GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001823-TA|BGIBMGA001823-PA|IPR003579|Ras small GTPase,
Rab type, IPR013753|Ras
         (131 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   1.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   3.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   3.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.9  

>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 16/83 (19%), Positives = 37/83 (44%)

Query: 33  ELRTVEDSCKVYLCGTKKDLLDGGFVKREVAEEIVNTYSQDLNGHFLTSSKTGENVDELF 92
           +LR V++ CK      ++ + D   V  +V +E    Y++ +   F    ++G   + + 
Sbjct: 25  QLRDVQEICKAESGIDQQTVDDINEVNFDVEDEKPQRYNECILKQFNIVDESGNFKENIV 84

Query: 93  QKIVDDLAADVEVMKTVTESRLL 115
           Q++      +  + K V E  ++
Sbjct: 85  QELTSIYLDENVIKKLVAECSVI 107


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 7   RGAHAAIICYEPSSHESWTRLRHWLHE 33
           RG  A + C  PS  +   R+  WL E
Sbjct: 144 RGCTAVLRCVVPSFVKDLVRVVSWLQE 170


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 7   RGAHAAIICYEPSSHESWTRLRHWLHE 33
           RG  A + C  PS  +   R+  WL E
Sbjct: 144 RGCTAVLRCVVPSFVKDLVRVVSWLQE 170


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 5   YYRGAHAAIICYEPSSHESWTRLRHWLHELR 35
           Y RG+    +  +PS+ E  T+   W+ + R
Sbjct: 397 YERGSMTVSVTSKPSTMERQTQTEVWIPKWR 427


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/37 (21%), Positives = 21/37 (56%)

Query: 91  LFQKIVDDLAADVEVMKTVTESRLLLTELDKRKSKKD 127
           L  ++ + + +   ++KT+   +  +T ++ R SKK+
Sbjct: 90  LVLRLREGIGSLARILKTIENFKGTVTHVESRPSKKE 126


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 66  IVNTYSQDLNGHFLTSSKTGENVDELFQK 94
           I N     LNG F      GE+ +E  QK
Sbjct: 410 ISNATLSFLNGEFEVEPAHGEDREEALQK 438


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,102
Number of Sequences: 429
Number of extensions: 1339
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 131
length of database: 140,377
effective HSP length: 51
effective length of query: 80
effective length of database: 118,498
effective search space:  9479840
effective search space used:  9479840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)