GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001822-TA|BGIBMGA001822-PA|IPR010285|Protein of unknown
function DUF889, eukaryote
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    35   0.012
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    28   1.4  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    27   3.2  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    27   3.2  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   4.3  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   9.8  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 178 GENVLIPRIPIIPTDLP---FQFKRLQFPLKIAFAMTINKAQGQTLKVAGINL 227
           GE  ++ +      +LP    Q  R Q PL +A+A++I+KAQGQTL    ++L
Sbjct: 684 GERTIVVQRETWNIELPNGEVQASRSQIPLILAYAISIHKAQGQTLDRVKVDL 736



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 74  LAPTNEMVGQINEQIMSRVEGDIVEFLSVDTVMDTEQVTSYPVEFLNSLELSGVPSHKLR 133
           L PT   V + N+  M ++  + V F ++D+    ++      EF + L    +    L 
Sbjct: 536 LFPTRYEVERSNDMRMQQINQNPVTFTAIDSGTVRDK------EFRDRLLQGCMAPATLV 589

Query: 134 LKVGVPVLLMRNLDAPRLCNGT 155
           LKV   V+L++N+D  +L NG+
Sbjct: 590 LKVNAQVMLIKNID-DQLVNGS 610


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 22  GEDRMAKDGNGMITLDREFC--NVVHNPDDLNNFVYSELLTNMRNRDWLCERAILAPTNE 79
           G++   +D  G +   +  C  NV+ + ++LN+ +          R+W   + +L P++E
Sbjct: 32  GKEMCEEDVIGSMAYAKALCQKNVI-SEEELNSILKG---LEQIQREWNSGQFVLEPSDE 87

Query: 80  MVGQINEQIMSRVEGDI 96
            V   NE+ ++ + GD+
Sbjct: 88  DVHTANERRLTEIIGDV 104


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 106 MDTEQVTSYPVEFLNSLELSGVPSHKL-RLKVGVPVLLMRNLD---APRLCNGTRLQVTH 161
           M+  ++    +E  N+   S  P+  L  + V +P ++   LD   AP++  G R+Q T 
Sbjct: 646 MEDTRLLPASLELANTQGASNPPTSALPTVPVPLPSIITEFLDELPAPQVITGPRIQPTK 705

Query: 162 LGRNIVKAII 171
           L  +I+K+ I
Sbjct: 706 LIDHIIKSDI 715


>SPAC3C7.09 |set8||lysine methyltransferase Set8
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 13 QYAAALLKIGEDRMAKDGNGMITLDREFCNVVHNPDDLNNFVYSELLTNMRNR-DWLCER 71
          Q+A    +I   ++ K GNG+ +L+R     V     L N +  + +   RN  D     
Sbjct: 11 QFAPGAKQITIKKIRKKGNGIFSLNRYTSGTVLLEVPLENIICRKTVEQFRNSCDKFASI 70

Query: 72 AILAPTNEM 80
          A L   N+M
Sbjct: 71 ATLEEWNDM 79


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 95  DIVEFLSVDTVMDTEQVTSYPVEFLNSLELSGVPSHKLRLKVGVP 139
           ++ E+L+  TV D  + T+  VE +  LEL  +P  K     GVP
Sbjct: 527 EVTEYLTSKTV-DLPRSTADEVESVIKLELESIPVAKQNAFGGVP 570


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 30  GNGMITLDREFCNVVHNPDDLNNFVYSELLTNMRNR 65
           G G+ TL R F ++  N DD+  +    L+  + +R
Sbjct: 123 GKGISTLTRSFADMQDNWDDIEGYYKVVLMEELDSR 158


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,018,407
Number of Sequences: 5004
Number of extensions: 40511
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 7
length of query: 240
length of database: 2,362,478
effective HSP length: 71
effective length of query: 169
effective length of database: 2,007,194
effective search space: 339215786
effective search space used: 339215786
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)