Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001818-TA|BGIBMGA001818-PA|IPR007230|Peptidase S59,
nucleoporin
(1803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 76 3e-13
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa... 75 3e-13
At1g80680.1 68414.m09467 nucleoporin family protein contains Pfa... 72 3e-12
At3g28840.1 68416.m03598 expressed protein 41 0.009
At3g07560.1 68416.m00903 glycine-rich protein 38 0.062
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 36 0.33
At2g28670.1 68415.m03485 disease resistance-responsive family pr... 36 0.33
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 35 0.44
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 35 0.58
At4g01985.1 68417.m00265 expressed protein 34 0.76
At5g53150.1 68418.m06607 DNAJ heat shock N-terminal domain-conta... 34 1.0
At4g15150.1 68417.m02326 glycine-rich protein 34 1.0
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 33 1.3
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 33 2.3
At4g30460.1 68417.m04325 glycine-rich protein 32 4.1
At1g54450.1 68414.m06211 calcium-binding EF-hand family protein ... 32 4.1
At5g53440.1 68418.m06641 expressed protein 31 5.4
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 31 5.4
At5g15430.1 68418.m01806 calmodulin-binding protein-related has ... 31 7.1
At1g73590.1 68414.m08519 auxin efflux carrier protein, putative ... 31 7.1
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 31 7.1
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 31 9.4
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 31 9.4
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 31 9.4
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 31 9.4
At2g47220.1 68415.m05897 3' exoribonuclease family domain 1 prot... 31 9.4
At1g19990.1 68414.m02504 expressed protein ; expression supporte... 31 9.4
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 75.8 bits (178), Expect = 3e-13
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 864 KLTRPGYYTIPSLDDMINYMRPD-GTCP-VPHLTIGRKNYGNVYYDSEIDVAGLDLDALV 921
KL + Y+T P + ++ R D G C V +GR YG++ + E DV LDL++LV
Sbjct: 882 KLRQSDYFTEPRIQELAAKERADPGYCRRVRDFVVGRHGYGSIKFMGETDVRRLDLESLV 941
Query: 922 HFLNKEVIVYPEDSDKPPVGVGLNRRAIVTLDRVWPRDKTEKRLITE 968
F +EVIVY ++S KP VG GLN+ A VTL + DK + TE
Sbjct: 942 QFNTREVIVYMDESKKPAVGQGLNKPAEVTLLNIKCIDKKTGKQFTE 988
Score = 64.9 bits (151), Expect = 5e-10
Identities = 85/323 (26%), Positives = 111/323 (34%), Gaps = 31/323 (9%)
Query: 50 GATTSSPFGGFK-PATGSFGASTSTQPATGGGLF-ANNTSGGGLFGNPGPXXXXXXXXXX 107
GAT + FG PA GS G + GG F A+NT G G P
Sbjct: 195 GATNTPAFGASPTPAFGSTGTTFGNTGFGSGGAFGASNTPAFGASGTPAFGASGTPAFGA 254
Query: 108 XXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXXXXXXXXXXXXXXXXXXXX 167
+T GG +TPSFG
Sbjct: 255 SSTPAFGASSTPAFGASSTPAFGGS------STPSFGASNTSSFSFGSSPAFGQSTSAFG 308
Query: 168 XPATGPGAGLFA-PQGNTMS-GGGLFGGNTSAGAFGQQQPTGTGHVKFNPVVGTEVVMKN 225
A G F Q +T + GG FG +T FG QQ G+ V + P V +
Sbjct: 309 SSAFGSTPSPFGGAQASTPTFGGSGFGQST----FGGQQG-GSRAVPYAPTVEADT---- 359
Query: 226 GTSQNINIKHHCITFMKEYEGKSLEELRLEDYMAGRKG----SXXXXXXXXXXXXXXENK 281
GT K I+ M Y+ K+ EELR EDY G KG + +
Sbjct: 360 GTGTQPAGKLESISAMPAYKEKNYEELRWEDYQRGDKGGPLPAGQSPGNAGFGISPSQPN 419
Query: 282 PXXXXXXXXXXXXXXXXXXXXXXXANKPPAFGTSTAGSTLFNTTTTQ--APAFG--ASTN 337
P N P A T T S+ F T T+ + FG +S+N
Sbjct: 420 PFSPSPAFGQTSANPTNPFSSSTSTN-PFAPQTPTIASSSFGTATSNFGSSPFGVTSSSN 478
Query: 338 TFGFGANTQNQSTGIFGAKPATG 360
FG G++T +T +FG+ A G
Sbjct: 479 LFGSGSST---TTSVFGSSSAFG 498
Score = 34.3 bits (75), Expect = 0.76
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 314 TSTAGSTLFNTTTTQAPAFGASTNTFGFGANTQNQSTGIFGAKPATGA 361
TS GS+ TTT +P FG S++T GFG+ S+ IFG+ P GA
Sbjct: 488 TSVFGSSSAFGTTTPSPLFG-SSSTPGFGS-----SSSIFGSAPGQGA 529
>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 997
Score = 75.4 bits (177), Expect = 3e-13
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 864 KLTRPGYYTIPSLDDMINYMRPD-GTCP-VPHLTIGRKNYGNVYYDSEIDVAGLDLDALV 921
KL Y+T P + ++ R + G C V +GR YG++ + E DV LDL+ +V
Sbjct: 841 KLHHSEYFTEPRIQELAAKERVEQGYCKRVKDFVVGRHGYGSIKFLGETDVCRLDLEMVV 900
Query: 922 HFLNKEVIVYPEDSDKPPVGVGLNRRAIVTLDRVWPRDK 960
F N+EV VY ++S KPPVG GLN+ A+VTL + DK
Sbjct: 901 QFKNREVNVYMDESKKPPVGQGLNKPAVVTLLNIKCMDK 939
Score = 55.2 bits (127), Expect = 4e-07
Identities = 78/331 (23%), Positives = 114/331 (34%), Gaps = 33/331 (9%)
Query: 50 GATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGNPGPXXXXXXXXXXXX 109
GAT ++ FGG +T FGAS++ PA G + NT G P
Sbjct: 181 GATNTTGFGG--SSTPGFGASST--PAFG----STNTPAFGASSTP---LFGSSSSPAFG 229
Query: 110 XXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXXXXXXXXXXXXXXXXXXXXXP 169
N + + GG FG++ +TP+FG
Sbjct: 230 ASPAPAFGSSGNAFGNNTFSSGGAFGSS-STPTFGASNTSAFGASSSPSFNFGSSPAFGQ 288
Query: 170 ATGP-GAGLFAPQ----GNTMSGGGLFGGNTSAGAFGQQQPTG--TGHVKFNPVVGTEVV 222
+T G+ F G+T S G G S FG Q G G + P T
Sbjct: 289 STSAFGSSSFGSTQSSLGSTPSPFGAQGAQASTSTFGGQSTIGGQQGGSRVIPYAPTTDT 348
Query: 223 MKNGTSQNINIKHHCITFMKEYEGKSLEELRLEDYMAGRKGSXXXXXXX--XXXXXXXEN 280
S++ ++ I+ M ++GK++EELR EDY G KG +
Sbjct: 349 ASGTESKSERLQS--ISAMPAHKGKNMEELRWEDYQRGDKGGQRSTGQSPEGAGFGVTNS 406
Query: 281 KPXXXXXXXXXXX-----XXXXXXXXXXXXANKPPAFGTSTAGSTLFNTTTTQAPAFGAS 335
+P N P+F T S TT + +
Sbjct: 407 QPSIFSTSPAFSQTPVNPTNPFSQTTPTSNTNFSPSFSQPTTPSFGQPTTPSFRSTVSNT 466
Query: 336 TNTFGFGAN-TQNQS----TGIFGAKPATGA 361
T+ FG ++ T N S + IFG+ PA G+
Sbjct: 467 TSVFGSSSSLTTNTSQPLGSSIFGSTPAHGS 497
Score = 37.9 bits (84), Expect = 0.062
Identities = 30/58 (51%), Positives = 32/58 (55%), Gaps = 12/58 (20%)
Query: 310 PAFGTSTAG-STLFNTTTTQA------PAFGASTNTFGFGANTQNQSTGIFGAKPATG 360
PAFG ST G ST F +TT A PAFG S NT GFGA +T FGA TG
Sbjct: 135 PAFGNSTFGSSTPFGASTTPAFGASSTPAFGVS-NTSGFGAT----NTPGFGATNTTG 187
Score = 36.3 bits (80), Expect = 0.19
Identities = 46/165 (27%), Positives = 60/165 (36%), Gaps = 35/165 (21%)
Query: 48 NSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGNPGPXXXXXXXXXX 107
NS +S+PFG T +FGAS++ PA G +NTSG G PG
Sbjct: 139 NSTFGSSTPFGA--STTPAFGASST--PAFG----VSNTSGFGATNTPGFGATNTTGFGG 190
Query: 108 XXXXXXXXXXXXXXXXXNTSTAGGG---LFGNTQATPSFGVKPXXXXXXXXXXXXXXXXX 164
NT G LFG++ ++P+FG P
Sbjct: 191 SSTPGFGASSTPAFGSTNTPAFGASSTPLFGSS-SSPAFGASP----------------- 232
Query: 165 XXXXPATGPGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQQPTGTG 209
PA G F NT S GG F G++S FG + G
Sbjct: 233 ---APAFGSSGNAFG--NNTFSSGGAF-GSSSTPTFGASNTSAFG 271
Score = 33.1 bits (72), Expect = 1.8
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 306 ANKPPAFGTSTAGSTLFNTTTTQAPAFGASTNTF--GFGANTQNQSTGIFGAK--PATGA 361
++ P GTST G F +T Q+ FG++T FG +T ST FGA PA GA
Sbjct: 100 SSNSPFGGTSTFGQKSFGLSTPQSSPFGSTTQQSQPAFGNSTFGSSTP-FGASTTPAFGA 158
>At1g80680.1 68414.m09467 nucleoporin family protein contains Pfam
profile: PF04096 nucleoporin autopeptidase
Length = 1046
Score = 72.1 bits (169), Expect = 3e-12
Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 865 LTRPGYYTIPSLDDMIN--YMRPDGTCPVPHLTIGRKNYGNVYYDSEIDVAGLDLDALVH 922
L P Y+ P +++++ PD VP TIGR YG + + DV LDLD +V
Sbjct: 49 LNSPDYFLKPCINELVEREIESPDYCSRVPDFTIGRIGYGYIRFLGNTDVRRLDLDHIVK 108
Query: 923 FLNKEVIVYPEDSDKPPVGVGLNRRAIVTL 952
F EVIVY ++S KP VG GLN+ A VTL
Sbjct: 109 FHRHEVIVYDDESSKPVVGEGLNKAAEVTL 138
Score = 43.6 bits (98), Expect = 0.001
Identities = 22/122 (18%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 1576 HGAARSSLVRSMISRHAPSSGSAPGL-QLLERIGVPEKWIHLARAHRAKYEHQPALEVEH 1634
H +++R ++ ++ + S Q ++ +G+P +W+H A A Y ++
Sbjct: 812 HPYLHVTVIREILFQYCETWSSMESQRQFIKDLGIPSEWMHEALAVYYNYHGDFVKALDQ 871
Query: 1635 LLAARQWSAAHRVLLDELLPDAVLNDDLQTVSRLLKTLEEAAERHEVADWESG-GLALSH 1693
+ W AH + + + L+ + + R+ ++++ + E+ +W+ G G+ +S
Sbjct: 872 FIECANWQRAHSIFMTSVAHSLFLSANHSEIWRIATSMDD--RKSEIENWDLGAGIYMSF 929
Query: 1694 YI 1695
Y+
Sbjct: 930 YL 931
Score = 41.1 bits (92), Expect = 0.007
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 1355 LLGGRTLE-ACKLARDSGDLNMAMLLAQAGGDAAYRGLVARQLAQWSACGAD 1405
LL GR L+ A +LA GD+ +A LL+QAGG R + +QL W G D
Sbjct: 584 LLTGRELDSAVELAISKGDVRLACLLSQAGGSTVNRNDILQQLHLWRRNGLD 635
>At3g28840.1 68416.m03598 expressed protein
Length = 391
Score = 40.7 bits (91), Expect = 0.009
Identities = 38/180 (21%), Positives = 53/180 (29%), Gaps = 5/180 (2%)
Query: 29 GDHVVNKSLGMVMCGGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSG 88
G+ + SLG+ + +G +T+S G TGS+GA A+G A T+
Sbjct: 174 GNKIDISSLGIDGIDASAAGAGDSTASG-GVSATGTGSYGAGAGGSSASGSDTAAGGTTA 232
Query: 89 GGLFGNPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPX 148
G G TA GG T A+ +
Sbjct: 233 TGGTTAAGGSTAAGGTTASGAGTAGYGATAGGATASGAGTAAGG----TTASDAGTAAGT 288
Query: 149 XXXXXXXXXXXXXXXXXXXXPATGPGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQQPTGT 208
G AG A G T + GG+ G S+G GT
Sbjct: 289 TASGAGTAAGGTTAAGAGAAAGAGAAAGAGAAAGGTTAAGGVSGSYGSSGGSASNTNGGT 348
>At3g07560.1 68416.m00903 glycine-rich protein
Length = 304
Score = 37.9 bits (84), Expect = 0.062
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 35 KSLGMVMCGGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGN 94
++ G M GG N G T+ G + A G +G+S G ++ GGGL+G+
Sbjct: 78 QNYGSTMGGGYGSNLGMTSGYGSGTYGSALGGYGSSYGGGMYGGSSMYRGGYGGGGLYGS 137
Query: 95 PG 96
G
Sbjct: 138 SG 139
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 35.5 bits (78), Expect = 0.33
Identities = 39/181 (21%), Positives = 55/181 (30%), Gaps = 15/181 (8%)
Query: 38 GMVMCGGGSFNSGATT--SSPFGGFKPATG-SFGASTSTQPATGGGLFANNTSGGGLFGN 94
G GG S + GA + S+ GG ++G + G ST ++ A+ G +T G G
Sbjct: 416 GGAASGGESASGGAASGGSAETGGESTSSGVASGGSTGSESASAGAASGGSTEANG--GA 473
Query: 95 PGPXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXXXXXXX 154
+S+ G G T + S G
Sbjct: 474 AAGGSTEAGSGTSTETSSMGGGSAAAGGVSESSSGGSTAAGGTSESASGG-----SATAG 528
Query: 155 XXXXXXXXXXXXXXPATGPGAGLFAPQGNTMSG---GGLFGGNTSAGAFGQQQPTGTGHV 211
P P AG P G+ GG FGG + G G T +
Sbjct: 529 GASGGTYTDSTGGSPTGSPSAG--GPSGSASESSMEGGTFGGQSMGGQAGSASYQSTNYQ 586
Query: 212 K 212
K
Sbjct: 587 K 587
Score = 34.3 bits (75), Expect = 0.76
Identities = 31/168 (18%), Positives = 48/168 (28%), Gaps = 3/168 (1%)
Query: 44 GGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGG--LFANNTSGGGLFGNPGPXXXX 101
GGS +G + S + S GA++ P TGG + SGG G
Sbjct: 327 GGSAETGGESGSGGAASGGESASGGATSGGSPETGGSAETGGESASGGAASGGESASGGA 386
Query: 102 XXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXXXXXXXXXXXXXX 161
+ +A GG ++ S G
Sbjct: 387 ASSGSVESGGESTGATSGGSAETSDESASGGAASGGESA-SGGAASGGSAETGGESTSSG 445
Query: 162 XXXXXXXPATGPGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQQPTGTG 209
+ AG + +GG GG+T AG+ + + G
Sbjct: 446 VASGGSTGSESASAGAASGGSTEANGGAAAGGSTEAGSGTSTETSSMG 493
Score = 31.5 bits (68), Expect = 5.4
Identities = 42/209 (20%), Positives = 66/209 (31%), Gaps = 10/209 (4%)
Query: 28 GGDHVVNKSLGMVMCGGGSFNSGATT--SSPFGGFKPATGSFGASTSTQPATGGGLFANN 85
GG+ S G GG S ++GA + S+ GG +GS GA++ + A+GG +
Sbjct: 301 GGESGEAASGGSAETGGESASAGAASGGSAETGG---ESGSGGAASGGESASGGATSGGS 357
Query: 86 TSGGGLFGNPGPXXX-XXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFG 144
GG G +T GG + + S G
Sbjct: 358 PETGGSAETGGESASGGAASGGESASGGAASSGSVESGGESTGATSGGSAETSDESASGG 417
Query: 145 VKPXXXXXXXXXXXXXXXXXXXXXPATGPGAGLFAPQGNTMSGGGLFGGNTSA---GAFG 201
++G +G + + S G GG+T A A G
Sbjct: 418 AASGGESASGGAASGGSAETGGESTSSGVASG-GSTGSESASAGAASGGSTEANGGAAAG 476
Query: 202 QQQPTGTGHVKFNPVVGTEVVMKNGTSQN 230
G+G +G G S++
Sbjct: 477 GSTEAGSGTSTETSSMGGGSAAAGGVSES 505
>At2g28670.1 68415.m03485 disease resistance-responsive family
protein / fibroin-related contains similarity to silk
fibroin heavy chain [Bombyx mori] gi|765323|gb|AAB31861;
contains disease resistance response protien domain
Pfam:FP03018
Length = 447
Score = 35.5 bits (78), Expect = 0.33
Identities = 19/53 (35%), Positives = 23/53 (43%)
Query: 38 GMVMCGGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGG 90
G + G + +GA T S GG A + G PA GGG A GGG
Sbjct: 114 GSLPTTGSATGAGAGTGSALGGGPGAGSALGGGAGAGPALGGGAGAGPALGGG 166
Score = 32.3 bits (70), Expect = 3.1
Identities = 22/84 (26%), Positives = 28/84 (33%), Gaps = 1/84 (1%)
Query: 126 TSTAGGGLFGNTQATPSFGVKPXXXXXXXXXXXXXXXXXXXXXPATGPGAGLFAPQGNTM 185
+ + G GL T + PS G P P TG G A G+ +
Sbjct: 74 SGSTGSGLGAGTGSIPSSGSGPGLLPTASSVPGSLAGGGSGSLPTTGSATGAGAGTGSAL 133
Query: 186 SGGGLFGGNTSAGAFGQQQPTGTG 209
GGG G+ G G G G
Sbjct: 134 -GGGPGAGSALGGGAGAGPALGGG 156
Score = 32.3 bits (70), Expect = 3.1
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 44 GGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGNPGP 97
G + G S GG A + G PA GGG A + GGG G GP
Sbjct: 130 GSALGGGPGAGSALGGGAGAGPALGGGAGAGPALGGGAGAGSALGGGGAG-AGP 182
Score = 31.5 bits (68), Expect = 5.4
Identities = 38/174 (21%), Positives = 51/174 (29%), Gaps = 9/174 (5%)
Query: 48 NSGATTSSPFGGFKPATG-SFGAST--STQPATGGGLFANNTSGGGLFGNPGPXXXXXXX 104
N+ + T++ G +TG FGA T S +TG G A + S G G+ G
Sbjct: 29 NAFSATTTTLGSGSGSTGIGFGAGTGSSGSGSTGFGFGAGSGSSGS--GSTGSGLGAGTG 86
Query: 105 XXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXXXXXXXXXXXXXXXXX 164
+ + G G T + G
Sbjct: 87 SIPSSGSGPGLLPTASSVPGSLAGGGSGSLPTTGSATGAGAGTGSALGGGPGAGSALGGG 146
Query: 165 XXXXPATGPGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQQPTGTGHVKFNPVVG 218
PA G GAG G + GG G G G G G P +G
Sbjct: 147 AGAGPALGGGAGA----GPALGGGAGAGSALGGGGAGAGPALGGGGAGAGPALG 196
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.1 bits (77), Expect = 0.44
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 43 GGGSFNSGATTSSPFGGFKPATGSFGASTS-TQPATGGGLFANNTSGGGLFGNPG 96
GGG S +P GG+ G +G ++S + A GGG + N+S GG G G
Sbjct: 125 GGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGGNAGGYG 179
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 34.7 bits (76), Expect = 0.58
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 41 MCGGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGNPGP 97
M G +GA+ S+P GGF G P GGG F SG G FG P
Sbjct: 806 MASAGRGFAGAS-STPTGGFAALASGSGGFAGAAPGGGGGGFGGLGSGTGGFGGFAP 861
Score = 30.7 bits (66), Expect = 9.4
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 43 GGGSFNSGATTSSPFGGFKP--ATGSFGASTSTQPATGGGLFANNTSGGGLF 92
GGG F + + FGGF P ++G F + G G A +GGG F
Sbjct: 842 GGGGFGGLGSGTGGFGGFAPQGSSGGFAGAAGGGGFGGFGGQAQGQAGGGGF 893
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 34.3 bits (75), Expect = 0.76
Identities = 40/181 (22%), Positives = 47/181 (25%), Gaps = 4/181 (2%)
Query: 33 VNKSLGMVMCG--GGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGG 90
V S+G + G GG+ G S GG S GAS GG + A GGG
Sbjct: 286 VGGSVGGAVGGAVGGAVGGGGGGSVGGGGRGSGGASGGASGGASGGAGGSVGAGGGVGGG 345
Query: 91 LFGNPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXXX 150
+ G G GG G S G
Sbjct: 346 VGGGVGGGVGGGVGGAVGGAVGGAVGGGGGGSVGGGGRGSGGASGGASGGASGGASGGAS 405
Query: 151 XXXXXXXXXXXXXXXXXXPATGPGAGLFAPQGNTMSG--GGLFGGNTSAGAFGQQQPTGT 208
G G G+ G + G GG GG G G G
Sbjct: 406 GGASGGVGGAGGAGGSVGAGGGVGGGVGGGVGGGVGGAVGGAVGGAVGGGGGGSVGGGGR 465
Query: 209 G 209
G
Sbjct: 466 G 466
Score = 31.1 bits (67), Expect = 7.1
Identities = 36/159 (22%), Positives = 44/159 (27%), Gaps = 8/159 (5%)
Query: 43 GGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGNPGPXXXXX 102
GGGS G S G A G+ GA GGG+ GGG+ G+ G
Sbjct: 244 GGGSVGGGGRGSGGVGASGGAGGNVGAGGGLGGGVGGGV------GGGVGGSVGGAVGGA 297
Query: 103 XXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXXXXXXXXXXXXXXX 162
+ A GG G + G
Sbjct: 298 VGGAVGGGGGGSVGGGGRGSGGASGGASGGASGGAGGSVGAGGGVGGGVGGGVGGGVGGG 357
Query: 163 XXXXXXPATGPGAGLFAPQGNTMSGGGLFGGNTSAGAFG 201
A G G G ++ GGG G S GA G
Sbjct: 358 VGGAVGGAVGGAVG--GGGGGSVGGGGRGSGGASGGASG 394
>At5g53150.1 68418.m06607 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 755
Score = 33.9 bits (74), Expect = 1.0
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 622 RARPADGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRNKSTADTE---ENGDLHP 678
+ P +G+ S + + + ++V+RS +V ++S E + D H
Sbjct: 427 KVNPTEGEKNSTKAMSSKASEVERSKMSSTANEVERSVEVIPHESDEVKEIVVPDSDFHN 486
Query: 679 DKHSRWINSPKISDLWTERDHKPDAQRTNRMYPDIEKEVSEHISERRASWLSTK 732
R ++ K +W D DA R Y I+K +S + + + SWL++K
Sbjct: 487 FDLDRSESAFKDDQIWAAYD---DADGMPRFYARIQKVISVNPFKLKISWLNSK 537
>At4g15150.1 68417.m02326 glycine-rich protein
Length = 102
Score = 33.9 bits (74), Expect = 1.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 171 TGPGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQQPTGTG 209
+G G GL P G GG GG +++G G+ + TGTG
Sbjct: 39 SGGGRGLKKPGGGGGGGGATSGGGSNSGVGGRGRLTGTG 77
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 33.5 bits (73), Expect = 1.3
Identities = 67/335 (20%), Positives = 99/335 (29%), Gaps = 36/335 (10%)
Query: 46 SFNSGATTSSPFGGFKPATGS-----FGASTSTQPATGGGLFANNTSGGGLFGNPGPXXX 100
SF GA+++ FG A+ S FG+S S PA+ F T+ P P
Sbjct: 67 SFGFGASSTPSFGFGSSASSSTPSFGFGSSASVTPASTTPSFGFGTAASS--SAPAPSLF 124
Query: 101 XXXXXXXXXXXXXXX-XXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXXXXXXXXXXXX 159
+T+T LFG P
Sbjct: 125 GSSTTNASSAAPGSSPFGFVTSSASSTATPSSSLFG----------APASSAATPSSSPF 174
Query: 160 XXXXXXXXXPATGPGAGLF-APQGNTMSGGGLFGGNTSAGA-----FGQQQPTGTGHVKF 213
P G LF AP + S LFG ++SA FG F
Sbjct: 175 GAAPASGSTPLFGSSPSLFSAPSSASASNSSLFGASSSAATSTSPLFGAPSSATGATPSF 234
Query: 214 N-----PVVGTEVVMKNGTSQNINIKHHCITFMKEYEGKSLEELRLEDYMAGRKGSXXXX 268
+ P + + G+S + ++ G + + GS
Sbjct: 235 SVASSAPGSSSSIFGATGSSPSFSVASSASGSSPSIFGATGSSPFFGS--SSSAGSTPSL 292
Query: 269 XXXXXXXXXXEN-KPXXXXXXXXXXXXXXXXXXXXXXXANKPPAFGTSTAGSTLFNTTTT 327
+ P A+ +F STA ST +TT +
Sbjct: 293 FASSSSGATTSSPSPFGVSTFNSSSTSNTSNASASPFSASTGFSFLKSTASSTTSSTTPS 352
Query: 328 QAPAFGASTNTFGFGANTQ---NQSTGIFGAKPAT 359
P +S+++F FG + N STG A PA+
Sbjct: 353 APPQTASSSSSFSFGTSANSGFNLSTG-SSAAPAS 386
Score = 33.1 bits (72), Expect = 1.8
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 11/66 (16%)
Query: 306 ANKPPAFGTSTAGST------LFNTTTTQAPAFGASTNTFGF----GANTQNQSTGIFGA 355
A+ P+FG TA S+ LF ++TT A + ++ FGF ++T S+ +FGA
Sbjct: 102 ASTTPSFGFGTAASSSAPAPSLFGSSTTNASSAAPGSSPFGFVTSSASSTATPSSSLFGA 161
Query: 356 KPATGA 361
PA+ A
Sbjct: 162 -PASSA 166
Score = 31.1 bits (67), Expect = 7.1
Identities = 35/159 (22%), Positives = 48/159 (30%), Gaps = 11/159 (6%)
Query: 45 GSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGG--LFGNPGPXXXXX 102
GS G TSS P++ FGA S+ F + G LFG+
Sbjct: 137 GSSPFGFVTSSASSTATPSSSLFGAPASSAATPSSSPFGAAPASGSTPLFGS---SPSLF 193
Query: 103 XXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXX--XXXXXXXXXXX 160
+TS G T ATPSF V
Sbjct: 194 SAPSSASASNSSLFGASSSAATSTSPLFGAPSSATGATPSFSVASSAPGSSSSIFGATGS 253
Query: 161 XXXXXXXXPATGPGAGLFAPQGNTMSGGGLFGGNTSAGA 199
A+G +F G++ FG ++SAG+
Sbjct: 254 SPSFSVASSASGSSPSIFGATGSS----PFFGSSSSAGS 288
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 32.7 bits (71), Expect = 2.3
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 606 LEDKLCLK-PSRK-RLVLRARPADGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRS 658
++DKL K P RK RL L AR + +D +T F+ P S+D+ D+S
Sbjct: 24 VKDKLTFKAPERKSRLGLDARAIEKKDNAKTEGEFKVPKKSAISVTSSLDEEDKS 78
>At4g30460.1 68417.m04325 glycine-rich protein
Length = 162
Score = 31.9 bits (69), Expect = 4.1
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 43 GGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSG 88
GGG SGA S GG ++ S +S+S+ + GGG A + +G
Sbjct: 51 GGGGSGSGAGAGSGSGGGGSSSSSSSSSSSSSSSGGGGGDAGSEAG 96
>At1g54450.1 68414.m06211 calcium-binding EF-hand family protein
contains Pfam profile: PF00036 EF hand
Length = 535
Score = 31.9 bits (69), Expect = 4.1
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 40 VMCGGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGNP 95
VMCGGGS + + ++SP PA G S + +TG A +G +P
Sbjct: 60 VMCGGGSSGTNSGSNSPLASMFPARN--GPPLSPRNSTGSPRIARQRTGLSNLSSP 113
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 31.5 bits (68), Expect = 5.4
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 627 DGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRNKS-TADTEENGDLHPDKHSRWI 685
DG E NR +++ S R ++ DR + +R++ D E + D +H R+
Sbjct: 298 DGYHERERNRDYDRESDRNERDRERTRDRDRDYERDRDRDRDRDRERDRDRRDYEHDRYH 357
Query: 686 NSPKISDLWTERDHKPDAQRTNRMYPDIEKE 716
+ D +RD + RT+ D ++
Sbjct: 358 DRDWDRDRSRDRDRDHERDRTHDREKDRSRD 388
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 31.5 bits (68), Expect = 5.4
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 606 LEDKLCLKPSRKRLVLRARPADGQ-DEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRN 664
+E++ LK SR+ R R + + D+G R + ++ DS D DR D R
Sbjct: 16 VEEEADLKKSRRD---RDRSNERKKDKGSEKRREKDRRKKRVKSSDSEDDYDRDDDEERE 72
Query: 665 KSTADTEENGDLHPDKHSRWINSPKISDLWTERDHKPDAQRTNRMYPDIEKEVSEHISER 724
K E D+ R K SD +E D + + +R R + E+ EH +R
Sbjct: 73 KRKEKERERRRRDKDRVKRRSERRKSSD--SEDDVEEEDERDKRRVNEKERGHREHERDR 130
>At5g15430.1 68418.m01806 calmodulin-binding protein-related has
weak similarity to calmodulin-binding proteins
Length = 478
Score = 31.1 bits (67), Expect = 7.1
Identities = 44/198 (22%), Positives = 72/198 (36%), Gaps = 14/198 (7%)
Query: 614 PSRKRLVLRARPADGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRNKSTADTEEN 673
P RKR+ A D ++ +P P R DSV D + RN S+ +
Sbjct: 66 PHRKRVSRSFSGAINLDSPLRKKALTKPLLSPSRRCDSVGGFDHAKSQVRNFSSGVCDVK 125
Query: 674 GDLHPDKHSRWINSPKISDLWTERDHKPDAQRTNRMYPDIEKEVSEHISERRASWLSTKP 733
H D + + S S L K ++T + KE+ E +RR + L K
Sbjct: 126 KS-HADGTNEKVVSVSESRLADSTKRKKKKKKTVYVSRGRAKEIVE--QKRRVTALKLKA 182
Query: 734 LXXXXXXXXXXXXESSVRELGGRSASPERDRLDSLSGTSIQFCAHRRGALAACSRCEKIA 793
+ + GG A+ ++ + +L S+ + CSRC K
Sbjct: 183 VAQTAEIALRRSTVKRKKMNGGSKAAEQKKAVMALRRASM--------SSKGCSRCLKTK 234
Query: 794 HQISGVYGYHFKLKKRRR 811
+ + + LKK R+
Sbjct: 235 KESNSL---SVPLKKTRK 249
>At1g73590.1 68414.m08519 auxin efflux carrier protein, putative
(PIN1) identical to putative auxin efflux carrier
protein; AtPIN1 [Arabidopsis thaliana] GI:4151319;
contains Pfam profile PF03547: Auxin Efflux Carrier
Length = 622
Score = 31.1 bits (67), Expect = 7.1
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 43 GGGSFNSGATTSSPFGGFK-PATGSFGASTSTQPATGGGLFANNTSGGG 90
GG + + A T++ G F + GS G + PA G+F+ NT GGG
Sbjct: 296 GGPAKPTAAGTAAGAGRFHYQSGGSGGGGGAHYPAPNPGMFSPNTGGGG 344
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 31.1 bits (67), Expect = 7.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 31 HVVNKSLGMVMCGGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGG 90
+V++ S G + SG + SP GG + S G + + P+TGGG + + GGG
Sbjct: 383 YVISNSGGSGNGTNSTSTSGGGSPSP-GGGSGSPPSTGGGSGSPPSTGGGGGSPSKGGGG 441
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 30.7 bits (66), Expect = 9.4
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 43 GGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGN 94
GGG + G GG+ G +G S GG + N SGGG GN
Sbjct: 126 GGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGG--YGGN-SGGGYGGN 174
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 30.7 bits (66), Expect = 9.4
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 43 GGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGNPG 96
GGG +N G + GG+ G + +P GGG + S GG +G+ G
Sbjct: 302 GGGGYNRGGYSMGGGGGYGGGPGDMYGGSYGEP--GGGYGGPSGSYGGGYGSSG 353
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 30.7 bits (66), Expect = 9.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 43 GGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFG 93
G G+ +G T + GG TG+ G T T TG G +G G G
Sbjct: 163 GTGTGGTGTGTGTGTGGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGG 213
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 30.7 bits (66), Expect = 9.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 43 GGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFG 93
G G+ +G T + GG TG+ G T T TG G +G G G
Sbjct: 163 GTGTGGTGTGTGTGTGGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGG 213
>At2g47220.1 68415.m05897 3' exoribonuclease family domain 1
protein-related similar to polynucleotide phosphorylase
[Pisum sativum] GI:2286200, polyribonucleotide
phophorylase [Spinacia oleracea] GI:1924972; contains
Pfam profiles PF05266: Protein of unknown function
(DUF724), weak hit to PF01138: 3' exoribonuclease
family, domain 1
Length = 469
Score = 30.7 bits (66), Expect = 9.4
Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 605 SLEDKLCLKPSRKRLVLRARPADGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRN 664
SL+ + P V+ + P + + G ++ + + P ++Q++RS D +R
Sbjct: 184 SLDSNESVSPVTSSPVITSTPLEHTEAGTKGKTVPKKTLQPME----MNQLERSEDNSRK 239
Query: 665 KSTADTEENGDLHPD-KHSRWINSPKISDLWTERDHKPDAQRTNRMYPDIEK 715
+ + E N DL+ S W P + + D + A+ + P ++K
Sbjct: 240 RKRGELEHNSDLNETVLPSDWTPDPVKNFAADDDDEETKAKDATMVLPFVKK 291
>At1g19990.1 68414.m02504 expressed protein ; expression supported
by MPSS
Length = 251
Score = 30.7 bits (66), Expect = 9.4
Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 600 EESDSSLEDKLCLKPSRKRLV--LRARPADGQDEGRTNRSFEQPSSG----PGRTQDSVD 653
EE + SL KP+ + + + D+ N+ + SG P + ++ +D
Sbjct: 17 EEDNKSLSSFAKKKPTNGNNAGSKKLKKEENDDDDDDNKPIKSSVSGSRAKPVKKKEEID 76
Query: 654 QVDRSADVN-RNKSTADTEENGDLHPDKHSRWINSPKISDLWTERDHKPDAQRTNRM-YP 711
+ D V+ RN S ++EN ++ + K+ DL ++ +PD + R+ Y
Sbjct: 77 KDDEKKPVSKRNSSVGVSKENKKPEKEEEVKKKRERKVYDLPGQKREQPDERDPLRIFYE 136
Query: 712 DIEKEVSEHISERRASWL 729
+ K++ S+ WL
Sbjct: 137 SLYKQIP--TSDMAQIWL 152
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.132 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,952,891
Number of Sequences: 28952
Number of extensions: 1550464
Number of successful extensions: 4193
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3911
Number of HSP's gapped (non-prelim): 245
length of query: 1803
length of database: 12,070,560
effective HSP length: 92
effective length of query: 1711
effective length of database: 9,406,976
effective search space: 16095335936
effective search space used: 16095335936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 66 (30.7 bits)
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