GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001819-TA|BGIBMGA001819-PA|undefined
         (188 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U28928-8|AAA68340.1|  661|Caenorhabditis elegans Peroxisomal mem...    29   1.6  
Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z79755-12|CAB02114.1|  819|Caenorhabditis elegans Hypothetical p...    28   3.6  
Z30423-8|CAA83011.1|  129|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF099919-8|AAC68800.1|  488|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z77657-4|CAB01149.1|  347|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z49937-1|CAA90184.2|  670|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AL132898-20|CAC14418.2|  617|Caenorhabditis elegans Hypothetical...    27   8.3  
AL132863-10|CAC15862.2|  617|Caenorhabditis elegans Hypothetical...    27   8.3  
AF160189-1|AAD45355.1|  617|Caenorhabditis elegans putative seri...    27   8.3  

>U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical
           protein F25E2.1 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 9/54 (16%)

Query: 143 TVRSLIELLEPFFSNGHVCLCTVLFVGLTQF--------IVNQLRKKVLFCNDT 188
           T+ S++ L EP  +NGHV + T L++ L+ F        ++ Q RK  L C  T
Sbjct: 251 TLSSVLLLSEPI-TNGHVIITTQLWLALSPFLDAVITIIVIKQYRKNCLTCAST 303


>U28928-8|AAA68340.1|  661|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 2 protein.
          Length = 661

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 104 IIKFYKLEKIREELDTLLKRSKDGEKWEKTEGSSKFIITTVRSLIELLEPFFS 156
           +IK YK + IR     + K  KDG K +K      F+    R L  L+  FFS
Sbjct: 32  LIKLYK-QDIRGTKHLVAKTKKDGSKGQKAHVDGVFLGKLARILKILIPGFFS 83


>Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 102 KEIIKFYKLEKIREE-LDTLLKRSKDGEKWEKTE 134
           +E  K YK EKIR+E LD ++K+ K  ++ +KT+
Sbjct: 77  EEAEKLYKEEKIRKEALDKIVKKEKLSKEDKKTK 110


>Z79755-12|CAB02114.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 102 KEIIKFYKLEKIREE-LDTLLKRSKDGEKWEKTE 134
           +E  K YK EKIR+E LD ++K+ K  ++ +KT+
Sbjct: 77  EEAEKLYKEEKIRKEALDKIVKKEKLSKEDKKTK 110


>Z30423-8|CAA83011.1|  129|Caenorhabditis elegans Hypothetical
           protein T20G5.10 protein.
          Length = 129

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 113 IREELDTLLKRSKDGEKWEKT-EGSSKFIITTVRSLIELLEP 153
           I E L+  LK   D E W KT E   K I  T+R   E   P
Sbjct: 76  ITEGLNYALKEIGDVENWSKTIENDMKIITETLRRAYEAKNP 117


>AF099919-8|AAC68800.1|  488|Caenorhabditis elegans Hypothetical
           protein F40G9.5 protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 31  PIQGH--RKYHAKHGKTNSGPLDSLIFVGILRIAICSKEKK 69
           P+Q H    Y A+   TN GP D    + ++ +  CS + K
Sbjct: 157 PVQSHAPHTYRAEAQDTNDGPFDKEFEIYMIMVHSCSNDGK 197


>Z77657-4|CAB01149.1|  347|Caenorhabditis elegans Hypothetical
           protein F08H9.5 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 74  LRDSPNICHPEFGTKWGWSKLTGKFESYKEIIKF 107
           L D PN  +P  GT   W  L   FES    + F
Sbjct: 214 LFDGPNTTYPFLGTTDDWWSLRFNFESSSNAVSF 247


>Z49937-1|CAA90184.2|  670|Caenorhabditis elegans Hypothetical
           protein F14F3.2 protein.
          Length = 670

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 111 EKIREELDTLLKRSKDGEKWEKTEGSSKFIITTVRSLIELLEPF 154
           EKI   + TLL+   +G       G +  I   + SLI +L P+
Sbjct: 578 EKITRHIKTLLQHGHNGNLDMNARGGAHDIACAINSLITILLPY 621


>AL132898-20|CAC14418.2|  617|Caenorhabditis elegans Hypothetical
           protein Y59A8B.14 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 86  GTKWGWSKLTGKFESYKEIIKFYKLEKIREELDTLLKRSKDGEKWEKTEGSSKFI-ITTV 144
           G  WG    TG +   KE I  Y L +   ++    K  K    WE        +     
Sbjct: 182 GYMWGGQIGTGSYGKVKECIDMYTLTRRAVKIMKYDKLRKITNGWENIRSEMSILRRMNH 241

Query: 145 RSLIELLEPF 154
           R++I+L+E F
Sbjct: 242 RNVIKLIEIF 251


>AL132863-10|CAC15862.2|  617|Caenorhabditis elegans Hypothetical
           protein Y59A8B.14 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 86  GTKWGWSKLTGKFESYKEIIKFYKLEKIREELDTLLKRSKDGEKWEKTEGSSKFI-ITTV 144
           G  WG    TG +   KE I  Y L +   ++    K  K    WE        +     
Sbjct: 182 GYMWGGQIGTGSYGKVKECIDMYTLTRRAVKIMKYDKLRKITNGWENIRSEMSILRRMNH 241

Query: 145 RSLIELLEPF 154
           R++I+L+E F
Sbjct: 242 RNVIKLIEIF 251


>AF160189-1|AAD45355.1|  617|Caenorhabditis elegans putative
           serine-threonine kinasePAR-4 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 86  GTKWGWSKLTGKFESYKEIIKFYKLEKIREELDTLLKRSKDGEKWEKTEGSSKFI-ITTV 144
           G  WG    TG +   KE I  Y L +   ++    K  K    WE        +     
Sbjct: 182 GYMWGGQIGTGSYGKVKECIDMYTLTRRAVKIMKYDKLRKITNGWENIRSEMSILRRMNH 241

Query: 145 RSLIELLEPF 154
           R++I+L+E F
Sbjct: 242 RNVIKLIEIF 251


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.140    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,712,751
Number of Sequences: 27539
Number of extensions: 195328
Number of successful extensions: 653
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 11
length of query: 188
length of database: 12,573,161
effective HSP length: 77
effective length of query: 111
effective length of database: 10,452,658
effective search space: 1160245038
effective search space used: 1160245038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)