GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001821-TA|BGIBMGA001821-PA|undefined
         (161 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X76208-1|CAA53800.1|  518|Drosophila melanogaster protein 33-spe...    31   0.57 
K02621-1|AAA28968.1|  531|Drosophila melanogaster protein ( D.me...    31   0.57 
AE014297-1995|AAS65155.1|  518|Drosophila melanogaster CG4898-PK...    31   0.57 
AF371282-1|AAK54736.1|  598|Drosophila melanogaster voltage-depe...    27   9.2  
AE014298-846|AAF46127.2| 2893|Drosophila melanogaster CG15899-PB...    27   9.2  

>X76208-1|CAA53800.1|  518|Drosophila melanogaster protein
           33-specific exons protein.
          Length = 518

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 92  GPLTPVDGAAKPANEAAGSADSGAQPAN 119
           G + P DGAA PA  AA +A+  A PA+
Sbjct: 432 GAVPPADGAAPPAEGAAPAAEGAAPPAD 459



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 92  GPLTPVDGAAKPANEAAGSADSGAQPANE 120
           G   P DGAA PA  AA  AD+ A PA E
Sbjct: 453 GAAPPADGAAPPAEAAAAPADAAA-PAAE 480



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 92  GPLTPVDGAAKPANEAAGSADSGAQPA 118
           G   P +GAA PA  A   AD  A PA
Sbjct: 418 GAAPPAEGAAPPAEGAVPPADGAAPPA 444


>K02621-1|AAA28968.1|  531|Drosophila melanogaster protein (
           D.melanogaster tropomyosingene isoform 33 (9C), exon
           10C. ).
          Length = 531

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 92  GPLTPVDGAAKPANEAAGSADSGAQPAN 119
           G + P DGAA PA  AA +A+  A PA+
Sbjct: 445 GAVPPADGAAPPAEGAAPAAEGAAPPAD 472



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 92  GPLTPVDGAAKPANEAAGSADSGAQPANE 120
           G   P DGAA PA  AA  AD+ A PA E
Sbjct: 466 GAAPPADGAAPPAEAAAAPADAAA-PAAE 493



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 92  GPLTPVDGAAKPANEAAGSADSGAQPA 118
           G   P +GAA PA  A   AD  A PA
Sbjct: 431 GAAPPAEGAAPPAEGAVPPADGAAPPA 457


>AE014297-1995|AAS65155.1|  518|Drosophila melanogaster CG4898-PK,
           isoform K protein.
          Length = 518

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 92  GPLTPVDGAAKPANEAAGSADSGAQPAN 119
           G + P DGAA PA  AA +A+  A PA+
Sbjct: 432 GAVPPADGAAPPAEGAAPAAEGAAPPAD 459



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 92  GPLTPVDGAAKPANEAAGSADSGAQPANE 120
           G   P DGAA PA  AA  AD+ A PA E
Sbjct: 453 GAAPPADGAAPPAEAAAAPADAAA-PAAE 480



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 92  GPLTPVDGAAKPANEAAGSADSGAQPA 118
           G   P +GAA PA  A   AD  A PA
Sbjct: 418 GAAPPAEGAAPPAEGAVPPADGAAPPA 444


>AF371282-1|AAK54736.1|  598|Drosophila melanogaster
           voltage-dependent calcium channelalpha13 subunit
           protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 38  TTLGATVRGANCITESNDGDANTALQPSNVTTVI 71
           TT GA   GA  +  S  GD    LQPS V+ V+
Sbjct: 433 TTPGA--EGATVMVASTAGDTGQTLQPSTVSAVV 464


>AE014298-846|AAF46127.2| 2893|Drosophila melanogaster CG15899-PB
           protein.
          Length = 2893

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 38  TTLGATVRGANCITESNDGDANTALQPSNVTTVI 71
           TT GA   GA  +  S  GD    LQPS V+ V+
Sbjct: 791 TTPGA--EGATVMVASTAGDTGQTLQPSTVSAVV 822


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.309    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,847,389
Number of Sequences: 52641
Number of extensions: 136245
Number of successful extensions: 323
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 23
length of query: 161
length of database: 24,830,863
effective HSP length: 79
effective length of query: 82
effective length of database: 20,672,224
effective search space: 1695122368
effective search space used: 1695122368
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 58 (27.5 bits)