Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001821-TA|BGIBMGA001821-PA|undefined
         (161 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)                27   5.6  
SB_57394| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  

>SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
          Length = 1139

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 5   PETKILIYVEINAHTKSKQFSQFTNLSDVRIKATTLGATVRGANCITESNDGDANTALQP 64
           P T  +    +N HT S   S     + +     T   T    NC T  N G  ++  +P
Sbjct: 421 PITTTITNHRLNCHTNSVILSSRKRPAPITTTPITTTITNHRLNCHT--NSGILSSRKRP 478

Query: 65  SNVTTVIT 72
           + +TT IT
Sbjct: 479 APITTTIT 486



 Score = 27.5 bits (58), Expect = 5.6
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 5   PETKILIYVEINAHTKSKQFSQFTNLSDVRIKATTLGATVRGANCITESNDGDANTALQP 64
           P T  +    +N HT S   S     + +     T   T    NC T  N G  ++  +P
Sbjct: 569 PITTTITNHRLNCHTNSVILSSRKRPAPITTTPITTTITNHRLNCHT--NSGILSSRKRP 626

Query: 65  SNVTTVIT 72
           + +TT IT
Sbjct: 627 APITTTIT 634


>SB_57394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 19  TKSKQFSQFTNLSDVRIKATTLGATVRGANCITESNDGDANTALQPSNVTT 69
           T+S   +Q TN++  +    T GA+       T +N+ +   +L PS +T+
Sbjct: 131 TQSSNVTQSTNVTQAKYVTPTSGASFFAGPVTTLANERNDQRSLIPSAITS 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.309    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,302
Number of Sequences: 59808
Number of extensions: 86239
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 6
length of query: 161
length of database: 16,821,457
effective HSP length: 77
effective length of query: 84
effective length of database: 12,216,241
effective search space: 1026164244
effective search space used: 1026164244
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 56 (26.6 bits)