GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001816-TA|BGIBMGA001816-PA|IPR001878|Zinc finger,
CCHC-type, IPR009007|Peptidase aspartic, catalytic
         (238 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.4  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 122 RSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGH 156
           RS E  Q T +   P+T E + A    Y CG   H
Sbjct: 511 RSDEGPQITEL--EPETIESQDAITRIYACGTMWH 543


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 122 RSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGH 156
           RS E  Q T +   P+T E + A    Y CG   H
Sbjct: 511 RSDEGPQITEL--EPETIESQDAITRIYACGTMWH 543


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 141 GKRAPVTCYKCGVE 154
           G   P TC  CGVE
Sbjct: 494 GFHNPFTCNMCGVE 507


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 208 DSGADCSLIKESVSRKLVGT 227
           D+G++ S I E V  KL+ T
Sbjct: 105 DTGSEVSCISEEVWSKLIET 124


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)

Query: 163 KTWSVASNSAQPT--VAPSI 180
           KTW V  +S  PT  V+P +
Sbjct: 107 KTWKVEEDSPSPTSSVSPEV 126


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.130    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,770
Number of Sequences: 317
Number of extensions: 2057
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 5
length of query: 238
length of database: 114,650
effective HSP length: 55
effective length of query: 183
effective length of database: 97,215
effective search space: 17790345
effective search space used: 17790345
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)