GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001821-TA|BGIBMGA001821-PA|undefined
         (161 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024794-7|AAK68501.3|  279|Caenorhabditis elegans Hypothetical ...    30   0.91 
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    28   2.8  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF025472-1|AAY43980.1|  832|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AC024794-7|AAK68501.3|  279|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.9 protein.
          Length = 279

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 29  NLSDVRIKATTLGATVRGANCITESNDGDANTAL 62
           N  +V IK+ T G+ V GA+ +T+ + GDA  A+
Sbjct: 110 NFVNVEIKSLTKGSVVVGADVLTKKSLGDAQMAV 143


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
            protein H02F09.3 protein.
          Length = 1275

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 15   INAHTKSKQFSQFTNLSDVRIKATTLGATVRGANCITESNDGDANTALQPSNVTTVIT 72
            I+  T S + S  +  +     +T+ G+TV G++  T S +   +++ QP + +T +T
Sbjct: 1208 ISGSTGSTESSTMSAGTGSTETSTSGGSTVSGSSLSTSSTESSGSSSTQPPSTSTELT 1265


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 9   ILIYVEINAHTKSKQFSQFTNLSDVRIKATTLGATVRGANCITESN 54
           I I   I + T  +Q+  F  L +   K+T +GA++ G      SN
Sbjct: 232 IEILTRILSKTSDQQWENFIGLLETIEKSTDIGASISGLRVSCSSN 277


>Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical
           protein F13E9.4 protein.
          Length = 409

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 12  YVEINAHTKSKQFSQFTNLSDVRIKATTLGATVRGANCITESNDGDANTALQ 63
           Y++   +  +       N+SD+     T+ A++ G    T S++ D  +A Q
Sbjct: 278 YIQYETNRSAIHTQATQNVSDIINNLATVQASIEGIQSNTSSSENDRQSAFQ 329


>AF025472-1|AAY43980.1|  832|Caenorhabditis elegans Hypothetical
           protein ZK250.5b protein.
          Length = 832

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 15  INAHTKSKQFSQFTNLSDVRIKATTLGATVRGANCITESNDGDANTALQ 63
           I AH K  + S  T ++   +K   L  TVR  + I E +    NT ++
Sbjct: 56  IEAHVKIIKISNITCIARKNLKTFMLNKTVRNVSNIREGSRYHTNTEVR 104


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.309    0.124    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,289
Number of Sequences: 27539
Number of extensions: 64728
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 5
length of query: 161
length of database: 12,573,161
effective HSP length: 76
effective length of query: 85
effective length of database: 10,480,197
effective search space: 890816745
effective search space used: 890816745
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 56 (26.6 bits)