GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001816-TA|BGIBMGA001816-PA|IPR001878|Zinc finger,
CCHC-type, IPR009007|Peptidase aspartic, catalytic
         (238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    42   8e-05
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    31   0.11 
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    29   0.60 
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    28   1.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    28   1.4  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   2.4  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    27   3.2  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   3.2  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   5.6  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   7.4  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 106 CYACGKLGHKSNECFSRSHEKQ-----QTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASR 160
           CY C + GHK++EC     EK          +     ++   R    CYKCG  GH+A  
Sbjct: 38  CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARD 97

Query: 161 C 161
           C
Sbjct: 98  C 98



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 96  LPKLSSGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEG 155
           +P+ +    +CY CG+ GH++ EC   S          +  +  E ++   TCY CG  G
Sbjct: 9   VPQTTRPGPRCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEK-TCYACGTAG 67

Query: 156 HVASRC 161
           H+   C
Sbjct: 68  HLVRDC 73



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 9/58 (15%)

Query: 105 KCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCS 162
           +CY CG++GH + +C +     QQ+   F       G R+ + CY CG  GH A  C+
Sbjct: 84  ECYKCGRVGHIARDCRTNG---QQSGGRFG------GHRSNMNCYACGSYGHQARDCT 132



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 20/58 (34%)

Query: 105 KCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCS 162
           KCY+CGK+GH+S EC       QQ          ++G+     CYKC   GH+A  C+
Sbjct: 136 KCYSCGKIGHRSFEC-------QQ---------ASDGQ----LCYKCNQPGHIAVNCT 173



 Score = 29.1 bits (62), Expect = 0.60
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 136 PDTAEGKRAPVTCYKCGVEGHVASRCSK 163
           P   +  R    CY CG  GH A  C+K
Sbjct: 7   PTVPQTTRPGPRCYNCGENGHQARECTK 34


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVT--CYKCGVEGHVASRCSK 163
           C+ C   GH S +C    H    T       D     R P T  C  CG+ GH+A+RCS+
Sbjct: 89  CHNCKGNGHISKDC---PHVLCTTCGAI---DDHISVRCPWTKKCMNCGLLGHIAARCSE 142



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 142 KRAPVTCYKCGVEGHVASRCSKTW 165
           KR P  C  C  + H +S C   W
Sbjct: 145 KRGPRVCRTCHTDTHTSSTCPLIW 168


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIF-----EHPDTAEGKRAPV---TCYKCGVEGHV 157
           C+AC + GH   +C      K   +  F     EH   A  K+ P+    C+ C   GH+
Sbjct: 79  CFACRQQGHIVQDC---PEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHL 135

Query: 158 ASRCSK 163
           + +C +
Sbjct: 136 SGQCEQ 141



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 103 FTKCYACGKLGHKSNEC 119
           F KC+ C + GH S +C
Sbjct: 123 FAKCFICHENGHLSGQC 139


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 127 QQTTPIFEHPDTAEGKRAPVTCYKCGV 153
           Q+TT   EHPD+ EG +    CY C V
Sbjct: 323 QKTT--VEHPDSVEGIKNQNVCYGCSV 347


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 118  ECFSRSHEKQQTTPIFEHPDTA----EGKRAPV---TCYKCGVEGHVASRC 161
            E F R ++ +  +    +PDT      GK  PV   TCYKCG   H    C
Sbjct: 1769 ERFFRVYKDECLSCTLGNPDTEIRAHTGKACPVRLSTCYKCGKADHNLREC 1819



 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 106  CYACGKLGHKSNEC 119
            CY CGK  H   EC
Sbjct: 1806 CYKCGKADHNLREC 1819


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 118  ECFSRSHEKQQTTPIFEHPDTA----EGKRAPV---TCYKCGVEGHVASRC 161
            E F R ++ +  +    +PDT      GK  PV   TCYKCG   H    C
Sbjct: 1769 ERFFRVYKDECLSCTLGNPDTEIRAHTGKACPVRLSTCYKCGKADHNLREC 1819



 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 106  CYACGKLGHKSNEC 119
            CY CGK  H   EC
Sbjct: 1806 CYKCGKADHNLREC 1819


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 33  EEMVVSLILAHMGQIEPRLQ-RNIFAEEITTRCKMQRELMAFSYRKRSYQEMTKAVASNT 91
           +E+   L + ++G     +Q + IF +E+  + K    ++ F Y ++ Y  M K +  + 
Sbjct: 559 KELSNILKIVYLGIFSQNVQIQLIFLDELL-KSKKSENVLKFIYTRKLYALMQKELQHSN 617

Query: 92  HDNKLPKLSSGFTKCYACGKLGHKSN-ECFSRSHEKQQTTPIFEHPDTAEGK 142
             N+L  L        + G L ++S+  C      KQ T  ++ H    EG+
Sbjct: 618 PQNELDALQIIHD---SQGLLDYESSILCLQAVSWKQVTDLLYSHLSLKEGQ 666


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 127 QQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCSKTWSVASNSAQPTVAPSIVKR 183
           +QT+P  E   + +  R    C+ CGV       CS+TW     + +  + P+  K+
Sbjct: 172 EQTSPKEEDEKSDKVPRVDKVCFTCGV------NCSQTWYHNLKNKKYDICPNCYKQ 222


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 57  AEEITTRCKMQRELMAFSYRKRSYQEMTKAVASNTHDNKLPKLSS 101
           A+E+ T    QREL+    +K    E T  + S      LP++SS
Sbjct: 488 ADEVETDATSQRELLERQIQKAESSEDTSEIESLQGKLSLPQVSS 532


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 9   GECLAAYASRLFTLLMSRWSNLEKEEMVVSLILAHMGQIEPRLQRNIF 56
           GE +A   S + +LL   W   +KE ++ + +LA M Q    ++   F
Sbjct: 610 GEHVAPMESTIASLLSQLWDGWKKEPLLRARVLAVMHQFVNAIKAKSF 657


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/101 (17%), Positives = 41/101 (40%)

Query: 44  MGQIEPRLQRNIFAEEITTRCKMQRELMAFSYRKRSYQEMTKAVASNTHDNKLPKLSSGF 103
           M   E   +  +F  E      M+R  +A    +++ Q M ++   +T D  L   ++G 
Sbjct: 90  MAMTEIERESILFEREEEISKLMERRELAIRLHQQNAQYMAQSTRRSTRDKPLTSAAAGK 149

Query: 104 TKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRA 144
                  K   +     S S   ++ +P+ ++ +  E +++
Sbjct: 150 RDKLTELKKRRQERSARSVSERTRKRSPVSDYEEQNESEKS 190


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.130    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,032,242
Number of Sequences: 5004
Number of extensions: 39525
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 28
length of query: 238
length of database: 2,362,478
effective HSP length: 71
effective length of query: 167
effective length of database: 2,007,194
effective search space: 335201398
effective search space used: 335201398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)