Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001823-TA|BGIBMGA001823-PA|IPR003579|Ras small GTPase,
Rab type, IPR013753|Ras
(131 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 60 8e-11
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 59 3e-10
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 56 2e-09
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 54 5e-09
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 54 1e-08
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 43 1e-05
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 38 4e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 35 0.005
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 28 0.54
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 0.72
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 27 0.72
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 27 1.3
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 2.2
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 26 2.2
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 3.8
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 3.8
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos... 25 3.8
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 25 5.1
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 5.1
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 24 6.7
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 24 6.7
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 24 8.9
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 24 8.9
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 60.5 bits (140), Expect = 8e-11
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 1 MTRIYYRGAHAAIICYEPSSHESWTRLRHWLHELRTVEDS-CKVYLCGTKKDLLDGGFVK 59
+ R YYRGA A++ Y+ ++ +S+ L WL ++R + S V L G+K DL + V
Sbjct: 78 VARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVS 137
Query: 60 REVAEEIVNTYSQDLNGHFLTSSKTGENVDELFQKIVDDLAADVEV 105
E A E + + ++ TSS TG NV+E F +V + +E+
Sbjct: 138 TEEAAEFCS--EKHISSAHETSSYTGSNVEECFLSVVSTIITRIEL 181
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 58.8 bits (136), Expect = 3e-10
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 1 MTRIYYRGAHAAIICYEPSSHESWTRLRHWLHEL-RTVEDSCKVYLCGTKKDLLDGGFVK 59
+T YYRGAH II Y+ + +S+ ++ WL E+ R + L G K D++D V+
Sbjct: 73 ITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVE 132
Query: 60 REVAEEIVNTYSQDLNGHFL-TSSKTGENVDELF 92
VA+E ++ LN FL TS+K NV++ F
Sbjct: 133 YSVAKE----FADSLNIPFLETSAKDSTNVEQAF 162
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 55.6 bits (128), Expect = 2e-09
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 1 MTRIYYRGAHAAIICYEPSSHESWTRLRHWLHELRTVEDS-CKVYLCGTKKDLLDGGFVK 59
+T YYRGA A+I Y+ + S+ + WL ELR DS + L G K DLL
Sbjct: 75 ITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLH----L 130
Query: 60 REVAEEIVNTYSQDLNGHFL-TSSKTGENVDELFQKIVDDL 99
R V+ E ++ + N F+ TS+ NV+E FQ ++ ++
Sbjct: 131 RAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEI 171
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 54.4 bits (125), Expect = 5e-09
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 5 YYRGAHAAIICYEPSSHESWTRLRHWLHELRTVE-DSCKVYLCGTKKDLLDGGFVKREVA 63
Y R + AII Y+ ++H S+ W+ ++R D + L G K DL D KR+V
Sbjct: 80 YIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLAD----KRQVT 135
Query: 64 EEIVNTYSQDLN-GHFLTSSKTGENVDELFQKIVDDLAA--DVEVMKT 108
+E +++L H TS+K G NV LF+KI L +VE T
Sbjct: 136 QEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENVETQST 183
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 53.6 bits (123), Expect = 1e-08
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 4 IYYRGAHAAIICYEPSSHESWTRLRHWLHEL-RTVEDSCKVYLCGTKKDLLDGGFVKREV 62
+YYR A+ AI+ Y+ + S + + W+ EL R + + L G K DL +R V
Sbjct: 83 MYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQ---ERRAV 139
Query: 63 AEEIVNTYSQDLNGHFL-TSSKTGENVDELFQKIVDDL 99
+ Y+ + N F TS+KT ENV+ELF I L
Sbjct: 140 EKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKL 177
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 43.2 bits (97), Expect = 1e-05
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 1 MTRIYYRGAHAAIICYEPSSHESWTRLRHWLH--ELRTVEDSCKVYLCGTKKDLLDGGFV 58
+T YYRGA ++ Y+ + +S+ +R W E E+ K+ L G K D D
Sbjct: 74 ITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKI-LIGNKCDCED---- 128
Query: 59 KREVAEEIVNTYSQDLNGHFL-TSSKTGENVDELF 92
+R+V+ E + +L FL S+KT NVDE F
Sbjct: 129 QRQVSFEQGQALADELGVKFLEASAKTNVNVDEAF 163
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 38.3 bits (85), Expect = 4e-04
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 5 YYRGAHAAIICYEPSSHESWTRLRHWLHEL--RTVEDSCKVYLCGTKKDLLDGGFVKREV 62
+YRGA +I Y ++ +S+ + +W E +T +D C + + +D KR V
Sbjct: 77 FYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDEC-AFPFIIVGNQIDKDASKRAV 135
Query: 63 AEEIVNTYSQDLNG----HFLTSSKTGENVDELFQKI 95
+ Y + +G HF S+K NV +LF+ +
Sbjct: 136 SLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETV 172
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 34.7 bits (76), Expect = 0.005
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 5 YYRGAHAAIICYEPSSHESWTRLRHWLHELRTVEDSCKVYLCGTKKDLLDGGFVKREVAE 64
YY II ++ +S ++ + HW +L V ++ + LCG K D+ + R+V
Sbjct: 78 YYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENIPIVLCGNKVDVKE-----RKVKA 132
Query: 65 EIVNTYSQDLNGHFLTSSKTGENVDELF 92
+ + + + ++ S+K+ N ++ F
Sbjct: 133 KAITFHRKKNLQYYDISAKSNYNFEKPF 160
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 27.9 bits (59), Expect = 0.54
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 65 EIVNTYSQDLNGHFLTSSKTGENVDELFQKIVDDL 99
++ T+ ++ L SSKTG+NV+++ +I+ +
Sbjct: 199 QVQQTFDIPMSKPILVSSKTGKNVEQILPEIIQKI 233
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 0.72
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 46 CGTKKDLLDGGFVKREVAEEI 66
C TKKDLL+G + + EE+
Sbjct: 44 CSTKKDLLEGNNIMTRIPEEL 64
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 27.5 bits (58), Expect = 0.72
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 42 KVYLCGTKKDLLDG 55
KVYLCG KK LDG
Sbjct: 518 KVYLCGGKKGFLDG 531
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.6 bits (56), Expect = 1.3
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 24 WTRLRHWLHELRTVEDSCKVY---LCGTKKDLLDGGFVKREVAEEIVNTYSQDLNGHFLT 80
++R R L L +E+ Y L +K +LD A+++ ++YS DL +
Sbjct: 200 YSRRRQVLERLSKIEEQNLKYTSKLASVEKLMLDSD------AQDLYSSYSHDLIPSQIE 253
Query: 81 SSKTGEN---VDELFQKIVDDLAA 101
+ K G N D+ K D+L+A
Sbjct: 254 AGKNGANPDVFDDTHDKYTDNLSA 277
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 2.2
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 58 VKREVAEEIVNTYSQDLNGHFLTSSKTGENVDELFQKIVDDLAADVEVMKTVTESRLLLT 117
+K + +EI+N +S DL +K + V + + +VD+ A ++ E+ +
Sbjct: 419 IKHKTLQEILNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSN 478
Query: 118 ELD 120
+D
Sbjct: 479 RID 481
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.8 bits (54), Expect = 2.2
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 48 TKKDLLDGGFVKREVAEEIVNTYSQDLNG 76
T KDL GG +K+EVA V+TY Q NG
Sbjct: 459 TAKDLSTGGILKQEVA-AFVHTY-QYSNG 485
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 3.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 71 SQDLNGHFLTSSKTGENVDEL 91
S+ +NGHF T S+T + D++
Sbjct: 565 SKSINGHFETYSRTSMDTDDV 585
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.0 bits (52), Expect = 3.8
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 57 FVKREVAEEIVNTYSQDLNG-HFLTSSKTGENVDELFQKIVDDLAADVEVMKTVTES--R 113
F+K A + + Y ++L FLT K + E KI D L+ D+E +K + S R
Sbjct: 888 FIKELCALYVSDAYDKELLLISFLTFLKKSKIDYETADKIWDILSKDIENIKDFSTSPFR 947
Query: 114 LLLTE 118
LL+E
Sbjct: 948 TLLSE 952
>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.0 bits (52), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 17 EPSSHESWTRLRHWLHELRTVEDSCKVYLCGTKKDLLDGGFVKREV 62
E S H++ TR R+ L RT + + L K L DG V+ V
Sbjct: 132 EKSKHKNKTRTRYVLFSWRTDVNDIERKLKSVKDFLQDGNIVEIHV 177
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 5.1
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 58 VKREVAEEIVNTYSQDLNGHFLTSSKTGEN 87
VK E +EI N S LNG S G N
Sbjct: 10 VKAETKDEIANDGSPQLNGDNNIQSSDGHN 39
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 24.6 bits (51), Expect = 5.1
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 21 HESWTRLRHWLHELRTVEDSCKVYLCG 47
H W +L +L ELRT + C + L G
Sbjct: 873 HGLWQKLEEFLGELRT-QTKCSIKLSG 898
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.2 bits (50), Expect = 6.7
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 94 KIVDDLAADVEVMKTVTESRLLLTEL 119
+++D++A D E++ T +SR+ + L
Sbjct: 452 QMIDNIAGDTEMLVTTNDSRIRIYNL 477
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 24.2 bits (50), Expect = 6.7
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 18 PSSHESWTRLRHWLHELRTVEDSCKVYLCGTKKDLLDGGFVKREVAEEIVNTYSQ 72
P+S S + LR W+HE E ++ + G + DL + + RE+ E+ N Q
Sbjct: 611 PASEISVSELRPWVHEAVKRELGIRIMIRG-RYDLKE--ILYRELMEDAENWQCQ 662
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 23.8 bits (49), Expect = 8.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 75 NGHFLTSSKTGENVDE 90
NG F T++K G NVD+
Sbjct: 696 NGSFDTNAKNGNNVDD 711
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 23.8 bits (49), Expect = 8.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 61 EVAEEIVNTYSQDLNGHFLTS 81
E+ +EI NT+SQD ++L S
Sbjct: 461 EIYDEIRNTFSQDKAWNYLAS 481
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,169
Number of Sequences: 5004
Number of extensions: 23461
Number of successful extensions: 72
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 24
length of query: 131
length of database: 2,362,478
effective HSP length: 66
effective length of query: 65
effective length of database: 2,032,214
effective search space: 132093910
effective search space used: 132093910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)
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