Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001815-TA|BGIBMGA001815-PA|undefined
(208 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 28 0.86
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 28 1.1
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 27 1.5
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 27 2.0
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 27 2.6
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 2.6
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 3.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 3.5
SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2... 26 4.6
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 6.1
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 25 6.1
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 6.1
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 6.1
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 8.1
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 25 8.1
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 28.3 bits (60), Expect = 0.86
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 83 SNLTAVKTDANVTKSSGRKSMNAPGAPNILKEKLLSYLD----DAFGDIKNKMAVLNVVK 138
S LT+V ++ N+ + + + NA A + E+ L L ++ + ++ +N+
Sbjct: 510 SRLTSVLSECNMLRETASEEKNAFDAESDKLERELQQLKLSSHNSMLQLDQRIQSINIEA 569
Query: 139 -------MSYKNNGYFKIGYITASLDTLKVYLDNMKQD--MNANKEFWDDKR 181
M YKNN Y ++ ++ + K+++ + +D M+ KE D R
Sbjct: 570 DQIAHACMEYKNNIYKEVAFVLGEIIHFKLHVQDSLEDLKMDYQKELDDLSR 621
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 27 QRDFQYVVMTIKKLNANVLDINNRITSLNRFIDEKLSNVIVRRSAHGRLKRDLD 80
+ +F ++ I+ NVL+ +RI RF D+++ +I S G R+LD
Sbjct: 129 ENNFDIILQYIESQYDNVLEEESRIKRNARFCDDRVHALIYFISPTGHGLRELD 182
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 57 FIDEKLSNVIVRRSAHGRLKRDLDSASNLTAVKTDANVTKSSGRKSMNAP 106
FID + ++IV + A D+D ++LTA DAN SS KS P
Sbjct: 211 FIDSEAMSLIVEKFAQRNTLSDMDQPASLTAY-VDAN--SSSFTKSKPEP 257
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 46 DINNRITSLNRFIDEKLSNVIVRRSAHGRLKRDLDSASNLTAVKTDANVTKSSGRKSMNA 105
D+ + +FI K+ VI + + LK+ L + + + KT +VT R ++
Sbjct: 937 DLERAQREMIKFIVNKMEPVINQNLSTATLKKLLSANTWMDLDKTMTSVTSLLNRTGFSS 996
Query: 106 PGAPNILKE 114
+ N+ KE
Sbjct: 997 KSSENVKKE 1005
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 159 LKVYLDNMKQDMNANKEFWDDKRVLNLFDKLKAADNAVNGLLETLKLKM 207
LK L++ Q + +N E + +++LF++ + +A++G+ ET+ + M
Sbjct: 853 LKQTLNDASQGVRSNYEIFSHL-IVDLFEEKQTLYDALDGVFETVNIDM 900
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 64 NVIVRRSAHGRLKRDLDS---ASNLTAVKTDANVTKSSG 99
N + S+HGRL R D ++ L +KT N+TK +G
Sbjct: 378 NPHILASSHGRLVRIWDDRYGSAPLHTIKTSENITKING 416
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 70 SAHGRLKRDLDSASNLTAVKTDANVTKSSGRKSMNA 105
+A G + LD+AS +T+ T N T + S N+
Sbjct: 756 AAQGGVSAGLDTASQITSKNTTTNTTTVTTENSQNS 791
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 3.5
Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 10/190 (5%)
Query: 21 ETVEKQQRDFQYVVMTIKKLNANVLDINNRITSLNRFIDEKLSNVIVRRSAHGRLKRDLD 80
+T+ + + ++KL + ++ R DE + + + K D
Sbjct: 585 KTIRENEESISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDST 644
Query: 81 S-ASNLTAVKTDANVTKSSGRKSMNAPGAPNILKEKLLSYLDDAFGDIKNKMAVLNVVKM 139
S SNL S RK LKE L +D + ++ LN
Sbjct: 645 SKTSNLLEQLKMTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESLNDQLS 704
Query: 140 SYKNNGYFKIGYITASLDTLKVYLDNMKQDMN-----ANKEFWDDKRVLNLFDKLKAADN 194
K ++ +T S ++L YL N+K+ N NK+ + + +L+ LK+
Sbjct: 705 QLKT----EMESVTTSKESLADYLSNLKERHNDELDSLNKKLREFEGILSSNSSLKSEIE 760
Query: 195 AVNGLLETLK 204
N TL+
Sbjct: 761 ERNNQYVTLR 770
>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 121 DDAFGDIKNKMAVLNVVKMSYKNNG-YFKIGYITASLDTLKVYLDNMKQDMNANKEFWDD 179
D + D+K +N+ + NN +FKI T +K+Y + MN+ + D
Sbjct: 23 DTSQQDVKPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDG 82
Query: 180 KRV 182
+R+
Sbjct: 83 ERI 85
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 6.1
Identities = 25/130 (19%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
Query: 19 DRE-TVEKQQRDFQYVVMTIKKLNANVLDINNRITSLNRFIDEKLSNVIVRRSAHGRLKR 77
D+E T+EK + + T L + + N + S+N + E +++ + LK+
Sbjct: 526 DQELTIEKLHDSLETLSQTNNSLQCEISEKNAELNSVNSKLSEGRAHLETANKENEILKQ 585
Query: 78 DLD-SASNLTAV--KTDANVTKSSGRKSMNAPGAPNILKEKLLSYLDDAFGD-IKNKMAV 133
L+ S S L ++ + + K S P+ K + + + ++ +++
Sbjct: 586 QLELSESKLASLLNSYQSFINKKEHLYSFLQLVEPSFAKSDSSNATESQISESVRKGISI 645
Query: 134 LNVVKMSYKN 143
N++ + YKN
Sbjct: 646 FNLLFIVYKN 655
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 6.1
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 111 ILKEKLLSYLDDAFGDIKNKMAVLNVVKMSYKNNGYFKIGYITASLDTLKVYLDNMKQDM 170
ILK+ S + +G I+N++A+L + K ++ N T LD L +L + K
Sbjct: 20 ILKDDTKSKIITLYGKIRNEVALLLLEKTAFDLN--------TIKLDQLATFLQDTKLVE 71
Query: 171 NANKEFW 177
N + W
Sbjct: 72 NNDVFHW 78
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 81 SASNLTAVKTDANVTKSSGRKSMNAPGAPNILKEKLLSYLDDAFG 125
S ++ TA K A +K + P P E+L +DD FG
Sbjct: 150 SNASATASKNGAKSSKRKTTRRRRTPNRPKKSAEELDKEMDDYFG 194
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 44 VLDINNRITSLNRFIDEKLSNVIVRRSAHGRLKRDLDSASNLTAVKTDANVTKSSGRKSM 103
V D+N R+ L + +LS +++RR A L +A + +T K++ S+
Sbjct: 525 VADLNYRLDYLRKSFQPELSTLLLRRDALSTTVSKLQNAYSTVMEETAYLNVKNTELVSL 584
Query: 104 N 104
N
Sbjct: 585 N 585
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 55 NRFIDEKLSNVIVRRSAHGRLKRDLDSASNLTAVKTDANVTKSS 98
N F+D +S ++ + G L AS LTA + N T SS
Sbjct: 445 NSFLDANISKALLTSNQFGCTHEILSIASILTAGEVFYNPTSSS 488
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.0 bits (52), Expect = 8.1
Identities = 18/90 (20%), Positives = 38/90 (42%)
Query: 33 VVMTIKKLNANVLDINNRITSLNRFIDEKLSNVIVRRSAHGRLKRDLDSASNLTAVKTDA 92
+++T+KK N+N + + + ++ +K + + + + R LD+ +
Sbjct: 43 IILTVKKGNSNADRVLRFLVTFVNYLQQKDPEIDIVQPILKHILRGLDAKDKTVRYRCCQ 102
Query: 93 NVTKSSGRKSMNAPGAPNILKEKLLSYLDD 122
+ + N LKEKLLS + D
Sbjct: 103 IIARVVNCVKEIDDDLYNTLKEKLLSRVLD 132
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 909,156
Number of Sequences: 5004
Number of extensions: 38014
Number of successful extensions: 155
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 17
length of query: 208
length of database: 2,362,478
effective HSP length: 70
effective length of query: 138
effective length of database: 2,012,198
effective search space: 277683324
effective search space used: 277683324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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