Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001819-TA|BGIBMGA001819-PA|undefined
         (188 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74120.1 68414.m08584 mitochondrial transcription termination...    32   0.21 
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot...    31   0.64 
At1g63240.1 68414.m07148 expressed protein                             29   1.9  
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica...    29   2.6  
At1g63300.1 68414.m07156 expressed protein similar to Intracellu...    27   5.9  
At4g35870.1 68417.m05094 expressed protein                             27   7.9  

>At1g74120.1 68414.m08584 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 445

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 46  NSGPLDSLIFVGILRIAICSKEKKLTTLLRDSPNICHPEFGTKW 89
           NS  +++ I +GIL +++   +K L +L+ D PN+   EF  KW
Sbjct: 70  NSDLVETEISLGIL-LSLKIPQKSLVSLISDCPNVLRSEFLRKW 112


>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 813

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 65  SKEKKLTTLLRDSPNICHPEFGTKWGWSKLT-GKFESYKEIIKFYKLEKIREELDTLLKR 123
           S  KK +     S      + GT  GW++ T GKFES KE +       + ++ DTLL++
Sbjct: 127 SNSKKPSDFAVGSGKKVRHQNGTSRGWNRGTSGKFESSKETMTSTPNITLMKQCDTLLRK 186


>At1g63240.1 68414.m07148 expressed protein
          Length = 548

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)

Query: 95  TGKFESYKE-IIKFYKLEKIREELDTLLKRSK 125
           TGK  S K+ ++++ K+EKIRE+ +  +KR+K
Sbjct: 43  TGKKLSTKDQVLEYIKMEKIREKREAGIKRNK 74


>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 862

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 93  KLTGKF---ESYKEIIKFYKLEKIREELDTLLKRSKDGEK---WEKTEGSSKFIITTVRS 146
           KL GK    E  +E+IK       +E L  LL R K GE    WE+ +G     +T  RS
Sbjct: 193 KLMGKLVAAEPPREVIKSELFAHQKEGLGWLLHREKSGELPPFWEEKDGEFLNTLTNYRS 252


>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]; similar to Myosin II heavy
           chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
           discoideum]
          Length = 1029

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 110 LEKIREELDTLLKRSKDGE-KWEKTEGSSKFIITTVRSLIELLE 152
           LE+ REELD    R+ +   + EKT+ S+  +I  V+ L E+LE
Sbjct: 376 LEETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLE 419


>At4g35870.1 68417.m05094 expressed protein
          Length = 817

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 91  WSKLTGKFESYKEIIKFYKLEKIREELDTLLKRSKDG 127
           WS++T +F  + +  K  KL+++R +L++ L   K+G
Sbjct: 300 WSQITERF-GFTDDEKLRKLQELRADLESQLAAYKEG 335


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,525,663
Number of Sequences: 28952
Number of extensions: 187400
Number of successful extensions: 490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 6
length of query: 188
length of database: 12,070,560
effective HSP length: 77
effective length of query: 111
effective length of database: 9,841,256
effective search space: 1092379416
effective search space used: 1092379416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)