GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001821-TA|BGIBMGA001821-PA|undefined
         (161 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2QBQ3 Cluster: Similar lenght is not described. precur...    33   3.1  
UniRef50_Q2N0B9 Cluster: Elicitin-like protein RAL2C; n=5; Phyto...    31   9.4  
UniRef50_P49455 Cluster: Tropomyosin-1, isoforms 33/34; n=219; B...    31   9.4  

>UniRef50_A2QBQ3 Cluster: Similar lenght is not described.
           precursor; n=1; Aspergillus niger|Rep: Similar lenght is
           not described. precursor - Aspergillus niger
          Length = 739

 Score = 33.1 bits (72), Expect = 3.1
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 31  SDVRIKATTLGATVRGANCITESNDGDANTALQPSNVTTVITQIXXXXXXXXXXXXXXXX 90
           S+ +  A ++ ++V GA+     ND  ++ A   SNV+    Q                 
Sbjct: 546 SEAKTVAPSIPSSVTGASAEANGNDSASSNAATASNVSGASAQAGDNESTPASAGANAGS 605

Query: 91  XGPLTPVDGAAKPANEAAGSA--DSGAQ 116
               + V GA+  AN + GS+   SG+Q
Sbjct: 606 SAAPSSVSGASAEANGSEGSSSHSSGSQ 633


>UniRef50_Q2N0B9 Cluster: Elicitin-like protein RAL2C; n=5;
           Phytophthora|Rep: Elicitin-like protein RAL2C -
           Phytophthora ramorum (Sudden oak death agent)
          Length = 343

 Score = 31.5 bits (68), Expect = 9.4
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 37  ATTLGATVRGANCITESNDGDANTALQPSNVTTVITQIXXXXXXXXXXXXXXXXXGPLTP 96
           ATT G+T         S  G+A  +   SN  TV +                    P + 
Sbjct: 240 ATTAGSTATDNTVSASSTAGNATASSSSSNTVTVPSS-ASSATTSTASSGETSTSAPSSG 298

Query: 97  VDGAAKPANEAAGSADSGAQPA 118
              A+  A+ +A S+ SG+  A
Sbjct: 299 TSAASAAASASAASSSSGSSAA 320


>UniRef50_P49455 Cluster: Tropomyosin-1, isoforms 33/34; n=219;
           Bilateria|Rep: Tropomyosin-1, isoforms 33/34 -
           Drosophila melanogaster (Fruit fly)
          Length = 518

 Score = 31.5 bits (68), Expect = 9.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 92  GPLTPVDGAAKPANEAAGSADSGAQPAN 119
           G + P DGAA PA  AA +A+  A PA+
Sbjct: 432 GAVPPADGAAPPAEGAAPAAEGAAPPAD 459


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.309    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,663,420
Number of Sequences: 1657284
Number of extensions: 2947446
Number of successful extensions: 6378
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6370
Number of HSP's gapped (non-prelim): 9
length of query: 161
length of database: 575,637,011
effective HSP length: 94
effective length of query: 67
effective length of database: 419,852,315
effective search space: 28130105105
effective search space used: 28130105105
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 68 (31.5 bits)