Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001818-TA|BGIBMGA001818-PA|IPR007230|Peptidase S59,
nucleoporin
(1803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 75 7e-14
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 44 2e-04
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 33 0.37
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 32 0.85
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 30 2.6
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 30 3.4
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 29 6.0
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 29 6.0
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 29 6.0
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 29 6.0
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 29 7.9
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 29 7.9
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 29 7.9
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 75.4 bits (177), Expect = 7e-14
Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 2/145 (1%)
Query: 1555 AEQLEAGGAWQLATAVLAYHPHGAARSSLVRSMISRHAPSSGSAPGLQLLERIGVPEKWI 1614
A QLEA G W + VL + + R+S + S ++R+ A ++++E++ +PE W+
Sbjct: 1560 ASQLEASGQWLWSLFVLLHLENVETRTSTITSCLARNLRGGLGAGAVEMIEKLCIPESWL 1619
Query: 1615 HLARAHRAKYEHQPALEVEHLLAARQWSAAHRVLLDELLPDAVLNDDLQTVSRLLKTLEE 1674
+ A+A A+Y E+ L A + AH+VLLD L P AV++ + + + L+
Sbjct: 1620 NEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDTLAPQAVISGNKTQLKKALEGFN- 1678
Query: 1675 AAERHEVADWESGGLALSHYIHVCD 1699
+ +A W GG S Y+ + +
Sbjct: 1679 -GQTDGLASWRFGGQIYSDYLDLLE 1702
Score = 72.5 bits (170), Expect = 5e-13
Identities = 85/325 (26%), Positives = 107/325 (32%), Gaps = 38/325 (11%)
Query: 50 GATTSSPFGGFKPATGSFGASTSTQPATGGGLFANN--TSGGGLFGNPGPXXXXXXXXXX 107
G SS FGG TG+FG + GGLF +N T G LFG+
Sbjct: 3 GQNNSSGFGG---GTGAFGQNNQQT----GGLFGSNSNTPGNTLFGSQNTSTTGFGQNTT 55
Query: 108 XXXXXXXXXXXXXXXXXNTSTAGG---------GLFGNTQATPSFGVKPXXXXXXXXXXX 158
NT+T GG G+FG + TP+FG
Sbjct: 56 QPLFGSNTNGGLFGNRNNTTTTGGTGFGMSSGTGMFGQSN-TPAFGGTNNATNPSGGGLF 114
Query: 159 XXXXXXXXXXPATGPGAGLFAPQ---GNTMSGGGLFGGNTSAGAFGQQQPTGTGHVKFNP 215
T G A G+ +GGGLFG +T+ +G N
Sbjct: 115 GSNTANNNANTGTSFSFGSNAGSTGFGSQGTGGGLFGSSTTPATTNAFGTSGFVSSNANA 174
Query: 216 VVGTE-----VVMKNGTSQNINIKHHCITFMKEYEGKSLEELRLEDYMAGRKGSXXXXXX 270
V GT V + N IT M Y S EELRL+DY GR+
Sbjct: 175 VNGTANPPYAVTSEKDPQTNGTSVFQSITCMPAYRSYSFEELRLQDYNQGRR-------- 226
Query: 271 XXXXXXXXENKPXXXXXXXXXXXXXXXXXXXXXXXANKPPAFGTSTAGSTLFNT-TTTQA 329
N N FGTS A +T +
Sbjct: 227 --FGNASSTNTTSAFGSTPAFGASTTPFGQNLSGTTNNATPFGTSNATNTTPGSGLFGGG 284
Query: 330 PAFGASTNTFGFGANTQNQSTGIFG 354
AFG++T GFG+ T N S G+FG
Sbjct: 285 SAFGSNTTNTGFGSGTNNASGGLFG 309
Score = 66.5 bits (155), Expect = 3e-11
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 870 YYTIPSLDDMINYMRPDGTCPVPHLTIGRKNYGNVYYDSEIDVAGLDL-----DALVHFL 924
Y+ PS++++ Y + + C V ++GR YG V + +D++G + +V F
Sbjct: 796 YWMKPSIEELSKYPK-EKLCSVHQFSVGRTGYGQVAFLKPVDLSGFEKLEDIPGKVVVFE 854
Query: 925 NKEVIVYPEDSDKPPVGVGLNRRAIVTLDRVWPRDKTEKRLITEPDS 971
K VYP + PP+G GLN AI+TL++ WP + + I +P +
Sbjct: 855 RKICAVYPVEGSSPPLGEGLNVPAIITLEKTWPLSRETREPIKDPQN 901
Score = 44.0 bits (99), Expect = 2e-04
Identities = 76/333 (22%), Positives = 98/333 (29%), Gaps = 34/333 (10%)
Query: 49 SGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGNPGPXXXXXXXXXXX 108
S T+S FG +T +FGAST+ G + T+ FG
Sbjct: 231 SSTNTTSAFG----STPAFGASTTPF----GQNLSGTTNNATPFGTSNATNTTPGSGLFG 282
Query: 109 XXXXXXXXXXXXXXXXNTSTAGGGLFG---NTQATPSFGVKPXXXXXXXXXXXXXXXXXX 165
T+ A GGLFG NT +TPS G+
Sbjct: 283 GGSAFGSNTTNTGFGSGTNNASGGLFGQNNNTTSTPSTGLFGGSTFNQQKPAFSGFGSTT 342
Query: 166 XXXPATGPGAGLFAPQGNTMSG-----GGLFGGNTSAGAFGQQQPTG--TGHVKFNPVVG 218
TG G GLF T +G GGLFGG + G TG + P G
Sbjct: 343 NTTN-TGTGTGLFGSNNATNTGTGQTTGGLFGGAATGTGTGFGSSTGGFGSNTNNQPNSG 401
Query: 219 TEVVMKNGTSQNINIKHHCITFMKEYEGKSLEELRLEDYMAGRKGSXXXXXXXXXXXXXX 278
T G N N ++ + G + +
Sbjct: 402 TMGTGLFGFGANNNTANNNTAPTSTFGGNNSSNFS----FGANNNAATKPSGFGFGSTTT 457
Query: 279 ENKPXXXXXXXXXXXXXXXXXXXXXXXANKPPA---FGTSTAG---STLFNTTTTQAPAF 332
A KP FG AG +T N T T F
Sbjct: 458 TPASGGFSFGQNANNAPKPAFGSTATTAPKPAGTGLFGGLGAGANTNTATNATGTGGSLF 517
Query: 333 G----ASTNTFGFGANTQNQSTGIFGAKPATGA 361
G A +N FG AN+ TG+FG+ A
Sbjct: 518 GNANTAGSNMFG-SANSSTPGTGLFGSTQTNNA 549
Score = 43.2 bits (97), Expect = 3e-04
Identities = 52/212 (24%), Positives = 66/212 (31%), Gaps = 23/212 (10%)
Query: 28 GGDHVVNKSLGMVMCGGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTS 87
G ++ N G GG F AT + GF +TG FG++T+ QP +G T
Sbjct: 355 GSNNATNTGTGQTT--GGLFGGAATGTGT--GFGSSTGGFGSNTNNQPNSG-------TM 403
Query: 88 GGGLFG-NPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGL-FGNTQATP---- 141
G GLFG N +T G FG+T TP
Sbjct: 404 GTGLFGFGANNNTANNNTAPTSTFGGNNSSNFSFGANNNAATKPSGFGFGSTTTTPASGG 463
Query: 142 -SFGVKPXXX---XXXXXXXXXXXXXXXXXXPATGPGAGLFAPQGNTMSGGGLFGGNTSA 197
SFG G GA T +GG LFG +A
Sbjct: 464 FSFGQNANNAPKPAFGSTATTAPKPAGTGLFGGLGAGANTNTATNATGTGGSLFGNANTA 523
Query: 198 GA--FGQQQPTGTGHVKFNPVVGTEVVMKNGT 227
G+ FG + G F GT
Sbjct: 524 GSNMFGSANSSTPGTGLFGSTQTNNATSNTGT 555
Score = 42.3 bits (95), Expect = 6e-04
Identities = 35/116 (30%), Positives = 44/116 (37%), Gaps = 11/116 (9%)
Query: 29 GDHVVNKSLGMVMCGG--GSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNT 86
G + G GG G+ N+ TT G TG FG S + PA GG A N
Sbjct: 51 GQNTTQPLFGSNTNGGLFGNRNNTTTTGGTGFGMSSGTGMFGQSNT--PAFGGTNNATNP 108
Query: 87 SGGGLFGNPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPS 142
SGGGLFG+ + GGGLFG++ TP+
Sbjct: 109 SGGGLFGS------NTANNNANTGTSFSFGSNAGSTGFGSQGTGGGLFGSS-TTPA 157
Score = 38.3 bits (85), Expect = 0.010
Identities = 44/185 (23%), Positives = 54/185 (29%), Gaps = 10/185 (5%)
Query: 28 GGDHVVNKSLGMVMCGGGSFNSGATTSSPFG-GFKPATGS-FGASTSTQPATGGGLFANN 85
G + N + G + GGGS TT++ FG G A+G FG + +T GLF
Sbjct: 267 GTSNATNTTPGSGLFGGGSAFGSNTTNTGFGSGTNNASGGLFGQNNNTTSTPSTGLF--- 323
Query: 86 TSGGGLFGNPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXNTST--AGGGLFGNTQATPSF 143
GG F P NT T GGLFG
Sbjct: 324 --GGSTFNQQKPAFSGFGSTTNTTNTGTGTGLFGSNNATNTGTGQTTGGLFGGAATGTGT 381
Query: 144 GVKPXXXXXXXXXXXXXXXXXXXXXPATGPGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQ 203
G G GA NT G N+S +FG
Sbjct: 382 GF-GSSTGGFGSNTNNQPNSGTMGTGLFGFGANNNTANNNTAPTSTFGGNNSSNFSFGAN 440
Query: 204 QPTGT 208
T
Sbjct: 441 NNAAT 445
Score = 37.9 bits (84), Expect = 0.013
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 1277 SAAYCREVWRLCDALWGADLENGGIPGT-DEQSIVNRHKKLLRWFEDAVAGVTDAELAEP 1335
S+ Y VW L L+ D +N +P ++ ++KL+R E +T + E
Sbjct: 1265 SSGYESIVWDLTSILF--DPKNYSLPSELSSEAREVLYQKLVR--ESLSEWIT--KTLEH 1318
Query: 1336 RGTELEDESDTHSARIWTLLLGGRTLEACKLARDSGDLNMAMLLAQAGGDAAYRGLVARQ 1395
T L E++T RI+ LL G +AC+ A S + ++ L+ D + V +Q
Sbjct: 1319 ETTTLAKEAETSEERIYILLTGNLIGQACEEAVQSQNNRLSTLIPLVNSDVDIQQEVKQQ 1378
Query: 1396 LAQWSACG 1403
L +W G
Sbjct: 1379 LEEWRKHG 1386
Score = 37.1 bits (82), Expect = 0.023
Identities = 39/113 (34%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 43 GGGSF-NSGATTSSPFGGFK---PATGSFGASTSTQPAT---GGGLF----ANNTSGGG- 90
GG F N+ S+ FG P TG FG ST T AT G GLF AN T+ GG
Sbjct: 513 GGSLFGNANTAGSNMFGSANSSTPGTGLFG-STQTNNATSNTGTGLFGSNNANTTNTGGS 571
Query: 91 LFGNPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXN----TSTAGGGLFGNTQA 139
LF P N TS G GLFG +QA
Sbjct: 572 LFNKPSTTTGGLFGNTTAQQPSTTTSGLFGASNTNNQAQTSNFGTGLFGGSQA 624
Score = 35.5 bits (78), Expect = 0.069
Identities = 78/323 (24%), Positives = 95/323 (29%), Gaps = 29/323 (8%)
Query: 48 NSGATTSSPFGGFKPATGSFGASTST-QPATGGGLFANN--TSGGGLFGNPGPXXXXXXX 104
++G S F KPA FG++T+T TG GLF +N T+ G G
Sbjct: 319 STGLFGGSTFNQQKPAFSGFGSTTNTTNTGTGTGLFGSNNATNTGTGQTTGGLFGGAATG 378
Query: 105 XXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXXXXXXXXXXXXXXXXX 164
N+ T G GLFG +
Sbjct: 379 TGTGFGSSTGGFGSNTNNQPNSGTMGTGLFGFGANNNTANNNTAPTSTFGGNNSSNFSFG 438
Query: 165 XXXXPATGP-GAGLFAPQGNTMSGGGLFGGNTSAGAFGQQQPTGTGHVKFNPVVGTEVVM 223
AT P G G + SGG FG N + T T K GT +
Sbjct: 439 ANNNAATKPSGFGFGSTTTTPASGGFSFGQNANNAPKPAFGSTATTAPK---PAGTGLFG 495
Query: 224 KNGTSQNINIKHHCITFMKEYEGKSLEELRLEDYMAGRKGSXXXXXXXXXXXXXXENKPX 283
G N N + G + M G S N
Sbjct: 496 GLGAGANTNTATNATGTGGSLFGNANTA---GSNMFGSANSSTPGTGLFGSTQT--NNAT 550
Query: 284 XXXXXXXXXXXXXXXXXXXXXXANKPPAFGTSTAGSTLFNTTTTQAPAFGASTNTFG-FG 342
NKP T+T G LF TT Q P ST T G FG
Sbjct: 551 SNTGTGLFGSNNANTTNTGGSLFNKP---STTTGG--LFGNTTAQQP----STTTSGLFG 601
Query: 343 A-NTQNQS------TGIFGAKPA 358
A NT NQ+ TG+FG A
Sbjct: 602 ASNTNNQAQTSNFGTGLFGGSQA 624
Score = 32.7 bits (71), Expect = 0.48
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 312 FGTSTAGSTLFNTTTTQAPAFGASTNTFGFGANTQNQSTG--IFGAKPATG 360
FG+ +T F TTQ P FG++TN FG +TG FG TG
Sbjct: 40 FGSQNTSTTGFGQNTTQ-PLFGSNTNGGLFGNRNNTTTTGGTGFGMSSGTG 89
Score = 32.3 bits (70), Expect = 0.64
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 314 TSTAGSTLFNTTTTQAPAFGASTNTFGFGANTQNQSTGIFGAKPAT 359
++T G+TLF + T FG +T FG+NT G+FG + T
Sbjct: 32 SNTPGNTLFGSQNTSTTGFGQNTTQPLFGSNTNG---GLFGNRNNT 74
Score = 30.7 bits (66), Expect = 2.0
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 455 AAPSFGTLGLGTF-QQQPA------NTFKTDGVLGGGMFGNNNALGSG 495
+ PS G G TF QQ+PA T T+ G G+FG+NNA +G
Sbjct: 316 STPSTGLFGGSTFNQQKPAFSGFGSTTNTTNTGTGTGLFGSNNATNTG 363
Score = 29.9 bits (64), Expect = 3.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 314 TSTAGSTLFNTTTTQAPAFGASTNTFGF-GANTQNQSTGIFGAKPAT 359
+ST G+ LF +T T T FG ANT N +F KP+T
Sbjct: 533 SSTPGTGLFGSTQTNNATSNTGTGLFGSNNANTTNTGGSLFN-KPST 578
Score = 29.1 bits (62), Expect = 6.0
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 307 NKPPAFGTSTAGSTLFNTTTTQAPAFGASTNTFGFGANTQNQSTGIFGAKPAT 359
N+ FG A ST + PAFGAST FG + + FG AT
Sbjct: 222 NQGRRFGN--ASSTNTTSAFGSTPAFGASTTPFGQNLSGTTNNATPFGTSNAT 272
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 44.0 bits (99), Expect = 2e-04
Identities = 42/167 (25%), Positives = 57/167 (34%), Gaps = 16/167 (9%)
Query: 46 SFNSGATTSSPFGGFKPATGSFGASTSTQPATGG--GLFANNTSG----GGLFGNPGPXX 99
SFN G +S F KPA + A + PA G G NNTS GGLFG+
Sbjct: 2 SFNPGNNQNSGFSFGKPAQPNSAAQGAATPAATGLFGNTNNNTSSTAPSGGLFGSNN--- 58
Query: 100 XXXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXXXXXXXXXXXX 159
N ST+ FG+T + G KP
Sbjct: 59 ---ASNTSAPSTFSFGKAATTGNSTNASTSSPFSFGSTNTNNTAGAKPLFGGLGSTGSAN 115
Query: 160 XXXXXXXXXPATGPGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQQPT 206
++ GA P G+T + FG + ++ FG+ T
Sbjct: 116 STGDKSKNTASSATGAATTNPSGSTFN----FGSSNNSFNFGKPAST 158
Score = 34.3 bits (75), Expect = 0.16
Identities = 48/194 (24%), Positives = 66/194 (34%), Gaps = 20/194 (10%)
Query: 34 NKSLGMVMCGGGSF--NSGATTSSP----FGGFKPATGSFGASTSTQPATGGGLFANNTS 87
N + GG F N+ + TS+P FG S ASTS+ P + G NNT+
Sbjct: 41 NNNTSSTAPSGGLFGSNNASNTSAPSTFSFGKAATTGNSTNASTSS-PFSFGSTNTNNTA 99
Query: 88 GG-GLFGNPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGL-FGNTQATPSFGV 145
G LFG G T+ +G FG++ + +FG
Sbjct: 100 GAKPLFGGLG-----STGSANSTGDKSKNTASSATGAATTNPSGSTFNFGSSNNSFNFG- 153
Query: 146 KPXXXXXXXXXXXXXXXXXXXXXPATG-----PGAGLFAPQGNTMSGGGLFGGNTSAGAF 200
KP ATG P A + T SGG FG S G+
Sbjct: 154 KPASTTNTTTPAAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGKPASLGST 213
Query: 201 GQQQPTGTGHVKFN 214
+ T + F+
Sbjct: 214 NNASTSTTANSGFS 227
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 33.1 bits (72), Expect = 0.37
Identities = 34/125 (27%), Positives = 42/125 (33%), Gaps = 13/125 (10%)
Query: 27 PGGDHVVNKSLGMVMCGGGSFNSGATTS-----SPFGGFKPATGSFGASTSTQPATGG-G 80
PGG + S GG FN T + +P GG +G + TQPA
Sbjct: 92 PGGS-LFGASTTKPQAPGGLFNQNQTQAQPAQAAPTGGLFGLSGQNQTQSQTQPAQANTS 150
Query: 81 LFANNTSG--GGLFGNPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQ 138
LF + G GGLF P + + G GL NTQ
Sbjct: 151 LFGQSNIGTTGGLFDQNRPNTSTFGQFSTQPASAGLFGQSTQP----SGSTGFGLSNNTQ 206
Query: 139 ATPSF 143
TP F
Sbjct: 207 TTPFF 211
Score = 31.5 bits (68), Expect = 1.1
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 36 SLGMVMCGGGSFNSGATTSSPFG-GFKPATGSFGASTSTQPATGGGLFAN------NTSG 88
S G + +F + ++P GF TG GA T+P TGG LF N T G
Sbjct: 23 SAGTGLFSSNTFGNNTQANTPASTGFGGVTG--GAFGQTKPQTGGSLFGNKPNATSTTPG 80
Query: 89 GGLFG-NP 95
LFG NP
Sbjct: 81 LNLFGQNP 88
Score = 30.3 bits (65), Expect = 2.6
Identities = 38/154 (24%), Positives = 46/154 (29%), Gaps = 6/154 (3%)
Query: 62 PATGSFGAST-STQPATGGGLFANNTSGGGLFGN-PGPXXXXXXXXXXXXXXXXXXXXXX 119
P+ GS G +T + G GLF++NT G N P
Sbjct: 8 PSFGSTGTQNQNTGTSAGTGLFSSNTFGNNTQANTPASTGFGGVTGGAFGQTKPQTGGSL 67
Query: 120 XXXXXN-TSTAGG-GLFG-NTQATPSFGVKPXXXXXXXXXXXXXXXXXXXXXPA-TGPGA 175
N TST G LFG N QA P + PA P
Sbjct: 68 FGNKPNATSTTPGLNLFGQNPQAAPGGSLFGASTTKPQAPGGLFNQNQTQAQPAQAAPTG 127
Query: 176 GLFAPQGNTMSGGGLFGGNTSAGAFGQQQPTGTG 209
GLF G + + FGQ TG
Sbjct: 128 GLFGLSGQNQTQSQTQPAQANTSLFGQSNIGTTG 161
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 31.9 bits (69), Expect = 0.85
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 536 DSPLFKDLLPDSTTAAEDILK---PTNPLALKAVLDGSH 571
+ LF + +P+S +AAE +LK N L K VLDG H
Sbjct: 67 EKELFSERIPESQSAAEPVLKVENSENDLDEKLVLDGQH 105
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 30.3 bits (65), Expect = 2.6
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 573 AYRINSPTSRVQPRQLPVHKKSLFDGLEESDSSLEDKLCLKPSRKRLVLRARPADGQDEG 632
AY + P V QL + K S E++ + KL + +K+L++R R DG D G
Sbjct: 302 AYMYDRPEMAVNDAQLQL-KVSRATTFEDAYDIIS-KLSVSDMKKKLLIRFRNEDGLDYG 359
Query: 633 RTNRSF 638
+R F
Sbjct: 360 GVSREF 365
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 660 DVNRNKSTADTEENGDLHPDKHS--RWINSPKISDLWTERD 698
++NR K T+D + N +H D R +N +LW + D
Sbjct: 245 EINRQKDTSDMKRNNRVHMDDEDGPRRMNLEDYQELWDQED 285
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 29.1 bits (62), Expect = 6.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 641 PSSGPGRTQDSVDQVDRSADVNRNKSTADT----EENGDLHPDKHSRW---INSPKIS 691
PSSG Q S+ V+ S+ V N + E D D+H W ++PKIS
Sbjct: 19 PSSGKPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKIS 76
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 29.1 bits (62), Expect = 6.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 1651 ELLPDAVLNDDLQTVSRLLKTLEEAAERHEVADWESGGLALSHYI 1695
E +P + ND+ + V ++ EE E + E+GG+A S Y+
Sbjct: 485 EAVPISKKNDEPENVEQIDDAEEEDLEHQRELEAEAGGVAYSEYV 529
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 29.1 bits (62), Expect = 6.0
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 51 ATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGN 94
A ++P GFK SFGA+ S QPA+ G S FGN
Sbjct: 985 AGDTAPASGFKSGF-SFGANNSPQPASMFGTSTPAPSSAFAFGN 1027
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 1298 NGGIPGTDEQSIVNRHKKLLRWFEDAVAGVTDAELAEPRGTELED 1342
NGG+ DE+SI N+ KK++ + T E + EL D
Sbjct: 526 NGGVMDNDEESITNKLKKVIDIISSKSSNPTLTEATFRKFAELND 570
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 28.7 bits (61), Expect = 7.9
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 559 NPLALKAVLDGSHSAYRINSP--TSRVQPRQLPVHKKSLFDGLEESDSSLEDK 609
NP K + D H+ Y SP TS V +LP+ KK + + S+ LE K
Sbjct: 207 NPFLKKIIYDIHHNIYPSTSPNPTSPVTLNRLPLGKKDSYTLVIASNKLLEMK 259
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 7.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 1647 VLLDELLPDAVLNDDLQTVSRLLKTLEEAAERHEVADWESGGLALSHYIHVC 1698
++L ++ P ++ DD VS L+ L+ HE+ W+ + L +HVC
Sbjct: 290 LILLQVAPQSIKLDD---VSNLINHLDGVESVHELHIWQLSDVKLIATVHVC 338
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 28.7 bits (61), Expect = 7.9
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 559 NPLALKAVLDGSHSAYRINSP--TSRVQPRQLPVHKKSLFDGLEESDSSLEDK 609
NP K + D H+ Y SP TS V +LP+ KK + + S+ LE K
Sbjct: 207 NPFLKKIIYDIHHNIYPSTSPNPTSPVTLNRLPLGKKDSYTLVIASNKLLEMK 259
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.132 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,078,087
Number of Sequences: 5004
Number of extensions: 280957
Number of successful extensions: 843
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 65
length of query: 1803
length of database: 2,362,478
effective HSP length: 83
effective length of query: 1720
effective length of database: 1,947,146
effective search space: 3349091120
effective search space used: 3349091120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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