Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001821-TA|BGIBMGA001821-PA|undefined
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   1.0  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   4.1  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   9.5  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 25  SQFTNLSDVRIKATTLGATVRGANCITESNDGDANTALQPSNVTTVITQI 74
           +++T + DV++K   L  +  GA  ++ +     + A  P+N T + T I
Sbjct: 184 TEYTTVWDVKLKRQVLNLSYLGAAGVSAATGAVNSIAWHPNNATRLATAI 233


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 46  GANCITESNDGDANTAL-QPSNVTTVITQIXXXXXXXXXXXXXXXXXGPLTPVDGAAKP 103
           G   +TES+D  A+TAL   S  + V+T                    PL  +D    P
Sbjct: 66  GLASVTESSDDGASTALPTTSTESVVVTTSAPAASSSATSYPATFVSTPLYTMDNVTAP 124


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 35  IKATTLGATVRGANCITESNDGDANTALQPSNVTT 69
           ++   L +  R   C+ + +DGDA    +   +TT
Sbjct: 82  VRTVALLSHARNIQCLIQESDGDAKDVARSIYITT 116


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,208
Number of Sequences: 5004
Number of extensions: 11653
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 3
length of query: 161
length of database: 2,362,478
effective HSP length: 68
effective length of query: 93
effective length of database: 2,022,206
effective search space: 188065158
effective search space used: 188065158
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 50 (24.2 bits)