Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001816-TA|BGIBMGA001816-PA|IPR001878|Zinc finger,
CCHC-type, IPR009007|Peptidase aspartic, catalytic
(238 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 48 4e-06
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 45 5e-05
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 37 0.010
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 37 0.014
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 37 0.014
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 36 0.018
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 35 0.056
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 34 0.097
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 33 0.13
At2g10050.1 68415.m01043 zinc knuckle (CCHC-type) family protein... 33 0.13
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 33 0.17
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.17
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 31 0.52
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.52
At2g07760.1 68415.m01004 zinc knuckle (CCHC-type) family protein... 31 0.52
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 31 0.69
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 31 0.69
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 31 0.69
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.69
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.69
At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /... 30 1.2
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 30 1.2
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 30 1.6
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 30 1.6
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 29 2.1
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.8
At5g59670.1 68418.m07481 leucine-rich repeat protein kinase, put... 29 3.7
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 29 3.7
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 3.7
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 28 4.8
At2g47890.2 68415.m05981 zinc finger (B-box type) family protein 28 4.8
At2g47890.1 68415.m05982 zinc finger (B-box type) family protein 28 4.8
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 28 6.4
At3g31950.1 68416.m04046 hypothetical protein 28 6.4
At1g70650.1 68414.m08145 zinc finger (Ran-binding) family protei... 28 6.4
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 28 6.4
At4g02715.1 68417.m00367 expressed protein 27 8.5
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 106 CYACGKLGHKSNEC---FSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCS 162
CY CG+LGH C + S+E TP + R CY+CG EGH A C
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATP-----ERLFNSREASECYRCGEEGHFARECP 341
Query: 163 KTWSVASN 170
+ S++++
Sbjct: 342 NSSSISTS 349
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 89 SNTHDNKLPKL---SSGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAP 145
SN +D+ P+ S ++CY CG+ GH + EC P T+ G+ +
Sbjct: 307 SNENDSATPERLFNSREASECYRCGEEGHFAREC-----------PNSSSISTSHGRESQ 355
Query: 146 VTCYKCGVEGHVASRCSKTWSVASNSAQPTVAPSIVKRVN 185
CY+C GH A C + V+ + + ++ N
Sbjct: 356 TLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKN 395
Score = 35.1 bits (77), Expect = 0.042
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 101 SGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASR 160
+G+ CY+CG+ GH S C + + ++ A+ CY C GH A
Sbjct: 163 AGWVSCYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRAKD 222
Query: 161 CSKTWSVASNSA 172
C + S A
Sbjct: 223 CPDKYKNGSKGA 234
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 106 CYACGKLGHKSNECFSRSHE----KQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRC 161
C+ CG L H + +C S+ H+ K+ + PD + C +CG GH C
Sbjct: 191 CFICGSLEHGAKQC-SKGHDCYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILC 249
Query: 162 SKTWS 166
+S
Sbjct: 250 KYEYS 254
Score = 28.3 bits (60), Expect = 4.8
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 106 CYACGKLGHKSNEC---FSRSHEKQQTTPI---FEHPDTAEGKRA---PVTCYKCGVEGH 156
C CG GH C +S+ K I F H E + V+CY+CG GH
Sbjct: 236 CLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVEPGNSLSWAVSCYRCGQLGH 295
Query: 157 VASRCSKTW--SVASNSAQP 174
C + + S ++SA P
Sbjct: 296 SGLACGRHYEESNENDSATP 315
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 44.8 bits (101), Expect = 5e-05
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 98 KLSSGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHV 157
K SS +CY CGK GH S +C +S +Q F+ A+ + CYKCG GH
Sbjct: 298 KSSSSSGECYKCGKQGHWSRDCTGQSSNQQ-----FQ-SGQAKSTSSTGDCYKCGKAGHW 351
Query: 158 ASRCS 162
+ C+
Sbjct: 352 SRDCT 356
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 98 KLSSGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHV 157
K +S C+ CGK GH S +C + Q P +E P + + CYKCG +GH
Sbjct: 262 KSTSAAGDCFKCGKPGHWSRDCTA-----QSGNPKYE-PGQMKSSSSSGECYKCGKQGHW 315
Query: 158 ASRCS 162
+ C+
Sbjct: 316 SRDCT 320
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 104 TKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCS 162
T CY CGK GH + +C +S T P+ + A C+KCG GH + C+
Sbjct: 237 TPCYKCGKEGHWARDCTVQS----DTGPV-------KSTSAAGDCFKCGKPGHWSRDCT 284
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/28 (57%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 148 CYKCGVEGHVASRC---SKTWSVASNSA 172
CYKCG EGH A C S T V S SA
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSA 266
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 98 KLSSGFTKCYACGKLGHKSNECFS 121
K +S CY CGK GH S +C S
Sbjct: 334 KSTSSTGDCYKCGKAGHWSRDCTS 357
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 105 KCYACGKLGHKSNECFSRSHEKQQTTPIFE-----HPDTAEGKR----APVTCYKCGVEG 155
KCY C LGH C H + T + H A G+ +C+ CG EG
Sbjct: 54 KCYVCNSLGHLC--CIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGREG 111
Query: 156 HVASRCSKTWSV 167
H +C ++SV
Sbjct: 112 HFEHQCHNSFSV 123
Score = 30.7 bits (66), Expect = 0.91
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 116 SNECFSR-SHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCSKTWSVASNS 171
S+ CF S E+ + T++G+ CY+C +GH+A C + V S S
Sbjct: 164 SSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQVVSIS 220
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 102 GFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAE--------GKRAPVTCYKCGV 153
G CY+CG +GH + +C ++ + A G CYKCG
Sbjct: 228 GSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGK 287
Query: 154 EGHVASRCS 162
EGH A CS
Sbjct: 288 EGHFARECS 296
Score = 35.9 bits (79), Expect = 0.024
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 100 SSGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVAS 159
S G CY CG GH + +C S + Q+ T G CY CG GHVA
Sbjct: 128 SRGGEGCYNCGDTGHFARDCTSAGNGDQRGA-------TKGGNDG---CYTCGDVGHVAR 177
Query: 160 RCSK 163
C++
Sbjct: 178 DCTQ 181
Score = 35.5 bits (78), Expect = 0.032
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 99 LSSGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVA 158
+ G CY CG +GH + +C T + G TCY CG GH+A
Sbjct: 193 VKGGNDGCYTCGDVGHFARDC----------TQKVAAGNVRSGGGGSGTCYSCGGVGHIA 242
Query: 159 SRCS 162
C+
Sbjct: 243 RDCA 246
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCSK 163
CY CG +GH + +C +S + K CY CG GH A C++
Sbjct: 166 CYTCGDVGHVARDCTQKS--------VGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQ 215
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 102 GFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGK-RAPVTCYKCGVEGHVASR 160
G + CY CG+LGH S +C I E + R CY CG GH A
Sbjct: 98 GGSGCYNCGELGHISKDC-----------GIGGGGGGGERRSRGGEGCYNCGDTGHFARD 146
Query: 161 CS 162
C+
Sbjct: 147 CT 148
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 106 CYACGKLGHKSNECFS 121
CY CGK GH + EC S
Sbjct: 282 CYKCGKEGHFARECSS 297
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 106 CYACGKLGHKSNECF---SRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRC 161
C++CGK GH++ +C SR+ + + F+ A C C GH+A C
Sbjct: 114 CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTNDKACKNCRTSGHIARDC 172
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 101 SGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASR 160
S + C CG GH + EC + S P A C+ CG GH A
Sbjct: 71 SNVSVCNNCGLPGHIAAECTAESRCWNCREP----GHVASNCSNEGICHSCGKSGHRARD 126
Query: 161 CSKTWSVASN 170
CS + S A +
Sbjct: 127 CSNSDSRAGD 136
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCSK 163
C C K GH + +C + K T A R C C + GHVA C K
Sbjct: 140 CNNCFKQGHLAADCTNDKACKNCRTS----GHIARDCRNDPVCNICSISGHVARHCPK 193
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIFEHPD-TAEGKRAPVTCYKCGVEGHVASRCS 162
C C + GH + +C + S P + TAE + C+ C GHVAS CS
Sbjct: 57 CNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESR-----CWNCREPGHVASNCS 109
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 36.3 bits (80), Expect = 0.018
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 58 EEITTRCKMQRELMAFSYRKRSYQEMTKAVASNTHDNKLPKLSSGFTKCYACGKLGHKSN 117
E R K+ +E A Y K + +E+ S + D K G C+ CG+ GH N
Sbjct: 116 ENQNLRKKLMKEKTAAGY-KETAEELHVRRRSVSRDRSKSKGEKG--ACWICGEDGHYKN 172
Query: 118 ECFSRSHEK 126
+C SR+ EK
Sbjct: 173 DCPSRNSEK 181
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 34.7 bits (76), Expect = 0.056
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 16/56 (28%)
Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRC 161
CY CGKLGH + C H Q T + +TCY C EGH ++ C
Sbjct: 36 CYKCGKLGHFARSC----HVVTQPTTAY------------ITCYFCSEEGHRSNGC 75
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 122 RSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRC 161
R +++++T + + D P CYKCG GH A C
Sbjct: 11 RDNDRERTRASYNN-DRRRNDYDPRACYKCGKLGHFARSC 49
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 33.9 bits (74), Expect = 0.097
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 88 ASNTHDNKLPKLSSGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVT 147
A + N + G + CY CG +GH + C S+ P G RA
Sbjct: 208 ARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSK-------IP----SGGGGGGRA--- 253
Query: 148 CYKCGVEGHVASRCSKTWSVAS 169
CY+CG GH+A C + S +S
Sbjct: 254 CYECGGTGHLARDCDRRGSGSS 275
Score = 31.9 bits (69), Expect = 0.39
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 100 SSGFTKCYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVAS 159
S G +CY CG +GH + +C +Q ++ G CY CG GH+A
Sbjct: 126 SGGEGECYMCGDVGHFARDC------RQS-----GGGNSGGGGGGGRPCYSCGEVGHLAK 174
Query: 160 RC 161
C
Sbjct: 175 DC 176
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRCSKT 164
C+ CG++GH + +C S K EG+ CY CG GH A C ++
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGG-GGRRSGGEGE-----CYMCGDVGHFARDCRQS 148
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 102 GFTKCYACGKLGHKSNECFS 121
G KC+ CGK GH + EC S
Sbjct: 280 GSNKCFICGKEGHFARECTS 299
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 102 GFTKCYACGKLGHKSNECF--SRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVAS 159
G C+ CG+ GH + EC + + G ++CY CG GH A
Sbjct: 134 GDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFAR 193
Query: 160 RCS 162
C+
Sbjct: 194 DCT 196
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 147 TCYKCGVEGHVASRCSK 163
+C+KCG GH+A CS+
Sbjct: 137 SCFKCGEPGHMARECSQ 153
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 102 GFTKCYACGKLGHKSNECFS 121
G CY+CG+ GH + +C S
Sbjct: 178 GGLSCYSCGESGHFARDCTS 197
>At2g10050.1 68415.m01043 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 120
Score = 33.5 bits (73), Expect = 0.13
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 77 KRSYQEMTKAVASNTHDNKLPKLS----SGFT-KCYACGKLGHKSNECFSRSHEKQQTTP 131
K +Q K + KL K S S FT CY GK GHKS EC S+ +
Sbjct: 21 KEKWQNKGKGKVGPQNTQKLKKKSGENTSKFTGTCYKFGKEGHKSFECRSKKDSNKNEAN 80
Query: 132 IFEHPDTAEGKRAPV 146
+ + A G A V
Sbjct: 81 LTQEDMCAVGTEANV 95
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 147 TCYKCGVEGHVASRCSKTWSVASNSAQPTVAP--SIVKRVNVCGMKPVT 193
TCYK G EGH + C N A T ++ NV P+T
Sbjct: 54 TCYKFGKEGHKSFECRSKKDSNKNEANLTQEDMCAVGTEANVAESHPMT 102
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVEGHVASRC 161
C+ CG +GH CF EK + ++ G + CY GV+GH+ C
Sbjct: 628 CHHCGVVGHIRPRCFRLLREKNRLMNAYD--VRFHGPK----CYHYGVQGHIKRNC 677
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 44 MGQIEPRLQRNIFAEEITTRCKMQRELMAFSYRKR-SYQEMTKAVASNTHD-NK--LPKL 99
+G++ P + + I E + E++ ++KR S+ E +A+ D NK L K
Sbjct: 316 LGEV-PEIVQKIIQEVRQSLKSRLMEILRLPFKKRFSWNERNRALHEFKVDGNKEVLYKS 374
Query: 100 SSGFTKCYACGKLGHKSNECFSRSHEKQQ 128
S G +C+ C H +EC + EK++
Sbjct: 375 SKG-KRCFECKGFRHMCSECANLMKEKEK 402
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 144 APVTCYKCGVEGHVASRCSKTWSVA-SNSAQPTVAPS 179
AP C+KCG GH + C + VA +NS + APS
Sbjct: 4 APTGCFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPS 40
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.5 bits (68), Expect = 0.52
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCY 149
CY CG+ GH S C + T +H T E VT Y
Sbjct: 481 CYECGEKGHLSTACPIKLQNTSHTNSTLDH-QTVEAGPTQVTSY 523
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 141 GKRAPVTCYKCGVEGHVASRC 161
GK CY+CG +GH++S C
Sbjct: 569 GKIKKRNCYECGEKGHLSSAC 589
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 141 GKRAPVTCYKCGVEGHVASRC 161
GK CY+CG +GH+++ C
Sbjct: 474 GKVKRRNCYECGEKGHLSTAC 494
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.52
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 138 TAEGKRAPVTCYKCGVEGHVASRC 161
T + K +TCY+C EGH+A C
Sbjct: 217 TFQTKHVELTCYRCKQEGHIAKIC 240
>At2g07760.1 68415.m01004 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 530
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 145 PVTCYKCGVEGHVASRCSKTW----SVASNSAQPTVAPSIVKRVNVCGM-KPVT 193
P C KCG GH ASRC K V ++ + P+IV + + P+T
Sbjct: 320 PAKCGKCGQLGHKASRCMKPHLAHEKVTEIVSEEIITPAIVSLASATNLVSPIT 373
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 105 KCYACGKLGHKSNECFS--RSHEK 126
KC CG+LGHK++ C +HEK
Sbjct: 322 KCGKCGQLGHKASRCMKPHLAHEK 345
>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 457
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 143 RAPVTCYKCGVEGHVASRCSK 163
R P C CG GH+ SRCSK
Sbjct: 310 RPPPKCLNCGRYGHLLSRCSK 330
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 141 GKRAPVTCYKCGVEGHVASRCSK 163
G R CYKCG GH+A CS+
Sbjct: 124 GGRGGSDCYKCGEPGHMARDCSE 146
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 31.1 bits (67), Expect = 0.69
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 105 KCYACGKLGHKSNECFS--------RSHEKQQTTPIFEHPDTAEGKRA 144
KCY CG+ GH + EC S RS + ++ P + T G+R+
Sbjct: 97 KCYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSPTYGGRRS 144
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.1 bits (67), Expect = 0.69
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 104 TKCYACGKLGHKSNEC 119
+KCY CG+LGH + EC
Sbjct: 89 SKCYECGELGHFAREC 104
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.1 bits (67), Expect = 0.69
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 104 TKCYACGKLGHKSNEC 119
+KCY CG+LGH + EC
Sbjct: 89 SKCYECGELGHFAREC 104
>At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /
protein kinase, putative nearly identical to IRE
(incomplete root hair elongation) [Arabidopsis thaliana]
gi|6729346|dbj|BAA89783
Length = 1168
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 181 VKRVNVCGMKPVTGIITQFGEQFSFCFDSGADCSLIKESVSRKLVGTLQHAIATLCNM 238
V VNVCG + +I Q E D AD +L+ E+ R++ LQ LC +
Sbjct: 653 VANVNVCGYSSLDFMIEQLDELKYVIQDRKAD-ALVVETFGRRIEKLLQEKYIELCGL 709
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIFEH-PDTAEGKRAPVTCYKCGVEGHVASRCSKT 164
C C GH + SH K+QT + P +AE C + S C +
Sbjct: 68 CQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAEESACEQG 127
Query: 165 WSVASNSAQPTVAPSIVKRVNV 186
+ + T S V+++NV
Sbjct: 128 MGLMTIDEDGTGEKSGVQKINV 149
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 105 KCYACGKLGHKSNECFSR 122
KCY CG+ GH + EC +R
Sbjct: 100 KCYECGETGHFARECRNR 117
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 93 DNKLPKLSSGFTKCYACGKLGHKSNECFSRS 123
D P G C+ CGK GH + EC S S
Sbjct: 107 DRSRPSGGRGGGDCFKCGKPGHFARECPSES 137
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 100 SSGFTKCYACGKLGHKSNECFSRSHEK 126
+SG C CG LGH+ +C H+K
Sbjct: 544 ASGVKGCAYCGGLGHRIRDCPKLEHQK 570
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCG 152
C C + GH S C SR + + P +P E + V+C CG
Sbjct: 767 CIHCQQRGHASTNCPSRVPASRNSRPTATNPRNDE---STVSCNTCG 810
>At5g59670.1 68418.m07481 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 868
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 34 EMVVSLILAHMGQIEPRLQRNIFAEEITTRCKMQRELMAFSYRKRSYQEMTKAVASNTHD 93
E + L H+G P + R++ I + +L F RS+Q ++ S T
Sbjct: 669 EAALGLEYLHIGCTPPMVHRDVKTANILLDENFKAKLADFGL-SRSFQGEGESQESTTIA 727
Query: 94 NKLPKLSSGFTKCYACGKLGHKSN 117
L L +CY G+LG KS+
Sbjct: 728 GTLGYLDP---ECYHSGRLGEKSD 748
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 90 NTHDNKLPKLSSGFTKCYACGKLGHKSNEC 119
++ ++ P S C+ CGK GH++ +C
Sbjct: 712 SSSSSRAPSRESFGGSCFICGKSGHRATDC 741
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 148 CYKCGVEGHVASRCSK 163
CY+CG EGH++ C K
Sbjct: 154 CYECGDEGHLSYECPK 169
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 14/87 (16%)
Query: 89 SNTHDNKLPKLSSGFTK---CYACGKLGHKSNECFSRSHEKQQTTPIFEHPDTA------ 139
S TH KL S + + C C + GH C +++E + + DT
Sbjct: 81 SKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
Query: 140 -----EGKRAPVTCYKCGVEGHVASRC 161
+G +C+ C +GH++ C
Sbjct: 141 PYPMEDGGTKFASCFICKGQGHISKNC 167
>At2g47890.2 68415.m05981 zinc finger (B-box type) family protein
Length = 237
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIFEHPDT--AEGKRAPVTCYKCGVEGHVAS 159
C AC K H +N+ F++ E P + E +R+ V C C + H AS
Sbjct: 33 CLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETERS-VLCQNCDWQHHTAS 87
>At2g47890.1 68415.m05982 zinc finger (B-box type) family protein
Length = 332
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 106 CYACGKLGHKSNECFSRSHEKQQTTPIFEHPDT--AEGKRAPVTCYKCGVEGHVAS 159
C AC K H +N+ F++ E P + E +R+ V C C + H AS
Sbjct: 33 CLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETERS-VLCQNCDWQHHTAS 87
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 100 SSGFTKCYACGKLGHKSNECFSRSHEK 126
+SG C CG LGH+ +C H+K
Sbjct: 495 ASGVKGCAYCGGLGHRILQCPKFEHQK 521
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 103 FTKCYACGKLGHKSNEC 119
+TKCY C LGH S C
Sbjct: 313 YTKCYCCRGLGHVSMYC 329
>At1g70650.1 68414.m08145 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 466
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 96 LPKLSSGFTKCYACGKLGHKSNE-CFSRSHEKQQTTPIFEHPDTAEGKRAPVTCYKCGVE 154
L +++ G +C +C + + N C H++Q+ + T +++ VT VE
Sbjct: 308 LRQINPGEWECESCNYINFRRNSICLKCDHKRQKAANVTPDSKTVADRQSGVTKTWSFVE 367
Query: 155 GHVASRCS 162
RC+
Sbjct: 368 EESVKRCN 375
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 105 KCYACGKLGHKSNECFSRSHEKQQTTPIFEH 135
KC+ CG+ GH +++C +S I H
Sbjct: 264 KCFVCGQTGHFASDCPGKSGSNNAAADIPIH 294
>At4g02715.1 68417.m00367 expressed protein
Length = 205
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 131 PIFEHPDTAEGKRAPVTCYKCGVEGHVASRCS 162
P+F HP G+ +P+ C G RCS
Sbjct: 78 PVFHHPSVDSGRTSPIPIANC--RGSQIRRCS 107
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.130 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,509,680
Number of Sequences: 28952
Number of extensions: 213254
Number of successful extensions: 691
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 108
length of query: 238
length of database: 12,070,560
effective HSP length: 79
effective length of query: 159
effective length of database: 9,783,352
effective search space: 1555552968
effective search space used: 1555552968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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