GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001815-TA|BGIBMGA001815-PA|undefined
         (208 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143...    29   2.1  
12_01_0567 + 4641223-4641326,4641700-4642440,4642534-4642735,464...    29   2.7  
03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310...    29   3.6  
02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816           28   6.3  
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384...    27   8.3  
03_06_0438 - 33917678-33918084,33929568-33930402,33931055-339313...    27   8.3  

>02_04_0056 +
           19313422-19313967,19314035-19314168,19314263-19314398,
           19314870-19314923,19314995-19315135,19315220-19315546,
           19315647-19315916,19316080-19316226,19316890-19317045,
           19317223-19317290,19318210-19318309,19318696-19318985,
           19319074-19319274,19319840-19319902,19320263-19320356,
           19320964-19321035,19321979-19322077,19322254-19322376
          Length = 1006

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 103 MNAPGAPNILKEKLLSYLDDAFGDIKNKMAVLNVVKMSYKNNGYFKIGYITASLDTLKVY 162
           +   GA +I+  +  ++LD     I    A  N V     N+GY++   I+   +     
Sbjct: 831 LRTSGAKSIIFSQWTAFLD--LLQIPLSRATENFV---VPNHGYYENSCISTRHNFSFAR 885

Query: 163 LD---NMKQDMNANKEFWDDKRVLNLFDKLKAADNAVN 197
           LD   N++Q     KEF +DK +L L   LKA    +N
Sbjct: 886 LDGTLNLQQREKVIKEFSEDKSILVLLMSLKAGGVGIN 923


>12_01_0567 +
           4641223-4641326,4641700-4642440,4642534-4642735,
           4642830-4643285,4643382-4643774,4643868-4643870,
           4645366-4645417,4645929-4646023
          Length = 681

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 10  LSFKGPDSADRETVEKQQRDFQYVVMTIKKLNANVLDINNRITSLNRFID 59
           L FK  D +D    E     F   +   K++  ++ DIN +I S+ + +D
Sbjct: 576 LQFKAEDKSDNNKPEPNHTKFATYMENAKRIALSLPDINQQIISIPQGVD 625


>03_02_0834 -
           11630288-11630500,11630531-11630623,11630844-11631050,
           11631301-11633089,11633817-11634145
          Length = 876

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 12  FKGPDSADRETVEKQQRDFQYVVMTIKKLNANVLDINNRITSL---NRFIDEKLSNVIVR 68
           F+  +   RE V +           +  L +N +D++N+ITSL   N+ ++++L    V+
Sbjct: 409 FQSEEQRLRERVRELAEQNVSFQREVTLLESNRIDVSNKITSLELQNKQLNDELQK--VK 466

Query: 69  RSAHGRLKRDLDSASNLTAVKTDAN 93
           +     LK  ++   NLT    + N
Sbjct: 467 KEHDTLLKSSVELNDNLTKTAEERN 491


>02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816
          Length = 343

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 83  SNLTAVKTDANVTKSSGR-KSMNAPGAPNILKEKLLSYLDDAFGDIKNKMAVLNVVKMSY 141
           ++L+A+  + N     G  K +N   + N    + L    D    I N  AV   +++SY
Sbjct: 60  NHLSAMNQERNTNNDVGHEKQLNLQMSLNYFPVENL----DRLARIGNPSAVSTGLRLSY 115

Query: 142 KNNGYFKIGYITASLDTLKV---YLDNMKQDMN-ANKEF 176
           +NN +  I   + ++ +L +   ++D +  +++  NKEF
Sbjct: 116 ENNEHTSITSGSGNMSSLPIMASFVDEVMAELDKENKEF 154


>03_06_0670 +
           35434203-35434355,35436601-35436729,35436978-35438409,
           35438524-35439014
          Length = 734

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 47  INNRITSLNRFIDEKLSNVIVRRSAHGRLKRDLDSASNLTAVKTDANVTKSSGRKSMNAP 106
           + N  T+ N+     + N   +    G+    ++   N TA++   N+T SS R S    
Sbjct: 222 LENERTAANKMHSHSI-NASRKTEVLGQKSISINQQKNGTAIRRGDNITSSSQRTSDVFI 280

Query: 107 GAPNILKEKL 116
            AP   KE++
Sbjct: 281 AAPTAEKERV 290


>03_06_0438 -
           33917678-33918084,33929568-33930402,33931055-33931335,
           33931358-33931451,33931549-33931857
          Length = 641

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 116 LLSYLDDAFGDIKNKMAVLNVVKMSYKNNGYFKIGYITASLDTLKVYLDNMKQDMNANKE 175
           L + ++ +FG +K+K  +L  +   Y      KI  I A        +DN + DM+ +  
Sbjct: 541 LRNVVERSFGVLKSKWQILKGIPF-YPMEKQSKI--IVACFALHNFAMDNKEPDMDVHDV 597

Query: 176 FWDDKRVLNLFDKLKAADN 194
           F +DK +  L  ++ +  N
Sbjct: 598 FGEDKYLCRLGQQIGSTHN 616


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,051,573
Number of Sequences: 37544
Number of extensions: 184408
Number of successful extensions: 546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 8
length of query: 208
length of database: 14,793,348
effective HSP length: 79
effective length of query: 129
effective length of database: 11,827,372
effective search space: 1525730988
effective search space used: 1525730988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)