GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001818-TA|BGIBMGA001818-PA|IPR007230|Peptidase S59,
nucleoporin
         (1803 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    27   0.88 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   2.0  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    26   2.7  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    26   2.7  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    26   2.7  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    26   2.7  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    26   2.7  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           26   2.7  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    26   2.7  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   8.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     24   8.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   8.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   8.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   8.2  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 642 SSGPGRTQDSVDQVDRSADVNRNKSTADTEENG-DLHPDKHSRWINSPKISDLWTERDH 699
           +S PG+   S    + S+  +   ST+ TE+ G + +  K S+  N P+I   W +R H
Sbjct: 151 TSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIYP-WMKRVH 208


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 627 DGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRNKSTAD-TEENGDLHPDKHSRWI 685
           DG+DE R++ +  +  S      +S ++   S   N+N S AD +   G + P  H+   
Sbjct: 26  DGEDEKRSSENLTEEKSSLIDLTESEEKSGGSYSSNKNVSRADHSPVFGKVEPVPHTSSF 85

Query: 686 N 686
           N
Sbjct: 86  N 86


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 642 SSGPGRTQDSVDQVDRSADVNRNKSTADTEENGDLHPDKHSRWINSPKISDLWTERDH 699
           +S PG+   S    + S+  +   ST+ TE+ G  + +  S   ++P     W +R H
Sbjct: 151 TSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVH 208


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 642 SSGPGRTQDSVDQVDRSADVNRNKSTADTEENGDLHPDKHSRWINSPKISDLWTERDH 699
           +S PG+   S    + S+  +   ST+ TE+ G  + +  S   ++P     W +R H
Sbjct: 151 TSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVH 208


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 642 SSGPGRTQDSVDQVDRSADVNRNKSTADTEENGDLHPDKHSRWINSPKISDLWTERDH 699
           +S PG+   S    + S+  +   ST+ TE+ G  + +  S   ++P     W +R H
Sbjct: 151 TSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVH 208


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 642 SSGPGRTQDSVDQVDRSADVNRNKSTADTEENGDLHPDKHSRWINSPKISDLWTERDH 699
           +S PG+   S    + S+  +   ST+ TE+ G  + +  S   ++P     W +R H
Sbjct: 151 TSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVH 208


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 642 SSGPGRTQDSVDQVDRSADVNRNKSTADTEENGDLHPDKHSRWINSPKISDLWTERDH 699
           +S PG+   S    + S+  +   ST+ TE+ G  + +  S   ++P     W +R H
Sbjct: 107 TSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVH 164


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 642 SSGPGRTQDSVDQVDRSADVNRNKSTADTEENGDLHPDKHSRWINSPKISDLWTERDH 699
           +S PG+   S    + S+  +   ST+ TE+ G  + +  S   ++P     W +R H
Sbjct: 151 TSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVH 208


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 642 SSGPGRTQDSVDQVDRSADVNRNKSTADTEENGDLHPDKHSRWINSPKISDLWTERDH 699
           +S PG+   S    + S+  +   ST+ TE+ G  + +  S   ++P     W +R H
Sbjct: 151 TSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVH 208


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 627 DGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRNKSTADTEENGDLHPDKHSRWIN 686
           D +   ++ +  E PS+G   + D +  +  +   N N  +A        +    +  + 
Sbjct: 93  DDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGNNNNTPSATNNNTNFNNNSNGASSVG 152

Query: 687 SPKISDLWTERDHKPDAQRTNRMYPDIEKE---VSEHISERRAS 727
           S    D   E D + +   +    P I K+   VS  +  RR S
Sbjct: 153 SSSPFDKLIEEDSRSNEDTSLHPSPRITKKANSVSVKVENRRNS 196


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 1624 YEHQPALEVEHLLAARQWSAAHRVLLDELLPDAVLNDDLQTVSRLLKTLEEAAERHEVAD 1683
            Y H P L     +     +AAH  LL   +P  +   D   +        EA  R  +  
Sbjct: 105  YNHSPHLSHMQFMQLPHPAAAHSALLSPAMPHNLTRHDGSVIKNQGMPTMEAIARSGI-- 162

Query: 1684 WES 1686
            WE+
Sbjct: 163  WEN 165


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 543 LLPDSTTAAEDILKPTNPLALKAVLDGSHSAYRINSPTSRVQPRQLPVHK 592
           L+     AA  +  PTNP      L     A++ NSP S   P +LP  K
Sbjct: 37  LMASHLMAASRLSLPTNPAFFHPGL--LPLAWQANSPPSPPAPSELPALK 84


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 627 DGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRNKSTADTEENGDLHPDKHSRWIN 686
           D +   ++ +  E PS+G   + D +  +  +   N N  +A        +    +  + 
Sbjct: 41  DDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGNNNNTPSATNNNTNFNNNSNGASSVG 100

Query: 687 SPKISDLWTERDHKPDAQRTNRMYPDIEKE---VSEHISERRAS 727
           S    D   E D + +   +    P I K+   VS  +  RR S
Sbjct: 101 SSSPFDKLIEEDSRSNEDTSLHPSPRITKKANSVSVKVENRRNS 144


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 627 DGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRNKSTADTEENGDLHPDKHSRWIN 686
           D +   ++ +  E PS+G   + D +  +  +   N N  +A        +    +  + 
Sbjct: 224 DDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGNNNNTPSATNNNTNFNNNSNGASSVG 283

Query: 687 SPKISDLWTERDHKPDAQRTNRMYPDIEKE---VSEHISERRAS 727
           S    D   E D + +   +    P I K+   VS  +  RR S
Sbjct: 284 SSSPFDKLIEEDSRSNEDTSLHPSPRITKKANSVSVKVENRRNS 327


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.132    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,953
Number of Sequences: 317
Number of extensions: 14169
Number of successful extensions: 70
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 14
length of query: 1803
length of database: 114,650
effective HSP length: 67
effective length of query: 1736
effective length of database: 93,411
effective search space: 162161496
effective search space used: 162161496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)