878640
effective search space used:  7878640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)