Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001819-TA|BGIBMGA001819-PA|undefined
(188 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 31 0.58
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 31 0.58
06_01_0346 - 2499108-2499348,2499659-2499864,2499970-2500152,250... 30 1.3
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439... 29 1.8
09_04_0443 + 17639639-17639651,17639740-17639841,17639956-176402... 28 5.4
05_01_0475 - 3818121-3820565 28 5.4
03_05_1055 - 29998212-29998388,29998464-29998786,29999066-29999243 28 5.4
12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342... 27 7.1
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 27 7.1
07_03_0034 - 12663290-12663355,12663437-12663566,12663903-126639... 27 7.1
11_06_0760 + 27017956-27018433,27018487-27019234,27023760-270243... 27 9.4
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 27 9.4
>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 84 EFGTKWGWSKLTGKFESYKEIIKFYKLEKIRE-ELDTLLKRSKDGEKWEKTEGSS 137
+F WGWSKL G + K + ++ I E E+D L+ K + G+S
Sbjct: 1643 QFWKPWGWSKLVGYANANKSSKRKLEVTSIEEREVDGLIDSRKSSNRKSLNVGTS 1697
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 31.1 bits (67), Expect = 0.58
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 96 GKFESYKEIIKF------YKLEKIR-EELDTLLKRSKDGEKWEKTEGSSK 138
G F+SY+E + +L K + +ELDTL+KR K K EKT+ S K
Sbjct: 2182 GLFKSYEERLSSNEWQAALRLRKYKSKELDTLMKRLKSSSKSEKTDYSVK 2231
>06_01_0346 -
2499108-2499348,2499659-2499864,2499970-2500152,
2500682-2500819,2501482-2501566,2504910-2504967,
2505360-2505441,2506331-2506462,2506547-2506647,
2507850-2507898
Length = 424
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 18 AGPMPHLKVHKTGPIQGHRKYHAKHGKTNSGPLDSLI 54
A P+PH + + PIQ HRK + N PL +L+
Sbjct: 385 AMPIPHFGMRRDWPIQSHRKPNIGTVPGNKCPLTALV 421
>01_06_1723 -
39443176-39443505,39443615-39443710,39443834-39443902,
39444381-39444443,39444521-39444598,39444725-39444838,
39445727-39445804,39446457-39446522,39446739-39446804,
39446896-39447003,39447355-39447432,39447951-39448010,
39448087-39448191,39448407-39448595,39448922-39448985,
39449244-39449385,39449494-39449654,39449952-39450076,
39450230-39450300,39450410-39450560,39450713-39450769,
39451049-39451143,39451331-39451379
Length = 804
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 98 FESYKEIIKFYKLEKIREELDTLLKRSKDGEKWEKTEGSSKFIITTVRSLIELLEPFFSN 157
FE Y + + + + ++LD L++ EKWE EGS +I+++ + ++ +
Sbjct: 379 FEPYMSVYIELEEKSLVDQLDKLIQE----EKWETEEGSQTYILSSSMQVFLIIRRSLNR 434
Query: 158 GHVCLCTVLFVGLTQFIVNQLRKKVL 183
C+ L T F + Q+ ++VL
Sbjct: 435 -----CSALTKNETLFNLFQVFQRVL 455
>09_04_0443 +
17639639-17639651,17639740-17639841,17639956-17640230,
17640338-17640522,17641506-17641578,17641699-17641704
Length = 217
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 31 PIQGHRKYHAKHGKTNSGPLDSLIFVGILRIAICS 65
P + RK +A + T++GP+ ++++ R+A CS
Sbjct: 77 PDEQLRKSYACYLSTSAGPVMGILYLSTARVAFCS 111
>05_01_0475 - 3818121-3820565
Length = 814
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 86 GTKWGWSKLTG---KFESYKEIIK----FYKLEKIREELDTLLKRSKDGEKWE-KTEGSS 137
G K+GW+K+TG +F S K +I Y +E +D L + + W +E SS
Sbjct: 171 GAKFGWNKVTGFTRRFTSKKNLIDPGLGLYYVELDNTGID-LSRSNPPNMYWSWSSEKSS 229
Query: 138 KFIITTVRSLIEL 150
+I+ + LI +
Sbjct: 230 SALISLLNQLINI 242
>03_05_1055 - 29998212-29998388,29998464-29998786,29999066-29999243
Length = 225
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 36 RKYHAKHGKTNSGPLDSLIFVGILRIAICS 65
RK +A + T+SGP+ +++ R+A CS
Sbjct: 103 RKAYACYLSTSSGPVIGTLYISTARLAFCS 132
>12_02_0356 +
17915029-17916236,17932970-17933283,17933936-17934244,
17934613-17935439
Length = 885
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 65 SKEKKLTTL-LRDSPNICHPEFGTKWGWSKLTGKFESYKEIIKFYKLEKIREEL 117
SK+KK+ + ++++P++ P G SK+T +S + + +++L + EEL
Sbjct: 326 SKKKKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDVSYHELVSMFEEL 379
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 110 LEKIREELDTLLKRSKDGEKWEKTEGSSKFII--TTVRSLIELL 151
L+++ EE+ +L K+S D W+ + + ++ T V+ ++LL
Sbjct: 174 LDQLEEEIASLEKKSADSSLWDDPSKAQEILVALTEVKDRVKLL 217
>07_03_0034 -
12663290-12663355,12663437-12663566,12663903-12663990,
12664106-12664178,12666144-12666248,12667610-12667732,
12667821-12667897,12668877-12669006
Length = 263
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 46 NSGPLDSLIFVGILRIAICSKEKKLTTLLRDSPNICHPEFGTK 88
+S P+ L+ +G++ +CS E NI EF TK
Sbjct: 189 SSDPIGDLLIIGVIGFMLCSTEGPTVDFQHPIFNIEDNEFSTK 231
>11_06_0760 +
27017956-27018433,27018487-27019234,27023760-27024378,
27030755-27032440
Length = 1176
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 103 EIIKFYKLEKIREELDTLLKRSKDGEKWEKTEGSSK 138
++++ K EK+ E+++ + SKDGE+ E +G K
Sbjct: 464 DVLRGKKPEKLFNEVESESRISKDGERKEIDDGEQK 499
>07_03_1723 -
29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 93 KLTGKFESYKEIIK-FYKLEKIREELDTLLKR-SKDG 127
KL F++ +++ K FY + + +ELDTLL KDG
Sbjct: 707 KLGAMFDTEQDLSKKFYSINDMTKELDTLLSYIEKDG 743
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.140 0.430
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,310,891
Number of Sequences: 37544
Number of extensions: 206969
Number of successful extensions: 524
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 14
length of query: 188
length of database: 14,793,348
effective HSP length: 78
effective length of query: 110
effective length of database: 11,864,916
effective search space: 1305140760
effective search space used: 1305140760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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