GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001822-TA|BGIBMGA001822-PA|IPR010285|Protein of unknown
function DUF889, eukaryote
         (240 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ437529-1|ABD92708.1|  641|Homo sapiens DNA helicase PIF1 protein.    48   2e-05
AY498716-1|AAS77398.1|  641|Homo sapiens PIF1/RRM3 DNA helicase-...    48   2e-05
AF108138-1|AAD44047.1|  374|Homo sapiens DNA helicase homolog pr...    48   2e-05
AB185927-1|BAE47455.1|  707|Homo sapiens PIF1 DNA helicase isofo...    48   2e-05
AB185926-1|BAE47454.1|  641|Homo sapiens PIF1 DNA helicase isofo...    48   2e-05

>DQ437529-1|ABD92708.1|  641|Homo sapiens DNA helicase PIF1 protein.
          Length = 641

 Score = 48.4 bits (110), Expect = 2e-05
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 109 EQVTSYPVEFLNSLELSGVPSHKLRLKVGVPVLLMRNLDAPR-LCNGTRLQVTHL---GR 164
           E + S P E  ++L+     S  L+LK+G  V+L++NL   R L NG R  V      GR
Sbjct: 451 EAMDSNP-ELASTLDAQCPVSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVVGFEAEGR 509

Query: 165 NIVKAIIMTGMAKGENVLIPRIPIIPTDLPFQFKRLQFPLKIAFAMTINKAQGQTLKVAG 224
            + +   + G+   E +   R  +  T       R Q PL++A+AM+I+K+QG TL    
Sbjct: 510 GLPQVRFLCGVT--EVIHADRWTVQATGGQL-LSRQQLPLQLAWAMSIHKSQGMTLDCVE 566

Query: 225 INL 227
           I+L
Sbjct: 567 ISL 569


>AY498716-1|AAS77398.1|  641|Homo sapiens PIF1/RRM3 DNA
           helicase-like protein protein.
          Length = 641

 Score = 48.4 bits (110), Expect = 2e-05
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 109 EQVTSYPVEFLNSLELSGVPSHKLRLKVGVPVLLMRNLDAPR-LCNGTRLQVTHL---GR 164
           E + S P E  ++L+     S  L+LK+G  V+L++NL   R L NG R  V      GR
Sbjct: 451 EAMDSNP-ELASTLDAQCPVSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVVGFEAEGR 509

Query: 165 NIVKAIIMTGMAKGENVLIPRIPIIPTDLPFQFKRLQFPLKIAFAMTINKAQGQTLKVAG 224
            + +   + G+   E +   R  +  T       R Q PL++A+AM+I+K+QG TL    
Sbjct: 510 GLPQVRFLCGVT--EVIHADRWTVQATGGQL-LSRQQLPLQLAWAMSIHKSQGMTLDCVE 566

Query: 225 INL 227
           I+L
Sbjct: 567 ISL 569


>AF108138-1|AAD44047.1|  374|Homo sapiens DNA helicase homolog
           protein.
          Length = 374

 Score = 48.4 bits (110), Expect = 2e-05
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 109 EQVTSYPVEFLNSLELSGVPSHKLRLKVGVPVLLMRNLDAPR-LCNGTRLQVTHL---GR 164
           E + S P E  ++L+     S  L+LK+G  V+L++NL   R L NG R  V      GR
Sbjct: 184 EAMDSNP-ELASTLDAQCPVSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVVGFEAEGR 242

Query: 165 NIVKAIIMTGMAKGENVLIPRIPIIPTDLPFQFKRLQFPLKIAFAMTINKAQGQTLKVAG 224
            + +   + G+   E +   R  +  T       R Q PL++A+AM+I+K+QG TL    
Sbjct: 243 GLPQVRFLCGVT--EVIHADRWTVQATGGQL-LSRQQLPLQLAWAMSIHKSQGMTLDCVE 299

Query: 225 INL 227
           I+L
Sbjct: 300 ISL 302


>AB185927-1|BAE47455.1|  707|Homo sapiens PIF1 DNA helicase isoform
           beta protein.
          Length = 707

 Score = 48.4 bits (110), Expect = 2e-05
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 109 EQVTSYPVEFLNSLELSGVPSHKLRLKVGVPVLLMRNLDAPR-LCNGTRLQVTHL---GR 164
           E + S P E  ++L+     S  L+LK+G  V+L++NL   R L NG R  V      GR
Sbjct: 451 EAMDSNP-ELASTLDAQCPVSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVVGFEAEGR 509

Query: 165 NIVKAIIMTGMAKGENVLIPRIPIIPTDLPFQFKRLQFPLKIAFAMTINKAQGQTLKVAG 224
            + +   + G+   E +   R  +  T       R Q PL++A+AM+I+K+QG TL    
Sbjct: 510 GLPQVRFLCGVT--EVIHADRWTVQATGGQL-LSRQQLPLQLAWAMSIHKSQGMTLDCVE 566

Query: 225 INL 227
           I+L
Sbjct: 567 ISL 569


>AB185926-1|BAE47454.1|  641|Homo sapiens PIF1 DNA helicase isoform
           alpha protein.
          Length = 641

 Score = 48.4 bits (110), Expect = 2e-05
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 109 EQVTSYPVEFLNSLELSGVPSHKLRLKVGVPVLLMRNLDAPR-LCNGTRLQVTHL---GR 164
           E + S P E  ++L+     S  L+LK+G  V+L++NL   R L NG R  V      GR
Sbjct: 451 EAMDSNP-ELASTLDAQCPVSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVVGFEAEGR 509

Query: 165 NIVKAIIMTGMAKGENVLIPRIPIIPTDLPFQFKRLQFPLKIAFAMTINKAQGQTLKVAG 224
            + +   + G+   E +   R  +  T       R Q PL++A+AM+I+K+QG TL    
Sbjct: 510 GLPQVRFLCGVT--EVIHADRWTVQATGGQL-LSRQQLPLQLAWAMSIHKSQGMTLDCVE 566

Query: 225 INL 227
           I+L
Sbjct: 567 ISL 569


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.137    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,938,605
Number of Sequences: 224733
Number of extensions: 1195042
Number of successful extensions: 1809
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1799
Number of HSP's gapped (non-prelim): 5
length of query: 240
length of database: 73,234,838
effective HSP length: 88
effective length of query: 152
effective length of database: 53,458,334
effective search space: 8125666768
effective search space used: 8125666768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)