Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001818-TA|BGIBMGA001818-PA|IPR007230|Peptidase S59,
nucleoporin
(1803 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 1e-26
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24) 43 0.003
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.018
SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2) 36 0.23
SB_59450| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.40
SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 1.6
SB_48861| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 2.8
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 2.8
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05) 33 2.8
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79) 32 3.7
SB_43286| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 3.7
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09) 32 3.7
SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041) 32 4.9
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 32 4.9
SB_2750| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 4.9
SB_56224| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 6.4
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09) 31 6.4
SB_45152| Best HMM Match : DUF320 (HMM E-Value=2.9) 31 6.4
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 6.4
SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 6.4
SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011) 31 6.4
SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51) 31 6.4
SB_27985| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 8.5
SB_49479| Best HMM Match : R3H (HMM E-Value=0.0079) 31 8.5
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37) 31 8.5
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0) 31 8.5
>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1297
Score = 120 bits (289), Expect = 1e-26
Identities = 102/333 (30%), Positives = 122/333 (36%), Gaps = 28/333 (8%)
Query: 44 GGSFNSGATTS--SPFGGFKPA-TGSFGASTSTQPATGGGLFANNTSGGGLFGNPGPXXX 100
GG F + T S FG + TG FGA+ + TG GLF T G +FG P
Sbjct: 40 GGLFGNKTQTGFGSGFGTTQTTGTGLFGAAGTN---TGTGLFGGGTVTGSMFGQPASAAS 96
Query: 101 XXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXXXXXXXXXXXXX 160
T+T G GLFG TQ +FG
Sbjct: 97 TGFGGFGSTAGTNTGGLFGNTAASGTTT-GTGLFGQTQGA-AFGGTSTSGFGTSGSLFSA 154
Query: 161 XXXXXXXXPATGPGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQQPTGTGH----VKFNPV 216
G G A Q + G G G T+ G FG T TG +KF+ +
Sbjct: 155 PSTSTTGGSLFGGTTG--ATQSSLFGGTGT-GATTAFGGFGAAS-TATGQAGTPIKFSVI 210
Query: 217 VGTEVVMKNGTSQNINIKHHCITFMKEYEGKSLEELRLEDYMAGRKGSXXXXXXXXXXXX 276
GT+ V+KNG + N+N +H IT MKEYE KS EELR EDY GRK
Sbjct: 211 RGTDQVVKNGLTTNVNTQHQSITVMKEYETKSFEELRFEDYTLGRKSGATGATASTGGLF 270
Query: 277 XXENKPXXXXXXXXXXXXXXXXXXXXXXXANKPPAFGTSTAGSTLFNTTTTQ------AP 330
FGT G+T F T+TT
Sbjct: 271 SSTPATSASTGGLFGTTATSTGFGGTSAFGQSKTGFGT---GTTAFGTSTTAFGQQQTGG 327
Query: 331 AFGASTNTFGFGANTQNQST---GIFGAKPATG 360
FGAS FG NT ST G FG PA+G
Sbjct: 328 LFGASKPGGLFGTNTATTSTTGFGGFGTTPASG 360
Score = 82.6 bits (195), Expect = 3e-15
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 13/131 (9%)
Query: 842 IDAVSEDENVEPRDAPP--HPTGVKLTRPGYYTIPSLDDMINYMRPDGTCPVPHLTIGRK 899
++A + + D P P G+ LTRP YYT+PS++ + + + +G V IGR+
Sbjct: 698 VEAEGAADGGDEADGEPALEPCGIILTRPEYYTVPSIEQLNDMVDANGEVWVDDFVIGRE 757
Query: 900 NYGNVYYDSEIDVAGLDLDALVHFLNKEVIVYPEDSDKPPVGVGLNRRAIVTLDRVWPRD 959
YG V + + +VA L+LD E+ YP +KP VG LN++A +TL +VWP D
Sbjct: 758 GYGEVKFPGKTNVADLNLD--------EIDTYP---NKPEVGEELNKKAEITLIKVWPND 806
Query: 960 KTEKRLITEPD 970
KT + I P+
Sbjct: 807 KTTHKPIKTPE 817
Score = 52.0 bits (119), Expect = 4e-06
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 16/186 (8%)
Query: 1220 ILEPHISTL---LEWSTLSECAEDECPRLSLRPEPEARLAVLRDNLRHSSKHDYVVKFGV 1276
+L+ H+ L LE T S+ A D CP P P + ++ ++
Sbjct: 1118 MLKQHLQALEVELEHCTSSQ-ASDGCP--FFEPTPGTKALHRHADVAKKNQETQGSSSSR 1174
Query: 1277 SAAYCRE-VWRLCDALWGADL--ENGGIPGTDEQSIVNRHKKLLRWFEDAVAGVTDAELA 1333
A+ VW L ALWG DL ++ GT E + R+ L W +A E+
Sbjct: 1175 DVAFQHSLVWDLVVALWG-DLGDKDTASQGTYEHQVARRNA-LSHWLAEAAKDRVKVEVD 1232
Query: 1334 EPRGTELEDESDTHSARIWTLLLGGRTLEACKLARDSGDLNMAMLLAQAGGDAAYRGLVA 1393
+ ED D +A I++ L G + +A +LA+ GD +++LL+QA +A R L+
Sbjct: 1233 K---ANFED-GDYLNA-IFSHLTGQQISKASRLAQRHGDYRLSLLLSQAASSSAVRYLLQ 1287
Query: 1394 RQLAQW 1399
+QL+ W
Sbjct: 1288 KQLSDW 1293
Score = 44.8 bits (101), Expect = 6e-04
Identities = 55/188 (29%), Positives = 63/188 (33%), Gaps = 19/188 (10%)
Query: 53 TSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGNPGPX-XXXXXXXXXXXXX 111
T FG KP G FG +T+T TG G F + GGLFG
Sbjct: 325 TGGLFGASKPG-GLFGTNTATTSTTGFGGFGTTPASGGLFGQTATSQTGGLFGGTTTTQA 383
Query: 112 XXXXXXXXXXXXXNTSTAGGGLFG-------NTQATPSFGVK-PXXXXXXXXXXXXXXXX 163
T T G GLFG +Q + FG K
Sbjct: 384 GGLFGGGATGFGAATGTTGTGLFGQSTGFGQTSQQSSLFGNKLATSTTGFGATNTGGLLG 443
Query: 164 XXXXXPATG---PGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQQPTGTGHVKFNPVVGTE 220
PATG G G T GLF GNT A AFG + TG G F GT
Sbjct: 444 LSAQKPATGFGTTGLGTGTFGAGTTGTQGLF-GNT-ATAFG-KPATGLGTTGFG---GTG 497
Query: 221 VVMKNGTS 228
+ GT+
Sbjct: 498 TGLFGGTT 505
Score = 44.8 bits (101), Expect = 6e-04
Identities = 55/212 (25%), Positives = 69/212 (32%), Gaps = 23/212 (10%)
Query: 44 GGSF--NSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTS--GGGLFGNP---- 95
GG F N+ T+++ FGGF S G T + GGLF T+ GGLFG
Sbjct: 335 GGLFGTNTATTSTTGFGGFGTTPASGGLFGQTATSQTGGLFGGTTTTQAGGLFGGGATGF 394
Query: 96 GPXXXXXXXXXXXXXXXXXXXXXXXXXXXN---TSTAG------GGLFGNTQATPSFGVK 146
G N TST G GGL G + P+ G
Sbjct: 395 GAATGTTGTGLFGQSTGFGQTSQQSSLFGNKLATSTTGFGATNTGGLLGLSAQKPATGFG 454
Query: 147 PXXXXXXXXXXXXXXXXXXXXXPATG---PGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQ 203
AT P GL G +G GLFGG T G
Sbjct: 455 TTGLGTGTFGAGTTGTQGLFGNTATAFGKPATGL-GTTGFGGTGTGLFGGTTGLGTTTTG 513
Query: 204 QPTGTGHVKFNPVVGTEVVMKN--GTSQNINI 233
+G G F +G N G + N+ +
Sbjct: 514 LGSGLGGSMFGNTLGQPATGLNLGGVTNNLKL 545
Score = 35.5 bits (78), Expect = 0.40
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 313 GTSTAG-STLFNTTTTQAPAFG--ASTNTFGFGANTQNQSTGIFGAKPATG 360
GT G ST F T+ Q+ FG +T+T GFGA G+ KPATG
Sbjct: 402 GTGLFGQSTGFGQTSQQSSLFGNKLATSTTGFGATNTGGLLGLSAQKPATG 452
Score = 34.7 bits (76), Expect = 0.69
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 580 TSRVQPRQLPVHKKS-LFDGLEESDSSLEDKLCLKPSRKRLVLRARPADGQDEG 632
T++++PR + H + +FDGLEES S D + S K+LV+R R Q G
Sbjct: 562 TAKIKPRPISNHSMNKMFDGLEESGVS-PDTFVPRKSIKKLVIRNRNTPEQMSG 614
Score = 33.9 bits (74), Expect = 1.2
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 314 TSTAGSTLFNTTTTQAPA-FGASTNTFGFGANTQNQSTGIFGAKPATG 360
TS G TTTTQA FG GFGA T TG+FG G
Sbjct: 368 TSQTGGLFGGTTTTQAGGLFGGGAT--GFGAATGTTGTGLFGQSTGFG 413
Score = 31.1 bits (67), Expect = 8.5
Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 307 NKPPAFG-TSTAGSTLFN--TTTTQAPAFGAS--TNTFGFGANTQNQSTGIFGAKPATGA 361
N FG TS A LF T T FG + T T FGA N TG+FG TG+
Sbjct: 27 NTASPFGQTSAASGGLFGNKTQTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGS 86
>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
Length = 889
Score = 42.7 bits (96), Expect = 0.003
Identities = 44/195 (22%), Positives = 61/195 (31%), Gaps = 15/195 (7%)
Query: 27 PGGDHVVNKSLGMVMCGGGSFNSGATTSSP-FGGFKPATGSFGASTSTQPAT-------G 78
PG +K + + TTS FG P+ G FG+ST+T +T
Sbjct: 622 PGSGFFGSKFSSSTTAAPSATSQPTTTSGGLFGASAPSGGVFGSSTTTASSTTAQSSTSS 681
Query: 79 GGLFANNTSGGGLFGNPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQ 138
GG F + TS GGLFG+ ++S GGLFG+
Sbjct: 682 GGFFGSATSSGGLFGSASQPSTTSSGLFRSTTQPTTSSAVFGSQPLSSS---GGLFGSQP 738
Query: 139 ATPSFGVKPXXXXXXXXXXXXXXXXXXXXXPATGPGA----GLFAPQGNTMSGGGLFGGN 194
P+ G + FA T G G
Sbjct: 739 TNTGLFGSSSAPTSTSPFRGSVNTPAFGATPSFGSSSTQATSPFASTTGTTFGFGQAIST 798
Query: 195 TSAGAFGQQQPTGTG 209
++ FGQ + TG
Sbjct: 799 SAGSGFGQTSSSSTG 813
Score = 33.5 bits (73), Expect = 1.6
Identities = 42/174 (24%), Positives = 57/174 (32%), Gaps = 36/174 (20%)
Query: 53 TSSPFGGFKPATGSFGASTSTQPATGGGLFAN----------------NTSGGGLFGNPG 96
TS P +P++G ++S A G G F + T+ GGLFG
Sbjct: 598 TSQPQTTSQPSSGGLFGASSQASAPGSGFFGSKFSSSTTAAPSATSQPTTTSGGLFGASA 657
Query: 97 PXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXXXXXXXXX 156
P ++T+ GGLFG+ + PS
Sbjct: 658 PSGGVFGSSTTTASSTTAQSSTSSGGFFGSATSSGGLFGSA-SQPS-------------- 702
Query: 157 XXXXXXXXXXXXPATGPGAGLFAPQGNTMSGGGLFGGN-TSAGAFGQQQ-PTGT 208
P T + +F Q S GGLFG T+ G FG PT T
Sbjct: 703 TTSSGLFRSTTQPTT--SSAVFGSQ-PLSSSGGLFGSQPTNTGLFGSSSAPTST 753
>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 39.9 bits (89), Expect = 0.018
Identities = 26/51 (50%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 311 AFGTSTAGSTLFNTTTTQAPAFGAST---NTFGFGANTQNQSTGIFGAKPA 358
AFG A F ++TT AFGA T NTFG GA+TQN T FGA A
Sbjct: 767 AFGAPAASQNAFGSSTTSQNAFGAKTTAQNTFG-GASTQN--TFAFGASSA 814
Score = 37.5 bits (83), Expect = 0.098
Identities = 41/176 (23%), Positives = 55/176 (31%), Gaps = 8/176 (4%)
Query: 28 GGDHVVNKSLGMVMCGGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTS 87
G + + G G+F++ +T FG P SFG+ST+ Q A GG NT
Sbjct: 677 GASSLKQNTFGGQPTSQGAFDT-STNLGAFGAPTPTPSSFGSSTAPQTAFGGQGVPQNT- 734
Query: 88 GGGLFGNPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFG-NTQATPSFGVK 146
G FG P A FG +T + +FG K
Sbjct: 735 -GNAFG--APAASQNAFGASAVPQSAFGAPAASQNAFGAPAASQNAFGSSTTSQNAFGAK 791
Query: 147 PXXXXXXXXXXXXXXXXXXXXXPATGPGAGLFAPQGNTMSGGGLFGGNTS-AGAFG 201
A G F+ GG FG ++S AFG
Sbjct: 792 -TTAQNTFGGASTQNTFAFGASSAVPKAFGRFSQASTPAPQGGGFGKSSSGTSAFG 846
Score = 34.7 bits (76), Expect = 0.69
Identities = 39/181 (21%), Positives = 57/181 (31%), Gaps = 9/181 (4%)
Query: 46 SFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGNPGPXXXXXXXX 105
+F + A + + FG + +FG+ST++Q A G A NT GG N
Sbjct: 757 AFGAPAASQNAFGAPAASQNAFGSSTTSQNAFGAKTTAQNTFGGASTQNTFAFGASSAVP 816
Query: 106 XXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSFGVKPXXXXXXXXXXXXXXXXXX 165
S++G FG+ A G +
Sbjct: 817 KAFGRFSQASTPAPQGGGFGKSSSGTSAFGS--AAAGSGSQGPFASTSVGGQGIFGAAKP 874
Query: 166 XXXPATGPGAGLFA---PQGNTMSGGGL-FGGNTSAGA---FGQQQPTGTGHVKFNPVVG 218
P P AG F+ P + GG FG + A + FG P + G
Sbjct: 875 APQPTPAPTAGGFSFGNPAAPAATTGGFKFGASLPAPSGFTFGSTSPAAPAFGQLATAAG 934
Query: 219 T 219
T
Sbjct: 935 T 935
>SB_24255| Best HMM Match : Herpes_PAP (HMM E-Value=2)
Length = 919
Score = 36.3 bits (80), Expect = 0.23
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 169 PATGPGAGLFAPQGNTMSGGGLFGGNTSAGAFG 201
P GPG G + NT SGGG +GG G +G
Sbjct: 482 PGQGPGGGASSTAFNTESGGGAYGGRGGRGIYG 514
>SB_59450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 35.5 bits (78), Expect = 0.40
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 313 GTSTAG-STLFNTTTTQAPAFG--ASTNTFGFGANTQNQSTGIFGAKPATG 360
GT G ST F T+ Q+ FG +T+T GFGA G+ KPATG
Sbjct: 32 GTGLFGQSTGFGQTSQQSSLFGNKLATSTTGFGATNTGGLLGLSAQKPATG 82
>SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 33.5 bits (73), Expect = 1.6
Identities = 35/159 (22%), Positives = 44/159 (27%), Gaps = 6/159 (3%)
Query: 43 GGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFA---NNTSGGGLFGNPGPXX 99
GG + G TT +P G G+ A T A GG A + GG PG
Sbjct: 702 GGTTAAPGGTTVAPGGTTAAPGGTTAAQGGTTVAPGGTTAAPGGTTAAPGGTTAAPGGTT 761
Query: 100 XXXXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLF---GNTQATPSFGVKPXXXXXXXXX 156
T+ A GG G T A P
Sbjct: 762 AAPGGTTAAPGGTTAAPGGTTTAPGGTTAAPGGTTAAPGGTTAAPGGTTAAPGGTTAAPG 821
Query: 157 XXXXXXXXXXXXPATGPGAGLFAPQGNTMSGGGLFGGNT 195
PA + +P GN S G F G++
Sbjct: 822 GTTTAPEGTTAAPAATTESPTASPSGNGTSSSGGFTGDS 860
>SB_48861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 32.7 bits (71), Expect = 2.8
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 656 DRSADVNR-NKSTADTEENGDLHPDKHSRWINSPKISDLWTERDHKPDAQRTNRMYPDIE 714
D+ DV R N D + D PD + R+ P D D +PDA+R N PD
Sbjct: 9 DKEPDVKRRNDKEPDAKRRDDKGPDANIRYDKEP---DANRRYDKEPDAERGNDKEPDAN 65
Query: 715 KEVSEHISERR 725
+ + ++
Sbjct: 66 RRYDKEARRKQ 76
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 32.7 bits (71), Expect = 2.8
Identities = 45/178 (25%), Positives = 58/178 (32%), Gaps = 13/178 (7%)
Query: 37 LGMVMCGGGSFNSGAT---TSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFG 93
+G + GS GAT TSS G +T S G S +T +TGG + TS GG G
Sbjct: 497 VGYIKQVSGSAEGGATGNGTSSNGGTTGSSTTSSGESGTT--STGGNTGSGTTSSGGNTG 554
Query: 94 NPGPXXXXXXXXXXXXXXXXXXXXXXXXXXXNTS--TAGGGLFGNTQATPSFGVKPXXXX 151
+ G NT T GG+ + T S GV
Sbjct: 555 S-GTTSSGGNTGSGTTTGGVNTGSGTTTGGLNTGSGTTTGGVNSGSGTTTS-GVNTGSGT 612
Query: 152 XXXXXXXXXXXXXXXXXPATGPGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQQPTGTG 209
+G G NT SG G NT +G + T +G
Sbjct: 613 TTGGVNTGSGTTTGEVNTGSGTTTGGM----NTGSGTTTGGVNTGSGTTSESGTTTSG 666
Score = 31.5 bits (68), Expect = 6.4
Identities = 37/170 (21%), Positives = 54/170 (31%), Gaps = 7/170 (4%)
Query: 47 FNSGATTSSPFGGF-KPATGSF-GASTSTQPATGGGLFANNTSGGGLFGNPGPXXXXXXX 104
F+ A+ SS F G+ K +GS G +T ++ GG ++T+ G G
Sbjct: 486 FSQVASLSSQFVGYIKQVSGSAEGGATGNGTSSNGGTTGSSTTSSGESGTTSTGGNTGSG 545
Query: 105 XXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPSF--GVKPXXXXXXXXXXXXXXX 162
+ +T GG G+ T G
Sbjct: 546 TTSSGGNTGSGTTSSGGNTGSGTTTGGVNTGSGTTTGGLNTGSGTTTGGVNSGSGTTTSG 605
Query: 163 XXXXXXPATG---PGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQQPTGTG 209
TG G+G + NT SG G NT +G TG+G
Sbjct: 606 VNTGSGTTTGGVNTGSGTTTGEVNTGSGTTTGGMNTGSGTTTGGVNTGSG 655
>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
Length = 2293
Score = 32.7 bits (71), Expect = 2.8
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
Query: 591 HKKSLFDGLEESDSSLEDKLCLKPSRKRLVLRARPADGQDEGRTNRSFEQPSSGPGRTQD 650
+K S D EE+D +E+ S+ V + + N S + + GRT D
Sbjct: 312 NKNSNSDDTEENDDDIEEGRT-DDSKDDSVKFGEDNKERPDANKNDSLKSRDNKKGRTDD 370
Query: 651 SVDQVDRSADVNRNKSTADTEENGDLHPDKHSR-WINSPKISDLWTERDHKPDAQRTNRM 709
S + RS D + + + +++ DK R +N + +++ +PD + +
Sbjct: 371 SKNDSLRSRDDKKERPVVNRDDSQSSIDDKEKRPDVNKDESQRSRDDKEKRPDINKDDSQ 430
Query: 710 YPDIEKE 716
+KE
Sbjct: 431 RSRDDKE 437
>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
Length = 308
Score = 32.3 bits (70), Expect = 3.7
Identities = 50/202 (24%), Positives = 64/202 (31%), Gaps = 20/202 (9%)
Query: 36 SLGMVMCGGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGNP 95
+LG GG+ +G T PFG P F A +P G+ + GLF P
Sbjct: 24 TLGTGFSFGGT-TTGGTGPVPFGSSTPRASGFSA---IKPL---GIATTTANTSGLFATP 76
Query: 96 GPXXXXXXXXXXXXXXXXXXXXXXXXXXX--NTSTAGGGLFG--NTQATP---SFGVKPX 148
NTST+ FG +T + P SFG +P
Sbjct: 77 AATKTTTGISFGATGTQATSASTGLSFGQLGNTSTSTLTAFGQPSTTSAPTGISFG-QPT 135
Query: 149 XXXXXXXXXXXXXXXXXXXXPATGPGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQQPTGT 208
AT +GLF + T + G NTSA FG GT
Sbjct: 136 SSTGLSLGASSGLTLGGLQ--ATTTTSGLFGAKPATTTSSLFSGANTSALGFG---GLGT 190
Query: 209 GHVKFNPVVGTEVVMKNGTSQN 230
K T V GT +
Sbjct: 191 LGAKSTVATTTTVTGLGGTGSS 212
>SB_43286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 32.3 bits (70), Expect = 3.7
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 614 PSRKRLVLRARPADGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRNK--STADTE 671
P R R L AR G + GRTNR + + P R + Q DR+ V K T T+
Sbjct: 6 PKRSRR-LAARQVGGPNRGRTNR--DAAADAPVREMNITPQEDRAPQVRGRKRARTRITQ 62
Query: 672 ENGDLHPDKHSRWINSPKISDLWTERDHKPDAQRTNRMYPDIEKEVSEHISERRASWLST 731
N D S N+P+ D +D + +T I + V + + +R + LS
Sbjct: 63 TNDSNVSDIQSN--NTPQEKDSSNAQD---EIHQTPPSQVQIPESVIQEVVQRVTAELSK 117
Query: 732 KPL 734
+ L
Sbjct: 118 QLL 120
>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
Length = 944
Score = 32.3 bits (70), Expect = 3.7
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 614 PSRKRLVLRARPADGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRNK--STADTE 671
P R R L AR G + GRTNR + + P R + Q DR+ V K T T+
Sbjct: 6 PKRSRR-LAARQVGGPNRGRTNR--DAAADAPVREMNITPQEDRAPQVRGRKRARTRITQ 62
Query: 672 ENGDLHPDKHSRWINSPKISDLWTERDHKPDAQRTNRMYPDIEKEVSEHISERRASWLST 731
N D S N+P+ D +D + +T I + V + + +R + LS
Sbjct: 63 TNDSNVSDIQSN--NTPQEKDSSNAQD---EIHQTPPSQVQIPESVIQEVVQRVTAELSK 117
Query: 732 KPL 734
+ L
Sbjct: 118 QLL 120
>SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)
Length = 754
Score = 31.9 bits (69), Expect = 4.9
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 546 DSTTAAEDILKPTNPLA--LKAVLDGSHSAYRINSPTSRVQPRQLPVHKKSLFDGLEESD 603
++ T++E+ KP+ A ++A+ SA ++ + R R+ V K F EE+
Sbjct: 252 EAPTSSENSWKPSESEAERIQAISRKRGSAKEASTSSIRTIKRKDQVKKNISFSEDEENT 311
Query: 604 SSLEDKLCLKPSRKRLVLRARPADGQDEGRTNRSFEQPSSGPG 646
+ D PS++ L R R QD GR RS + S G G
Sbjct: 312 TDSSDDQ--HPSKRGLTGRLRSK--QDTGRARRSTTRNSQGEG 350
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 31.9 bits (69), Expect = 4.9
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 28 GGDHVVNKSLGMVMCGGGSFNSGATTSSPFGGFKPATGSFGASTSTQP-ATGGGLFANNT 86
GG G GGG+ G + GG ATG G +T ATGGG+ A
Sbjct: 71 GGGGATGGHGGATGGGGGATGDGGGATGGGGG---ATGGGGGATGGHGGATGGGVGATGG 127
Query: 87 SGGGLFGNPG 96
GG G+ G
Sbjct: 128 HGGATGGHGG 137
Score = 31.5 bits (68), Expect = 6.4
Identities = 23/55 (41%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 43 GGGSFNSGATTSSPFGGFKPATGSFGASTSTQ-PATGGGLFANNTSGGGLFGNPG 96
GGG+ GAT GG ATG G +T ATGGG A GG G G
Sbjct: 53 GGGATGGGAT-----GGGGGATGGGGGATGGHGGATGGGGGATGDGGGATGGGGG 102
>SB_2750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 31.9 bits (69), Expect = 4.9
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 614 PSRKRLVLRARPADGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRNK--STADTE 671
P R R L AR G + GRTNR + + P R + Q DR+ V K T T+
Sbjct: 6 PKRSRR-LAARQVGGPNRGRTNR--DAAADAPIREMNITPQEDRAPQVRGRKRARTRITQ 62
Query: 672 ENGDLHPDKHSRWINSPKISDLWTERDHKPDAQRTNRMYPDIEKEVSEHISERRASWLST 731
N D S N+P+ D +D + +T I + V + + +R + LS
Sbjct: 63 TNDSNVSDIQSN--NTPQEKDSSNAQD---EIHQTPPSQVQIPESVIQEVVQRVTAELSK 117
Query: 732 KPL 734
+ L
Sbjct: 118 QLL 120
>SB_56224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 31.5 bits (68), Expect = 6.4
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 43 GGGSFNSGATTSSPFGG---FKPATGSFGASTSTQPATGGGLFANNTSGG 89
GGG +G +T + GG +TGS G++ ++ +GGG+ + +S G
Sbjct: 195 GGGVGTTGGSTGAAGGGGGGTSTSTGSSGSTGTSMVTSGGGISTSGSSSG 244
>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
Length = 969
Score = 31.5 bits (68), Expect = 6.4
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 614 PSRKRLVLRARPADGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRNK--STADTE 671
P R R L AR G + GRTNR + + P R + Q DR+ V K T T+
Sbjct: 6 PKRSRR-LAARQVGGPNRGRTNR--DAAADAPVREMNITPQEDRAPQVRGRKRARTRITQ 62
Query: 672 ENGDLHPDKHSRWINSPKISDLWTERDHKPDAQRTNRMYPDIEKEVSEHISERRASWLST 731
N D S N+P+ D +D + +T I + V + + +R + LS
Sbjct: 63 TNDSNVLDIQSN--NTPQEKDSSNAQD---EIHQTPPSQVQIPESVIQEVVQRVTAELSK 117
Query: 732 KPL 734
+ L
Sbjct: 118 QLL 120
>SB_45152| Best HMM Match : DUF320 (HMM E-Value=2.9)
Length = 293
Score = 31.5 bits (68), Expect = 6.4
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 28 GGDHVVNKSLGMVMCGGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGG-----GLF 82
GG+ + S V GGG F + ++ S FGG G G GG G+
Sbjct: 167 GGNGATSTSSSHVGGGGGGFYTDGSSGSNFGG-AYGPGGEGGKAFLNGGVGGRSVWNGVP 225
Query: 83 ANNTSGGGLFGNPG 96
GGG++GN G
Sbjct: 226 GGFGGGGGVWGNGG 239
>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 31.5 bits (68), Expect = 6.4
Identities = 19/55 (34%), Positives = 22/55 (40%)
Query: 43 GGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGGGLFGNPGP 97
GGG +G + GG G GA+ ATGGG GG G GP
Sbjct: 304 GGGGGATGVGGGATGGGGGATGGGVGATGGGGGATGGGGGVTGGGGGATGGGGGP 358
Score = 31.1 bits (67), Expect = 8.5
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 28 GGDHVVNKSLGMVMCGGGSFNSGATTSSPFGGFKPATGSFGASTSTQP-ATGGGLFANNT 86
GG + N + GGG+ G + GG ATG G +T ATGGG A
Sbjct: 228 GGSRLSNDRSNGRLGGGGATGGGGGATGGGGG---ATGGGGGATGGGGGATGGGGGATGG 284
Query: 87 SGGGLFGNPG 96
GG G G
Sbjct: 285 GGGATGGGGG 294
>SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 31.5 bits (68), Expect = 6.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 637 SFEQPSSGPGRTQDSVDQVDRSADVNRNKSTADTEENGDLHPDKHS 682
S+ + + P TQD V+ D S DT G HP +H+
Sbjct: 418 SYNKSRTAPNSTQDEVNIDDNKGKSCPQLSACDTRSRGSSHPSEHA 463
>SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)
Length = 782
Score = 31.5 bits (68), Expect = 6.4
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 43 GGGSFNSGATTSSPFGG---FKPATGSFGASTSTQPATGGGLFANNTSGG 89
GGG +G +T + GG +TGS G++ ++ +GGG+ + +S G
Sbjct: 241 GGGVGTTGGSTGAAGGGGGGTSTSTGSSGSTGTSMVTSGGGISTSGSSSG 290
>SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)
Length = 567
Score = 31.5 bits (68), Expect = 6.4
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 44 GGSFNSGATTSSPFGGFKPATG-SFGAST-STQPATGG-GLFANNT---SG---GGLFGN 94
G F + AT++ FG F A+G + G ST STQ + GG G A T SG G LFGN
Sbjct: 13 GSVFGTPATSAPTFGAFGAASGTNTGVSTPSTQFSFGGFGSAAKPTTTASGFGTGSLFGN 72
Query: 95 PG 96
G
Sbjct: 73 TG 74
>SB_27985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 31.1 bits (67), Expect = 8.5
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 614 PSRKRLVLRARPADGQDEGRTNRSFEQPSSGPGRTQDSVDQVDRSADVNRNK--STADTE 671
P R R L ARP G GRTNR+ + P + + Q DR+ V K T T+
Sbjct: 137 PKRSRR-LAARPVGGPKRGRTNRN--AAADAPVKETNITPQEDRTPQVRGRKRARTRITQ 193
Query: 672 ENGDLHPDKHSRWINSPKISDLWTERD---HKPDAQ 704
N D S N+P D +D H P +Q
Sbjct: 194 TNDSDVSDIQSN--NTPLEKDSSNAQDEIHHTPPSQ 227
>SB_49479| Best HMM Match : R3H (HMM E-Value=0.0079)
Length = 605
Score = 31.1 bits (67), Expect = 8.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 323 NTTTTQAPAFGASTNTFGFGANTQNQSTGIFGAKPAT 359
+T T A G ST+T+G +T+ QST + G +T
Sbjct: 425 STETQSTSAEGQSTSTYGQSTSTEEQSTSVEGQSTST 461
>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
Length = 732
Score = 31.1 bits (67), Expect = 8.5
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 1/101 (0%)
Query: 43 GGGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGG-GLFANNTSGGGLFGNPGPXXXX 101
GG S +S P GG +P++ G S A+ G +++S + NP
Sbjct: 305 GGSSGFDAFGSSPPSGGIQPSSSQGGIFGSPLSASNSFGPMISSSSTAPISSNPPEDKYS 364
Query: 102 XXXXXXXXXXXXXXXXXXXXXXXNTSTAGGGLFGNTQATPS 142
+ST GG +FG++ ++ S
Sbjct: 365 ALSALDTLFGPSSNAGGTVSSSMPSSTGGGSVFGSSTSSSS 405
>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1885
Score = 31.1 bits (67), Expect = 8.5
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 1007 DVMDTAEDNAE-SQSLFLENRAFGVKSPTSELARLENRRSHSVQLMKASLYPDEEMD-DD 1064
D+ + A D E S+S LE A G E L+ +S S Q + DEE+D DD
Sbjct: 1745 DLKEPALDTRERSKSEILERPASG--EAVLEPTELDKEKSSSAQNIVEQALQDEELDEDD 1802
Query: 1065 VSVSTGEQLVPNSAPIFNDQ 1084
V EQ + + + DQ
Sbjct: 1803 TIVRVVEQEIAEAFDLSTDQ 1822
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.132 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,357,441
Number of Sequences: 59808
Number of extensions: 2141321
Number of successful extensions: 5683
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5429
Number of HSP's gapped (non-prelim): 248
length of query: 1803
length of database: 16,821,457
effective HSP length: 93
effective length of query: 1710
effective length of database: 11,259,313
effective search space: 19253425230
effective search space used: 19253425230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 67 (31.1 bits)
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