GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001821-TA|BGIBMGA001821-PA|undefined
         (161 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    27   9.5  

>10_08_0608 + 19184722-19185224,19185331-19185410,19186048-19186235,
            19187021-19187927,19188015-19188142,19189270-19189356,
            19189422-19189472,19189582-19189668,19189746-19189873,
            19190469-19190608,19190721-19190882,19190964-19192733,
            19192807-19192922,19193077-19193227,19193243-19193371,
            19193598-19194139
          Length = 1722

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 7    TKILIYVEINAHTKSKQFSQFTNLSDVRIKATTLGATVRGAN 48
            T+IL+  E  + T++    Q    ++  I ATT+  T+R AN
Sbjct: 1613 TQILLAGETLSETRAGIHPQAMRAAEAAILATTMTGTIRAAN 1654


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,469
Number of Sequences: 37544
Number of extensions: 75534
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 1
length of query: 161
length of database: 14,793,348
effective HSP length: 77
effective length of query: 84
effective length of database: 11,902,460
effective search space: 999806640
effective search space used: 999806640
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 56 (26.6 bits)