Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001816-TA|BGIBMGA001816-PA|IPR001878|Zinc finger,
CCHC-type, IPR009007|Peptidase aspartic, catalytic
(238 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 45 4e-05
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 43 2e-04
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 35 0.045
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 33 0.14
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 33 0.18
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 33 0.18
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 33 0.18
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 33 0.24
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 33 0.24
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 31 0.97
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 31 0.97
Z81481-2|CAB03948.1| 593|Caenorhabditis elegans Hypothetical pr... 30 1.3
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 30 1.7
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 30 1.7
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 30 1.7
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 30 1.7
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 30 1.7
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 30 1.7
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 30 1.7
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 30 1.7
Z92777-4|CAB07170.1| 304|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 29 2.9
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 29 2.9
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 28 5.1
Z82076-5|CAB04935.2| 307|Caenorhabditis elegans Hypothetical pr... 28 6.8
AC025723-12|AAK29938.1| 215|Caenorhabditis elegans Hypothetical... 28 6.8
Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical pr... 27 9.0
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 27 9.0
U23529-4|AAK39164.2| 545|Caenorhabditis elegans Hypothetical pr... 27 9.0
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 97 PKLSSGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTA----EGKRAPVTCYKCG 152
P S T C+ C + GHK+ C + +Q D + + + VTCYKCG
Sbjct: 198 PTYSQAIT-CHNCHERGHKATTCPHLPGQTRQNQDHHHRVDLSLIPDKKNLSDVTCYKCG 256
Query: 153 VEGHVASRCSK-TWSVASNSA 172
+GH A+RC K + SN+A
Sbjct: 257 EKGHYANRCHKGALAFLSNTA 277
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 137 DTAEGKRAPVTCYKCGVEGHVASRCSKTWSVASNSAQPTVAPSIVKRVNV-CGMKPVTGI 195
D+ +G P CYKC V GHV+ C ++ S S S V + V G + +
Sbjct: 302 DSRKGNYRPPYCYKCKVVGHVSKDCPQS-STNSGVTNRKTEHSEVNTLEVGSGRQTSPSL 360
Query: 196 -ITQFGEQFSFCFDSGADCSLI 216
+ G+Q F FD+G+D +LI
Sbjct: 361 RLNVEGQQIDFTFDTGSDITLI 382
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 35.1 bits (77), Expect = 0.045
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 102 GFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKR-APVTCYKCGVEGHVASR 160
G CY CG GH S +C S E EG+ CY CG GH++
Sbjct: 65 GGGSCYNCGGRGHYSRDCPSARSEGGSGG---YGGRGGEGRSFGGQKCYNCGRSGHISRE 121
Query: 161 CSKTWS 166
C+++ S
Sbjct: 122 CTESGS 127
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 18/62 (29%)
Query: 100 SSGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVAS 159
S G KCY CG+ GH S EC +AE KR CY+C GH++
Sbjct: 103 SFGGQKCYNCGRSGHISREC--------------TESGSAEEKR----CYQCQETGHISR 144
Query: 160 RC 161
C
Sbjct: 145 DC 146
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCSK 163
CY C + GH S C P E G TCY C GH + C K
Sbjct: 6 CYKCQQPGHISRNC-----------PNGESDGGRRGGGGGSTCYNCQETGHFSRDCPK 52
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 136 PDTAEGKRAPVTCYKCGVEGHVASRCSKTWS-VASNSAQPTVAPSIVKR 183
P T + +R P C+ CG GH+++ C K V QP + + V+R
Sbjct: 598 PKTWKRERPPPQCFTCGEMGHISTYCPKRIDRVQQQQTQPNSSVNDVER 646
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 105 KCYACGKLGHKSNECFSRSH--EKQQTTP 131
+C+ CG++GH S C R ++QQT P
Sbjct: 609 QCFTCGEMGHISTYCPKRIDRVQQQQTQP 637
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 33.1 bits (72), Expect = 0.18
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 46 QIEPRLQRNIFAEEITTRCKMQRELMAFSYRKRSYQEMTKAVASNTHDNKLPKLSSGFTK 105
Q E + +R + EE Q L RK+ + A + + L K +S
Sbjct: 355 QWEVKAKRPLTLEEAYDEALSQELLQDQKMRKQIEDPVANAFFAR---HGLQK-NSFVGN 410
Query: 106 CYACGKLGHKSNECFSRSHEKQQ 128
CY CGK GH +NEC + ++ Q
Sbjct: 411 CYYCGKRGHTANECRRKKSDESQ 433
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 148 CYKCGVEGHVASRCSKTWSVASNSAQ 173
CY CG GH A+ C + S S + +
Sbjct: 411 CYYCGKRGHTANECRRKKSDESQNGE 436
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 106 CYACGKLGHKSNECFSRSHEK---QQTTPIFEHPDTAEGKRAPV-TCYKCGVEGHVASRC 161
C+ CG+ GH S EC + + + + R P C CG+EGH A C
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDC 631
Query: 162 SK 163
+
Sbjct: 632 DQ 633
Score = 31.5 bits (68), Expect = 0.55
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 140 EGKRAPVTCYKCGVEGHVASRCSK 163
+G P C+ CG EGH++ C K
Sbjct: 564 DGGERPRGCHNCGEEGHISKECDK 587
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 106 CYACGKLGHKSNECFSRSHEK---QQTTPIFEHPDTAEGKRAPV-TCYKCGVEGHVASRC 161
C+ CG+ GH S EC + + + + R P C CG+EGH A C
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDC 631
Query: 162 SK 163
+
Sbjct: 632 DQ 633
Score = 31.5 bits (68), Expect = 0.55
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 140 EGKRAPVTCYKCGVEGHVASRCSK 163
+G P C+ CG EGH++ C K
Sbjct: 564 DGGERPRGCHNCGEEGHISKECDK 587
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 32.7 bits (71), Expect = 0.24
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 16/101 (15%)
Query: 152 GVEGHVASRCSKTWSVASNSAQPTVAPSIVKRVN-----VCGMKPVTGIITQFGEQFSFC 206
G G V S V +A PT PS V + G K T + +Q G+ FS
Sbjct: 1606 GGAGGVTSSSGGVQQVIHENATPT--PSSTSMVGHAMSVIPGSKVATELFSQLGKVFSMS 1663
Query: 207 FDSGADCSLIKES---------VSRKLVGTLQHAIATLCNM 238
DSG S + S ++ +L H++AT+CN+
Sbjct: 1664 GDSGGVISKLDSSRQHGNGWRQAQSDMLSSLPHSLATICNV 1704
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 32.7 bits (71), Expect = 0.24
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 16/101 (15%)
Query: 152 GVEGHVASRCSKTWSVASNSAQPTVAPSIVKRVN-----VCGMKPVTGIITQFGEQFSFC 206
G G V S V +A PT PS V + G K T + +Q G+ FS
Sbjct: 1606 GGAGGVTSSSGGVQQVIHENATPT--PSSTSMVGHAMSVIPGSKVATELFSQLGKVFSMS 1663
Query: 207 FDSGADCSLIKES---------VSRKLVGTLQHAIATLCNM 238
DSG S + S ++ +L H++AT+CN+
Sbjct: 1664 GDSGGVISKLDSSRQHGNGWRQAQSDMLSSLPHSLATICNV 1704
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 30.7 bits (66), Expect = 0.97
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 122 RSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCSKTWSVASNSAQP 174
RS E T+PI E A+G TC+ C GH A+ CS +N P
Sbjct: 182 RSDEFCGTSPILE----AKGFGISNTCFNCKKYGHRATECSAPQRECANCGDP 230
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 30.7 bits (66), Expect = 0.97
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 122 RSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCSKTWSVASNSAQP 174
RS E T+PI E A+G TC+ C GH A+ CS +N P
Sbjct: 182 RSDEFCGTSPILE----AKGFGISNTCFNCKKYGHRATECSAPQRECANCGDP 230
>Z81481-2|CAB03948.1| 593|Caenorhabditis elegans Hypothetical
protein C38D9.2 protein.
Length = 593
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 93 DNKLPKLSSGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEG--KRAPVTCYK 150
+N + KL+ G+ Y LG +S + + Q P + E KR TC
Sbjct: 426 ENAVQKLT-GYCARYPQEALGMRSENVAPQWNHYPQPPPKEAPKEAIETTIKRTESTCTF 484
Query: 151 CGVEGHVASRCSK--TW 165
CG+ H + +C K TW
Sbjct: 485 CGLYNHTSEKCKKFFTW 501
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 106 CYACGKLGHKSNEC 119
C+ CG+ GH+SNEC
Sbjct: 264 CFNCGEQGHRSNEC 277
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 113 GHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCSK 163
G ++N CF+ +++ + P+ + +R P CY C GH + C++
Sbjct: 154 GERNNNCFNCQQPGHRSS---DCPEPRK-EREPRVCYNCQQPGHTSRECTE 200
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 106 CYACGKLGHKSNEC 119
C+ CG+ GH+SNEC
Sbjct: 475 CFNCGEQGHRSNEC 488
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 106 CYACGKLGHKSNEC 119
C+ CG+ GH+SNEC
Sbjct: 475 CFNCGEQGHRSNEC 488
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 106 CYACGKLGHKSNEC 119
C+ CG+ GH+SNEC
Sbjct: 264 CFNCGEQGHRSNEC 277
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 113 GHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCSK 163
G ++N CF+ +++ + P+ + +R P CY C GH + C++
Sbjct: 154 GERNNNCFNCQQPGHRSS---DCPEPRK-EREPRVCYNCQQPGHTSRECTE 200
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 21 TLLMSRWSNLEKEEMVVSLILAHMGQIEPRLQRNIFAEEITTRCKMQRELMAFSYRKRSY 80
T L+S +N +K V+ + + P L+ E IT+R KM++E+ F Y
Sbjct: 470 TRLLSA-ANQKKSLKRVARDINEYKSVIPCLKSTSTGERITSRVKMEQEIEKF------Y 522
Query: 81 QEMTKAVASNTHDNKLP 97
E+ K+ SN+ + +P
Sbjct: 523 TELFKSAVSNSQTSSIP 539
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 21 TLLMSRWSNLEKEEMVVSLILAHMGQIEPRLQRNIFAEEITTRCKMQRELMAFSYRKRSY 80
T L+S +N +K V+ + + P L+ E IT+R KM++E+ F Y
Sbjct: 209 TRLLSA-ANQKKSLKRVARDINEYKSVIPCLKSTSTGERITSRVKMEQEIEKF------Y 261
Query: 81 QEMTKAVASNTHDNKLP 97
E+ K+ SN+ + +P
Sbjct: 262 TELFKSAVSNSQTSSIP 278
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 106 CYACGKLGHKSNEC 119
C+ CG+ GH+SNEC
Sbjct: 264 CFNCGEQGHRSNEC 277
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 113 GHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCSK 163
G ++N CF+ +++ + P+ + +R P CY C GH + C++
Sbjct: 154 GERNNNCFNCQQPGHRSS---DCPEPRK-EREPRVCYNCQQPGHTSRECTE 200
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 106 CYACGKLGHKSNEC 119
C+ CG+ GH+SNEC
Sbjct: 475 CFNCGEQGHRSNEC 488
>Z92777-4|CAB07170.1| 304|Caenorhabditis elegans Hypothetical
protein C17H1.6 protein.
Length = 304
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 50 RLQRNIFAEEITTRCKMQRELMAFSYRKRSYQEMT 84
R Q+N + EE+ TR K+ +E++ +Y +++ E T
Sbjct: 21 RNQKNAYEEELMTREKIDQEMLKQAYENKNHIEET 55
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 14 AYASRLFTLLMSRWSNLEKEEMVVSLILAHMGQIEPRLQRNIFAEEITTRCKMQRELMAF 73
+Y T M R+ MV S+ +GQ+E L R + ++ ++ +
Sbjct: 795 SYVETESTRRMKRYQRDTSPAMVRSMYEGRIGQLERSLSREVIQKDRVCLWRLGNVVYGG 854
Query: 74 SYRKRSYQEMTKAV 87
YRK+ ++ KAV
Sbjct: 855 LYRKKYDADLEKAV 868
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 14 AYASRLFTLLMSRWSNLEKEEMVVSLILAHMGQIEPRLQRNIFAEEITTRCKMQRELMAF 73
+Y T M R+ MV S+ +GQ+E L R + ++ ++ +
Sbjct: 845 SYVETESTRRMKRYQRDTSPAMVRSMYEGRIGQLERSLSREVIQKDRVCLWRLGNVVYGG 904
Query: 74 SYRKRSYQEMTKAV 87
YRK+ ++ KAV
Sbjct: 905 LYRKKYDADLEKAV 918
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 21 TLLMSRWSNLEKEEMVVSLILAHMGQIEPRLQRNIFAEEITTRCKMQRELMAFSYRKRSY 80
T L+S +N +K V+ + + P L+ E IT+R KM++E+ F Y
Sbjct: 299 TRLLSA-ANQKKSLKRVARDINEYKSVIPCLKSTSTGERITSRVKMEQEIEKF------Y 351
Query: 81 QEMTKAVASNTHDNKLP 97
E K+ SN+ + +P
Sbjct: 352 TEFFKSAVSNSQASSIP 368
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 119 CFSRSH-EKQQTTPIFEHPDTAEGKRAPV-TCYKCGVEGHVASRCSK 163
C S SH + + PIF + K + C+ C GH S+CS+
Sbjct: 317 CSSTSHVHRHEECPIFNTAEARIQKAREIGLCFGCLRSGHQRSKCSR 363
>Z82076-5|CAB04935.2| 307|Caenorhabditis elegans Hypothetical
protein W07G1.3 protein.
Length = 307
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 34 EMVVSLILAHM--GQIEPRLQRNIFAEEITTRCKMQRELMAFSYRKRSYQEMTKA 86
E +V L++ + QIE + EEI R ++Q L A YRKR + A
Sbjct: 217 EEIVKLVVVALKDSQIEEGREEEESPEEILRRKRIQNNLAAARYRKRQREARESA 271
>AC025723-12|AAK29938.1| 215|Caenorhabditis elegans Hypothetical
protein Y54F10AM.1 protein.
Length = 215
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 120 FSRSH-EKQQTT-PIFEHPDTAEGKRAPVTCYKCGVEGHVASRC 161
FS +H EK + P P T+ G RAP+ +CG G V++RC
Sbjct: 114 FSSTHGEKAKIWGPTNIRPPTSYGFRAPLCLTRCG-RGAVSARC 156
>Z71181-6|CAA94899.1| 647|Caenorhabditis elegans Hypothetical
protein K07C5.6 protein.
Length = 647
Score = 27.5 bits (58), Expect = 9.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 106 CYACGKLGHKSNECFSR 122
C CG +GH+ +CF R
Sbjct: 115 CENCGAMGHQKRDCFDR 131
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 107 YACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCSKTWS 166
Y K H ++ +++ T+P+ E P GK+ + V+ +++ K +
Sbjct: 189 YEGKKKAHPASFANEEKAKRKNTSPVKERPPRGHGKQ-----LRMAVQQPLSTSSPKKKT 243
Query: 167 VASNSAQPTVAPSIVK 182
+ +NSA T APS +K
Sbjct: 244 INANSA--TAAPSFMK 257
>U23529-4|AAK39164.2| 545|Caenorhabditis elegans Hypothetical
protein C15B12.4 protein.
Length = 545
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 146 VTCYKCGVEGHVASRCSKTWSVASNSAQPTVAPSIVKRVNVCGMKPVTGII 196
+ CY C VE + SR + SV SN+ S++ + K G++
Sbjct: 8 ILCYICFVENSLVSRIKRQTSVDSNAETDGNGDSVLTDASTQHFKSPDGVL 58
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.130 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,806,891
Number of Sequences: 27539
Number of extensions: 227830
Number of successful extensions: 728
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 100
length of query: 238
length of database: 12,573,161
effective HSP length: 79
effective length of query: 159
effective length of database: 10,397,580
effective search space: 1653215220
effective search space used: 1653215220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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