Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001817-TA|BGIBMGA001817-PA|IPR007087|Zinc finger,
C2H2-type, IPR012934|Zinc finger, AD-type
         (622 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    32   0.016
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.35 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   2.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   2.4  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              24   3.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   4.3  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              23   7.5  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 31.9 bits (69), Expect = 0.016
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 178 CDACRVWFVDSIEAARHKQLHTSGSLPYKCHRCTAEY 214
           CD C   F  S +  RH ++HT G  P+KC  C+  +
Sbjct: 150 CDVCERAFEHSGKLHRHMRIHT-GERPHKCTVCSKTF 185


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 0.35
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 327 VKTEPVLKNDNMVNITQDITDVFDSDTEISRWDSDNNSNGTSKVKTSN 374
           V ++    +DNM+ IT ++  +  S + +     +NNS G S   +S+
Sbjct: 357 VSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSH 404


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 25/167 (14%)

Query: 320 YSARSIRVKTEPVLKNDNMVNITQDITDVFDSDTEISRWDSDNNSNGTSKVKTSNLTAKP 379
           YS+    + TEP L ++      ++I +  ++D +  +W   NN       K S L A  
Sbjct: 346 YSSFGKILATEPTLFSNVTPKFPRNIDEYNNNDLDTKKW---NN-------KISALRALN 395

Query: 380 KLSNEIEAHGKSDAFDAANDSEFDISSNI----NCIIDGLDRD----EENRLVDDKEKSD 431
            L N        D+++ + +   +I+ NI    N IID  + D    EE R +++++ + 
Sbjct: 396 DLYN---VKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNR 452

Query: 432 AVIDFDCRSIDTDAGSLSLLDET---TKTMNDDAIVHNDELTDRNSD 475
               +    ID +   ++L   T   + T+ +  ++ N E+    SD
Sbjct: 453 MYKSYP-NYIDKETKDMNLEISTRPKSNTVENACVLKNTEIFKDKSD 498


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 486 SVISEKDTNEVELS----VNENSAMITCNGAVTDSSTGIDSAVINS 527
           S+   K  N+V L+    VN NS     N +  DSS  I+S  ++S
Sbjct: 520 SLAVAKQQNQVPLTSSSNVNNNSGNGNTNSSARDSSPAIESISVDS 565


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 11/45 (24%), Positives = 26/45 (57%)

Query: 479 FDNGVDVSVISEKDTNEVELSVNENSAMITCNGAVTDSSTGIDSA 523
           +D+G + + +  ++  E+ L  NE + +IT   A++D+   + S+
Sbjct: 73  YDDGGNFNEVVVREIAEIYLDENEVNKLITECSAISDADIHLKSS 117


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 201 GSLPYKCHRCTAEYKLVTTYDEHFKNDCIPFDEVPDVKCEDC 242
           GS P+KC +C+      +  + H K+       V   +C +C
Sbjct: 13  GSKPFKCEKCSYSCVNKSMLNSHLKS----HSNVYQYRCANC 50


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 479 FDNGVDVSVISEKDTNEVELSVNENSAMITCNGAVTDSSTGIDSA 523
           +D+G + + +  ++  E+ L  N  + +IT   A++D+   + SA
Sbjct: 73  YDDGGNFNEVVIREIAEIFLDENGVNKLITECSAISDADLAVKSA 117


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,570
Number of Sequences: 429
Number of extensions: 6739
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 622
length of database: 140,377
effective HSP length: 62
effective length of query: 560
effective length of database: 113,779
effective search space: 63716240
effective search space used: 63716240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)