GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001818-TA|BGIBMGA001818-PA|IPR007230|Peptidase S59,
nucleoporin
         (1803 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          27   1.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    27   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   5.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   5.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   7.4  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 220 EVVMKNGTSQNINIKHHCITFMKEYEG 246
           E+V++ GT  N+ +K +CI     Y G
Sbjct: 309 EIVLEPGTGINVTLKGYCIDMEVPYSG 335


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 899 KNYGNVYYDSEIDVAGLDLDALVHFLNKEVIVYPEDSDKPPVGVGLNRRAIVTLDRVWPR 958
           KN    + D  ID  G  +DA+ H      I      D+PP+G  LN     +L+    +
Sbjct: 213 KNIMKFWLDKGID--GFRIDAVPHLFESANI----SLDEPPLGKNLNLSLHASLNHTLTK 266

Query: 959 DKTE 962
           D+ E
Sbjct: 267 DQPE 270


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 181 QGNTMSGGGLFGGNTSAGAFGQQQPTGT 208
           +G T+SGGG+ GG    G    QQP  T
Sbjct: 961 EGQTVSGGGM-GGCQPGGVVQSQQPIMT 987


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 1509 LIRARAFNQRPKLKPAAYTPDPNDFTLCFLLGAW 1542
            ++  R   Q P + PAA    PN  TL   L  W
Sbjct: 1489 VLSVRTQGQAPGIPPAATFLSPNSTTLVLRLHVW 1522


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 1509 LIRARAFNQRPKLKPAAYTPDPNDFTLCFLLGAW 1542
            ++  R   Q P + PAA    PN  TL   L  W
Sbjct: 1485 VLSVRTQGQAPGIPPAATFLSPNSTTLVLRLHVW 1518


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
          isoform protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 29 GDHVVNKSLGMVMCGGGSFNS-GATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTS 87
          G  VV  ++  V+ G  S     A T     G    T +  A+T T P+   G     T+
Sbjct: 12 GVGVVGGTIASVVAGAASLTLVKAETPEHLAG----TSTTAAATPTPPSVPVGSAVAGTA 67

Query: 88 GGGLF 92
          GG LF
Sbjct: 68 GGALF 72


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,985
Number of Sequences: 429
Number of extensions: 17978
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 8
length of query: 1803
length of database: 140,377
effective HSP length: 68
effective length of query: 1735
effective length of database: 111,205
effective search space: 192940675
effective search space used: 192940675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)