Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001817-TA|BGIBMGA001817-PA|IPR007087|Zinc finger,
C2H2-type, IPR012934|Zinc finger, AD-type
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 50 1e-06
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 37 0.007
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 34 0.051
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 34 0.051
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 31 0.36
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 30 0.83
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 30 0.83
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 30 1.1
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 29 1.5
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.5
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 29 2.5
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 29 2.5
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 28 3.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 5.9
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 27 5.9
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 5.9
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 5.9
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 27 7.7
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos... 27 7.7
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 27 7.7
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 7.7
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 49.6 bits (113), Expect = 1e-06
Identities = 47/244 (19%), Positives = 101/244 (41%), Gaps = 5/244 (2%)
Query: 359 DSDNNSNGTSKVKTSNLTAKPKLSNEIEAHGK-SDAFDAANDSEFDISSNINCIIDGLDR 417
+SD++S+ + N ++ +E E+ + SD+ +++DSE + SS +
Sbjct: 111 ESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSS 170
Query: 418 DEENRLVDDKEKSDAVIDFDCRSIDTDAGSLSLLDETTKTMNDDAIVHNDELTDRNSDSA 477
E +D + S + D + S D+ S S ++ + + + + S+S+
Sbjct: 171 SESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESS 230
Query: 478 QFDNGVDVSVISEKDTNEVELSVNENSAMITCNGAVTDSSTGIDSAVINSKVYEKSNSFD 537
DN D S S +E E S ++ + + + + ++SS+ + NS E +S D
Sbjct: 231 SEDN--DSS--SSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSD 286
Query: 538 IETLLNKTXXXXXXXXXXRNASPFAQQIGDNQFEINEKTDCEVTGEPEHCSKSADQNDKI 597
+++ + S + D + T EV+ + S S++++ +
Sbjct: 287 SSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSV 346
Query: 598 NIED 601
ED
Sbjct: 347 KDED 350
Score = 44.0 bits (99), Expect = 6e-05
Identities = 54/274 (19%), Positives = 112/274 (40%), Gaps = 12/274 (4%)
Query: 342 TQDITDVFDSDTEISRWDSDNNSNGTSKVKTSNLTAKPKLSNEIEAHGKSDAFDAANDSE 401
+ D +D S++E S DN+S+ +S S +++ S+ + +S++ +DS
Sbjct: 108 SSDESDSSSSESESS--SEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSS 165
Query: 402 FDISSNINCIIDGLDRDEENRLVDDKEKSDAVIDFDCRSIDTDAGSLSLLDETTKTMNDD 461
SS+ D D + D + +S + D D S +D+ S S + + + +
Sbjct: 166 -SSSSSSESESSSEDNDSSSSSSDSESESSSE-DSDSSSSSSDSESESSSEGSDSSSSSS 223
Query: 462 AIVHNDELTDRNSDSAQFDNGVDVSVISEKDTNEVELSVNENSAMITCNGAVTDSSTGID 521
+ D +S S+ D+ + S + D++ S+ + + S + D
Sbjct: 224 SSESESSSEDNDSSSSSSDSESE-SSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDD 282
Query: 522 SAVINSKVYEKSNSFDIETLLNKTXXXXXXXXXXRNASPFAQQIGDNQFEINEKTDCEVT 581
S+ +S +S+S D ++ + + N++ G E++ ++ T
Sbjct: 283 SSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSG----EVSAQSSTNST 338
Query: 582 GEPEHCSKSADQNDKINIEDLLDGKRMELDDTSN 615
E S + + KI+ + L KR DD S+
Sbjct: 339 SSEESTSVKDEDSSKIHDKSL---KRKHEDDESS 369
Score = 39.9 bits (89), Expect = 0.001
Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 24/201 (11%)
Query: 335 NDNMVNITQDITDVFDSDTEISRWDSDNNSNGTSKVKTSNLTAKPKLSNEIEAHGK-SDA 393
ND+ + + ++ D++ S SD+ S +S+ S+ ++ S+E E+ + +D+
Sbjct: 180 NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSS---SSESESSSEDNDS 236
Query: 394 FDAANDSEFDISSNINCIIDGLDRDEENRLVDDKEKSDAVIDFDCRSIDTDAGSLSLLDE 453
+++DSE + SS +D + S + D + S D+ S S +
Sbjct: 237 SSSSSDSESESSS------------------EDSDSSSSSSDSESESSSKDSDSSSNSSD 278
Query: 454 TTKTMNDDAIVHNDELTDRNSDSAQFDNGVDVSVISEKDTNEVELSVN-ENSAMITCNGA 512
+ + D+ E + +SDS + D S SE + + + + E SA + N
Sbjct: 279 SEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNST 338
Query: 513 VTDSSTGIDSAVINSKVYEKS 533
++ ST + +SK+++KS
Sbjct: 339 SSEESTSVKDE-DSSKIHDKS 358
Score = 39.1 bits (87), Expect = 0.002
Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 9/199 (4%)
Query: 335 NDNMVNITQDITDVFDSDTEISRWDSDNNSNGTSKVKTSNLTAKPKLSNEIEAHGK-SDA 393
ND+ + + ++ D++ S SD+ S +S+ S+ ++ S+E E+ + +D+
Sbjct: 126 NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSS---SSESESSSEDNDS 182
Query: 394 FDAANDSEFDISS-NINCIIDGLDRDEENRLV-DDKEKSDAVIDFDCRSIDTDAGSLSLL 451
+++DSE + SS + + D + E+ D S + + + S D D+ S S
Sbjct: 183 SSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSD 242
Query: 452 DETTKTMND---DAIVHNDELTDRNSDSAQFDNGVDVSVISEKDTNEVELSVNENSAMIT 508
E+ + D + + E + DS N D S D+++ E + + T
Sbjct: 243 SESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDST 302
Query: 509 CNGAVTDSSTGIDSAVINS 527
+ + +DSS+ + N+
Sbjct: 303 SSSSDSDSSSSSEDGNSNT 321
Score = 33.1 bits (72), Expect = 0.12
Identities = 48/251 (19%), Positives = 98/251 (39%), Gaps = 16/251 (6%)
Query: 359 DSDNNSNGTSKVKTSNLTAKP-KLSNEIEAHG------KSDAFDAANDSEFDISSNINCI 411
+S SN S+ K S A P K + EA G +SD+ + ++S + + + +
Sbjct: 74 ESLEKSNDDSQ-KISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSS 132
Query: 412 IDGLDRDEENRLVDDKEKSDAVIDFDCRSIDTDAGSLSLLDETTKTMNDDAIVHNDELTD 471
D SD+ + D+ + S S E++ ND + +D ++
Sbjct: 133 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 192
Query: 472 RNSDSAQFDNGVDVSVISEKDTNEVELSVNENSAMITCNGAVTDSSTGIDSAVINSKVYE 531
+S+ + S S D+ S +S+ + + SS DS+ +S
Sbjct: 193 SSSEDSD-------SSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSES 245
Query: 532 KSNSFDIETLLNKTXXXXXXXXXXRNASPFAQQIGDNQFEINEKTDCEVTGE-PEHCSKS 590
+S+S D ++ + + ++S + D+ + ++ E + E + S S
Sbjct: 246 ESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSS 305
Query: 591 ADQNDKINIED 601
+D + + ED
Sbjct: 306 SDSDSSSSSED 316
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 37.1 bits (82), Expect = 0.007
Identities = 33/176 (18%), Positives = 76/176 (43%), Gaps = 3/176 (1%)
Query: 330 EPVL-KNDNMVNITQDITDVFDSDTEISRWDSDNNSNGTSKVKTSNLTAKPKLSNEIEAH 388
EP + K + V+ T +I++ ++ S + + S+ + ++ + K L ++E
Sbjct: 383 EPAVGKGASDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEK 442
Query: 389 GKSDAFDAANDSEFDISSNINCIIDGLDRDE--ENRLVDDKEKSDAVIDFDCRSIDTDAG 446
+ +E D+ + I+ D+DE +++ +DK + + D ++ +TD+
Sbjct: 443 DTKITNEDTGKTETDVKAKETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSI 502
Query: 447 SLSLLDETTKTMNDDAIVHNDELTDRNSDSAQFDNGVDVSVISEKDTNEVELSVNE 502
+ +E T + V + D N A+ DN + D+ +V+ + E
Sbjct: 503 EVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEKAEKVDSKDVKEKIEE 558
Score = 35.1 bits (77), Expect = 0.029
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 24/188 (12%)
Query: 366 GTSKVKTSNLTAKPKLSNEIEAH-----------GKSDAFDAANDSEFDISSNINC---I 411
G+S K+ LT++PK S +EA G SD D A SE + N + +
Sbjct: 355 GSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGASDVSDTAEISEKTEAKNADSEANL 414
Query: 412 IDGLDRDEENRLVDDKEKSDAVIDFDCRSIDTDAGSLSLLDETTKTMNDDAIVHNDELTD 471
+ D EE D+ K+ D + + + K D+I ND+ D
Sbjct: 415 EEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKETDSIEANDK--D 472
Query: 472 RNSDSAQFDNGVDVSVISE-----KDTNEVELSVNENSAMITCNGAVTDSSTGIDSAVIN 526
+DS + ++ V+ + E K+T+ +E+ E T + D DS N
Sbjct: 473 EKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETADKVEQTDSKDTN 529
Query: 527 SKVYEKSN 534
K + N
Sbjct: 530 EKPAKDDN 537
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 34.3 bits (75), Expect = 0.051
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Query: 123 CRVTRSSLNGEHIEKQALKQLKCDSDEDSLLV-------PRVKRIREVKLDIFPKSKKVR 175
C+ + S I + + L C + D V R+ R V+ I
Sbjct: 413 CKTRKQSTRICRIPPETMASLYCGPEADGKYVCLYNGCNKRIARKYNVESHIQTHLSDRP 472
Query: 176 LACDACRVWFVDSIEAARHKQLHTSGSLPYKCHRCTAEYKLVTTYDEH-FKNDCI 229
CD C+ FV + RH ++H +G PY C C + + + H +N C+
Sbjct: 473 YRCDLCKAGFVRHHDLKRHLRIHENGR-PYVC-ECLKRFNRLDALNRHKQRNICV 525
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 34.3 bits (75), Expect = 0.051
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 178 CDACRVWFVDSIEAARHKQLHTSGSLPYKCHRCTAEYKLVTTYDEHFKND 227
C C+ F + RH+QLHT G + C C + + + H+K++
Sbjct: 602 CSICKKSFARQHDKRRHEQLHT-GIKAFACVTCNQRFARMDALNRHYKSE 650
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 31.5 bits (68), Expect = 0.36
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 447 SLSLLDETTKTMNDDAIVHNDELTDRNSDSAQFDNGVDVSVISEKDTNEVELSVNENSAM 506
SL+ L+ K + +D + ++L +N+D+ F N + + +S+K N+ L N+ + +
Sbjct: 744 SLAALESKNKKLENDLNLLTEKLNKKNADTESFKNTIREAELSKKALND-NLG-NKENII 801
Query: 507 ITCNGAVTDSSTGIDSAVINSKVYEKSNSFDIETL 541
+++ ST + + S++ + N IETL
Sbjct: 802 SDLKNKLSEESTRLQE--LQSQLNQDKN--QIETL 832
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 30.3 bits (65), Expect = 0.83
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 176 LACDACRVWFVDSIEAARHKQLHTSGSLPYKCHRCTAEYKLVTTY 220
L CD C WF + + + ++ Y C +CT E K +TT+
Sbjct: 133 LGCDGCEDWFHGT--CVNIPESYNDLTVQYFCPKCTEEGKGITTW 175
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 30.3 bits (65), Expect = 0.83
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 485 VSVISEKDTNEVELSVNENSAMITCNGAVTDSSTGIDS 522
+ ++S+KDT + LSV N M T + VT T I++
Sbjct: 538 IDILSKKDTKQYHLSVILNDLMATSSDVVTQQVTTINN 575
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 29.9 bits (64), Expect = 1.1
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 438 CRSIDTDAGSL--SLLDETTKTMNDDAIVHNDELTDRNSDSAQFDNGVDVSVISEKDTNE 495
C+ + T GS+ S+L +TT I+ N L + D V S K
Sbjct: 278 CQKLSTACGSIACSMLTKTTPHRASVDILSN--LHESTVSPPMADESVQRSSEVSKSIPN 335
Query: 496 VELSVNENSAMITCNGAVTDS-----STGIDSAVINSKVYEKSN 534
VELS+N N ++ G TDS TG+DS E S+
Sbjct: 336 VELSLNVNQQFVSPFGG-TDSFPLPTDTGLDSLFEPDSAIENSH 378
>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 29.5 bits (63), Expect = 1.5
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 416 DRDEENRLVDDKEKSDAVIDFDCRSIDTDAGSLSLLD---ETTKTM--------NDDAIV 464
D E LV + EK+D + D+D + +D D L + D + T TM D +
Sbjct: 94 DTPEVLNLVFESEKNDRISDYDVKLMDIDQEHLGIPDIEYDATITMPAAEFQRITRDLLT 153
Query: 465 HNDELT-DRNSDSAQFDNGVDVSVISEKDTNEVELSVNENSAMITCNGAVT 514
+D +T + + + +F D+ S +LS + S I+ AVT
Sbjct: 154 LSDSVTINASKEGVRFSCKGDIGNGSTTLKQHTDLSDQDQSIEISLTQAVT 204
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 337 NMVNITQDITDVFDSDTEISRWDSDNNSNGTSKVKTSNLTAKPKL 381
++ N T++ T +FDS +R DS++ S K+ + ++ KL
Sbjct: 205 SLTNATKNYTHIFDSLLTFTRHDSEDVSTSVEKLTSKKISELEKL 249
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 469 LTDRNSDSAQFDNGVDVSVISEKDTNEVELSVNENSAMITCN 510
L D S + F+N ++S I+ T+ + LSV+E I CN
Sbjct: 42 LKDNTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCN 83
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 333 LKNDNMVNITQDITDVFDSDTEISRWDSDNNS--NGTSKVKTSNLTAKPKL 381
L +++++ +D +V + D E ++DN + NG V + KPK+
Sbjct: 731 LLRQSIIHVERDDIEVEEDDAEAQELENDNTNTTNGNDNVSSEEALQKPKV 781
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 28.3 bits (60), Expect = 3.4
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 524 VINSKVYEKSNSFDIETLLNKTXXXXXXXXXXRNASPFAQQIGDNQFEINEKTDCEVTGE 583
+ N+ V+E D ETLLN P + D E+ + D +
Sbjct: 505 IFNNLVHETDTETDSETLLNDLDLLHVIYDFFMEMEP----VSDVALELVKIADKLLRVA 560
Query: 584 PEHCS-KSADQNDKINIEDLLDGKRMELDDTSNDDFN 619
E CS K+ D D +D+++G EL+D ++ DF+
Sbjct: 561 KEVCSAKNNDVTDS-TFKDIVEG--FELNDLNSWDFD 594
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 5.9
Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 8/131 (6%)
Query: 398 NDSEFDISSNINCIIDGLDRDEENRLVDDKEKSDAVIDF-----DCRSIDTD--AGSLSL 450
++ E D+S + + ++ +EN+ D EK + + DF + ++D D S
Sbjct: 4093 DEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDFEDPLEENNTLDEDIQQDDFSD 4152
Query: 451 LDETTKTMNDDAIVHN-DELTDRNSDSAQFDNGVDVSVISEKDTNEVELSVNENSAMITC 509
L E + MN+D N E + D + D ++ + E + ++ S +
Sbjct: 4153 LAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASA 4212
Query: 510 NGAVTDSSTGI 520
++ GI
Sbjct: 4213 EADEENTDKGI 4223
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 359 DSDNNSNGTSKVKTSNLTAKP-KLSNEIEAHGKSDAFDAANDSEFDISSN 407
+S + +N +K S + P K +N E HG D F A D I+S+
Sbjct: 60 ESTSKNNAKEYMKLSKVIVHPYKDANVFEEHGIQDIFAALRDQTAAIASD 109
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.5 bits (58), Expect = 5.9
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 335 NDNMVNITQ--DITDVFDSDTEISRWDSDNNSNGTSKVKTSNL----TAKPKLSNEIEAH 388
ND+ +T D + DS++EI DSD++ S K NL + + + EA
Sbjct: 186 NDSESELTDSADNMNESDSESEIESSDSDHDDGENSDSKLDNLRNYIVSLNQKRKKDEAD 245
Query: 389 GKSDAFDAANDSEFDIS-SNINCIIDGLDRDEENRLVDDKEKSDAVID 435
+S NDS +IS + +++ E L+ EK+ + D
Sbjct: 246 AESVLSSDDNDSIEEISIKKVKYDPHETNKESEYNLIGSSEKTIDITD 293
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 441 IDTDAGSLSLLDETTKTMNDDAIVHNDE 468
I ++ G++ + D +TK + DD+I H+D+
Sbjct: 310 IPSEDGTIQITDPSTKIIIDDSIRHSDD 337
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 351 SDTEISRWDSDNNSNGTSKVKTSNLTAKPKL--SNEIEAHGKSDAFDA-ANDSEFDISSN 407
+DT++ DS++ ++ KT KPK N E KS D D + S
Sbjct: 71 TDTQLKGQDSNHKKASLTETKTEKAKVKPKAKKKNSKEKISKSSKQDEHKTDVHKESVSK 130
Query: 408 INCIIDGLDRDEENRLVDDKEKSDAV 433
++ ++ + +EN +K S V
Sbjct: 131 LSKNLESRNNRDENSAKREKNNSHQV 156
>SPCC645.11c |mug117||meiotically upregulated gene
Mug117|Schizosaccharomyces pombe|chr 3|||Manual
Length = 186
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 194 HKQLHTSGSLPYKCHRCTAEYKLVTTYDEHFKNDCI-PFDEVPDVKCEDC-WRYFATDN 250
++ L G Y CTA Y+ Y N+ I FD++ +++C C R+F DN
Sbjct: 94 NRSLIYHGYSSYTASSCTAIYECEGDYPARTGNEIIDEFDQL-NLQCSACGTRFFNNDN 151
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 7.7
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 406 SNINCIIDGLDRDEENRLVDDKEKSDAVI-DFDCRSIDTDAGSLSLLDETTKTMND-DAI 463
SN + I R ++ + KEK I D D D D S SL++ +++D I
Sbjct: 7 SNADYIAKKYLRKDQGKKKKKKEKDFVEIQDEDVAGWDDD-NSFSLVNRELTSLHDAPTI 65
Query: 464 VHNDELTDRNSDS 476
V N+ L DR+ D+
Sbjct: 66 VANESLKDRDIDA 78
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 178 CDACRVWFVDSIEAARHKQLHTSGSLPYKC-HR-CTAEYKLVTTYDEH 223
C +C + FV++ AA K TSG+ KC HR C + + D H
Sbjct: 235 CFSCLLRFVETPTAAEVKAAETSGTKIVKCGHRSCPICWDSIRLRDVH 282
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.132 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,076
Number of Sequences: 5004
Number of extensions: 122106
Number of successful extensions: 358
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 36
length of query: 622
length of database: 2,362,478
effective HSP length: 77
effective length of query: 545
effective length of database: 1,977,170
effective search space: 1077557650
effective search space used: 1077557650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)
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