GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001822-TA|BGIBMGA001822-PA|IPR010285|Protein of unknown
function DUF889, eukaryote
         (240 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040649-5|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ...   118   3e-27
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ...   118   3e-27
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ...   118   3e-27
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...   118   3e-27
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ...   118   3e-27
AC024751-9|AAK21508.2|  677|Caenorhabditis elegans Pif1p dna hel...    55   4e-08
AB015041-1|BAA28677.1|  677|Caenorhabditis elegans PIF1 protein.       55   4e-08
Z81499-1|CAB04087.1|  471|Caenorhabditis elegans Hypothetical pr...    40   0.001
AF003387-3|AAM22047.1|   62|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    28   6.9  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    28   6.9  

>AF040649-5|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
            protein F33H12.6 protein.
          Length = 1360

 Score =  118 bits (285), Expect = 3e-27
 Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 4/161 (2%)

Query: 69   CERAILAPTNEMVGQINEQIMSRVEGDIVEFLSVDTVMDTEQVTS--YPVEFLNSLELSG 126
            C+  IL P N  V Q+N+ + +R+ G+   +LS D V+   Q  +  YP EFLN +  S 
Sbjct: 1157 CDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFLNKMSPSS 1216

Query: 127  VPSHKLRLKVGVPVLLMRNLD-APRLCNGTRLQVTHLGRNIVKAIIMTGMAKGENVLIPR 185
            +P H L+LK G  ++L+RNLD +  LCNG+R  V  L  + +     TG  KG   +IPR
Sbjct: 1217 LPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLGCRFATGERKGHFTIIPR 1276

Query: 186  IPII-PTDLPFQFKRLQFPLKIAFAMTINKAQGQTLKVAGI 225
            I      ++ FQ +R QFP++++FA++INKAQGQ+    G+
Sbjct: 1277 IDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGL 1317


>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
            protein ZK250.9 protein.
          Length = 1466

 Score =  118 bits (285), Expect = 3e-27
 Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 4/161 (2%)

Query: 69   CERAILAPTNEMVGQINEQIMSRVEGDIVEFLSVDTVMDTEQVTS--YPVEFLNSLELSG 126
            C+  IL P N  V Q+N+ + +R+ G+   +LS D V+   Q  +  YP EFLN +  S 
Sbjct: 1263 CDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFLNKMSPSS 1322

Query: 127  VPSHKLRLKVGVPVLLMRNLD-APRLCNGTRLQVTHLGRNIVKAIIMTGMAKGENVLIPR 185
            +P H L+LK G  ++L+RNLD +  LCNG+R  V  L  + +     TG  KG   +IPR
Sbjct: 1323 LPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLGCRFATGERKGHFTIIPR 1382

Query: 186  IPII-PTDLPFQFKRLQFPLKIAFAMTINKAQGQTLKVAGI 225
            I      ++ FQ +R QFP++++FA++INKAQGQ+    G+
Sbjct: 1383 IDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGL 1423


>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
            protein Y16E11A.2 protein.
          Length = 1466

 Score =  118 bits (285), Expect = 3e-27
 Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 4/161 (2%)

Query: 69   CERAILAPTNEMVGQINEQIMSRVEGDIVEFLSVDTVMDTEQVTS--YPVEFLNSLELSG 126
            C+  IL P N  V Q+N+ + +R+ G+   +LS D V+   Q  +  YP EFLN +  S 
Sbjct: 1263 CDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFLNKMSPSS 1322

Query: 127  VPSHKLRLKVGVPVLLMRNLD-APRLCNGTRLQVTHLGRNIVKAIIMTGMAKGENVLIPR 185
            +P H L+LK G  ++L+RNLD +  LCNG+R  V  L  + +     TG  KG   +IPR
Sbjct: 1323 LPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLGCRFATGERKGHFTIIPR 1382

Query: 186  IPII-PTDLPFQFKRLQFPLKIAFAMTINKAQGQTLKVAGI 225
            I      ++ FQ +R QFP++++FA++INKAQGQ+    G+
Sbjct: 1383 IDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGL 1423


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
            protein Y46B2A.2 protein.
          Length = 1365

 Score =  118 bits (285), Expect = 3e-27
 Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 4/161 (2%)

Query: 69   CERAILAPTNEMVGQINEQIMSRVEGDIVEFLSVDTVMDTEQVTS--YPVEFLNSLELSG 126
            C+  IL P N  V Q+N+ + +R+ G+   +LS D V+   Q  +  YP EFLN +  S 
Sbjct: 1162 CDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFLNKMSPSS 1221

Query: 127  VPSHKLRLKVGVPVLLMRNLD-APRLCNGTRLQVTHLGRNIVKAIIMTGMAKGENVLIPR 185
            +P H L+LK G  ++L+RNLD +  LCNG+R  V  L  + +     TG  KG   +IPR
Sbjct: 1222 LPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLGCRFATGERKGHFTIIPR 1281

Query: 186  IPII-PTDLPFQFKRLQFPLKIAFAMTINKAQGQTLKVAGI 225
            I      ++ FQ +R QFP++++FA++INKAQGQ+    G+
Sbjct: 1282 IDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGL 1322


>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
            protein F59H6.5 protein.
          Length = 1486

 Score =  118 bits (285), Expect = 3e-27
 Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 4/161 (2%)

Query: 69   CERAILAPTNEMVGQINEQIMSRVEGDIVEFLSVDTVMDTEQVTS--YPVEFLNSLELSG 126
            C+  IL P N  V Q+N+ + +R+ G+   +LS D V+   Q  +  YP EFLN +  S 
Sbjct: 1283 CDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFLNKMSPSS 1342

Query: 127  VPSHKLRLKVGVPVLLMRNLD-APRLCNGTRLQVTHLGRNIVKAIIMTGMAKGENVLIPR 185
            +P H L+LK G  ++L+RNLD +  LCNG+R  V  L  + +     TG  KG   +IPR
Sbjct: 1343 LPPHILKLKKGSVIILLRNLDVSAGLCNGSRFIVETLASHSLGCRFATGERKGHFTIIPR 1402

Query: 186  IPII-PTDLPFQFKRLQFPLKIAFAMTINKAQGQTLKVAGI 225
            I      ++ FQ +R QFP++++FA++INKAQGQ+    G+
Sbjct: 1403 IDCYDDKNISFQLRRTQFPVRLSFALSINKAQGQSFSKIGL 1443


>AC024751-9|AAK21508.2|  677|Caenorhabditis elegans Pif1p dna
           helicase (yeast) homologprotein 1 protein.
          Length = 677

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 10/144 (6%)

Query: 93  EGDIVEFLSVDTVM-DTEQVTSYPVE-FLNSLELSGVPSHKLRLKVGVPVLLMRNLDAPR 150
           + D +   S++T   D +   +Y  E F    +   +   KL LKVG  V+L++N+D  +
Sbjct: 469 DADRINSSSIETTQGDAKTFHAYDDESFDTHAKARTLAQKKLVLKVGAQVMLIKNIDVIK 528

Query: 151 -LCNGTRLQVTHLGRNIVKAIIMTGMAKGENVLIPR----IPIIPTDLPFQFKRLQFPLK 205
            LCNG+R  V     N    I     A   ++ I R    + I  +D P    R Q PL+
Sbjct: 529 GLCNGSRGFVEKFSENGNPMIRFVSQADA-SIEIRRSKFSVRIPGSDAPLI--RRQLPLQ 585

Query: 206 IAFAMTINKAQGQTLKVAGINLEK 229
           +A+A++I+K+QG TL  A I+LE+
Sbjct: 586 LAWAISIHKSQGMTLDCAEISLER 609


>AB015041-1|BAA28677.1|  677|Caenorhabditis elegans PIF1 protein.
          Length = 677

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 10/144 (6%)

Query: 93  EGDIVEFLSVDTVM-DTEQVTSYPVE-FLNSLELSGVPSHKLRLKVGVPVLLMRNLDAPR 150
           + D +   S++T   D +   +Y  E F    +   +   KL LKVG  V+L++N+D  +
Sbjct: 469 DADRINSSSIETTQGDAKTFHAYDDESFDTHAKARTLAQKKLVLKVGAQVMLIKNIDVIK 528

Query: 151 -LCNGTRLQVTHLGRNIVKAIIMTGMAKGENVLIPR----IPIIPTDLPFQFKRLQFPLK 205
            LCNG+R  V     N    I     A   ++ I R    + I  +D P    R Q PL+
Sbjct: 529 GLCNGSRGFVEKFSENGNPMIRFVSQADA-SIEIRRSKFSVRIPGSDAPLI--RRQLPLQ 585

Query: 206 IAFAMTINKAQGQTLKVAGINLEK 229
           +A+A++I+K+QG TL  A I+LE+
Sbjct: 586 LAWAISIHKSQGMTLDCAEISLER 609


>Z81499-1|CAB04087.1|  471|Caenorhabditis elegans Hypothetical
           protein F11C3.1 protein.
          Length = 471

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 15/190 (7%)

Query: 42  NVVHNPDDLNNFVYSELLTNMRNRDWLCERAILAPTNEMVGQINEQIMSRVEG-DIVEFL 100
           NVV + D+L +F +  L T + N + +    IL P    V  IN +IM +++G D+V   
Sbjct: 248 NVVSSLDELIDFTFGPLYTEIPNLNGI----ILTPKKADVEYINLKIMDQIKGKDLVFEA 303

Query: 101 SVDTVMDTEQVTSYPV----EFLNSLELSGVPSHKLRLKVGVPVLLMRNLDAPRLCNGTR 156
            ++T +    ++ + +    EFL +     V S   + + G  V L    +   L  GTR
Sbjct: 304 KLNTRIIRSDLSLHSMTLSFEFLYARLSFSVDS---KHEKGCIVALDEPFEG--LQKGTR 358

Query: 157 LQVTHL-GRNIVKAIIMTGMAKGENVLIPRIPIIPTDLPFQFKRLQFPLKIAFAMTINKA 215
           L    L G ++   +I TG     + +   I         Q   LQFP+ + FA TI+ +
Sbjct: 359 LLFEDLNGNHLCCKVIETGKDVDISRVKRLIGSSGKSNNTQQSVLQFPVSLNFASTIHGS 418

Query: 216 QGQTLKVAGI 225
           QG++ +  G+
Sbjct: 419 QGKSFEKLGL 428


>AF003387-3|AAM22047.1|   62|Caenorhabditis elegans Hypothetical
           protein C44B11.6 protein.
          Length = 62

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)

Query: 197 FKRLQFPLKIAFAMTIN 213
           F RLQ+PL++A+A TIN
Sbjct: 43  FTRLQYPLRLAYACTIN 59


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
            protein ZC132.5 protein.
          Length = 1277

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 155  TRLQVTHLGRNIVKAIIMTGMAKGENVLIPRIPIIPTDLPFQFKRLQFPLKIAFAMTINK 214
            +R Q   +GR + K + ++  A   +  +   PI  T L F+  +   PLK+A  +T+ K
Sbjct: 1215 SRSQTWDIGRTMPKLLFLSLFALLISPSMATAPIECTQLAFESTKNSIPLKLAVQITVLK 1274


>Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical
           protein F44F4.4 protein.
          Length = 890

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 43  VVHNPDDLNNFVYSELLTNMRNRDWLCERAILAPTNEM----VGQINEQIMSRVEGDIVE 98
           +V+NP DL N    E L  ++ +      AI AP+ +       Q        +E DI E
Sbjct: 533 IVNNPGDLTNDSNVERLVELKEKLEHMPNAIGAPSTKFFLDDFVQYRSSFAEEIEMDIAE 592

Query: 99  FLSVDTVMDTEQVTSYP 115
             S     D EQ   +P
Sbjct: 593 DDSESEKSDIEQFLEWP 609


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform a protein.
          Length = 1212

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 95  DIVEFLSVDTVMDTEQVTSYPVEFLNS-LELSGVPSHKLRLKVGVPVLLMRNLDA 148
           D   FL  D   + E++ S   + L + L+LSGV   + RL+ GVP  L    DA
Sbjct: 775 DSYRFLMEDATSEREKMLSEKADELETNLKLSGVTGIEDRLQDGVPDTLRALRDA 829


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform b protein.
          Length = 1454

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 95  DIVEFLSVDTVMDTEQVTSYPVEFLNS-LELSGVPSHKLRLKVGVPVLLMRNLDA 148
           D   FL  D   + E++ S   + L + L+LSGV   + RL+ GVP  L    DA
Sbjct: 775 DSYRFLMEDATSEREKMLSEKADELETNLKLSGVTGIEDRLQDGVPDTLRALRDA 829


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.137    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,437,177
Number of Sequences: 27539
Number of extensions: 217805
Number of successful extensions: 533
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 13
length of query: 240
length of database: 12,573,161
effective HSP length: 79
effective length of query: 161
effective length of database: 10,397,580
effective search space: 1674010380
effective search space used: 1674010380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)