Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001814-TA|BGIBMGA001814-PA|IPR001810|Cyclin-like F-box
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.032
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 35 0.043
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 30 0.92
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 29 1.6
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 29 1.6
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 29 2.1
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 29 2.8
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 28 3.7
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 28 4.9
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 27 6.5
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 6.5
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 27 6.5
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb... 27 8.6
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.1 bits (77), Expect = 0.032
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 485 ASTSKDDPQPST-SNKTDQKNGEKT-ENKEPKQNILYVN 521
+ST+K P+T S+K + KN KT ENKEP Q YVN
Sbjct: 509 SSTNKISENPTTLSSKVENKNEPKTGENKEPSQTNEYVN 547
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 34.7 bits (76), Expect = 0.043
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 19 LDLSDDVLLCILKYCTPRDLKALGYTCPRLGALVVDRTLWESVDAR 64
L+LS D+LL I Y +D+ L TC L + D+T+W AR
Sbjct: 7 LELSYDILLEISTYLDYKDIVHLSETCKSLSYVFDDKTIWHRFCAR 52
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 30.3 bits (65), Expect = 0.92
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 191 FTLTQNLLTSLEQQCPNLTTLALDYCNI--DCSMRAI---CHFPRRLKVLSLRGSKCYNQ 245
F+L N+L + CPNL L + C + D M I C + RL + + R +
Sbjct: 131 FSLPANILEYISDNCPNLKALNIGNCGLVEDTGMVQIIKRCPYLNRLIIPNCR------K 184
Query: 246 PLDKSFLFKIQDYLKELEELDVSECE 271
D S +I ++L ELD+S CE
Sbjct: 185 LTDVS--LQILSEKEDLIELDISGCE 208
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 193 LTQNLLTSLEQQCPNLTTLALDYC 216
+T + L + Q CPNL TL L YC
Sbjct: 254 ITADSLFQIAQYCPNLQTLHLTYC 277
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 470 DVKMDEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQNI 517
+VK + P+PE +G + + P + Q+ GE+ E +E ++ I
Sbjct: 100 EVKTEPPQPEE-KEGKEAKEPEEPPKEEAEEPQEGGEEEEEEEEEEEI 146
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 468 QNDVKMDEPRPEAVNQGASTSKD-DPQPSTSNKTDQKNGEKTENKEPK 514
+ D+ M++P + TS+ QPS SN T++KN + + E K
Sbjct: 53 KEDINMEDPNVKTDETKVETSESTSEQPSNSNVTEEKNMGSSFHSECK 100
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 467 EQNDVKMDEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQNI 517
E + DEP AV +GAS D + S KT+ KN + N E K ++
Sbjct: 375 EAEKTETDEP---AVGKGASDVSDTAE--ISEKTEAKNADSEANLEEKSDV 420
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 469 NDVKMDEPRPEAVNQGASTSKDDPQPSTSNKTD-QKNGE-KTENKEPKQNIL 518
N +K EP E + TSK D P T K D NGE T E K ++L
Sbjct: 482 NGIK-SEPENEKKLKTEETSKTDDSPVTDAKPDVTSNGEPSTATSESKDSVL 532
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 496 TSNKTDQKNGEKTENKEPKQNILYV-NVGRRLHAMYRLAIPVYKVGESGD-SQPAAPSRR 553
+SN++D N E E K PK N++ V ++ + A + + GD +Q P
Sbjct: 1006 SSNQSDSLNKEDAEEKSPKPNVVNVTSITKTAGASVEIQNNIESASSGGDKTQLNGPGAD 1065
Query: 554 LDVSSAYQMTRFDP 567
V++ + P
Sbjct: 1066 QPVTATITFDKTSP 1079
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 474 DEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENK 511
+E ++++G S SK P P TDQK E E+K
Sbjct: 461 NETEIASLDEG-SESKPTPSPPAEQLTDQKQNEDNEDK 497
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 474 DEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQNI 517
DEP E N ++T+ + + NK ++KN TE+ I
Sbjct: 438 DEPTAETSNPVSATTVEAVTTTADNKDEEKNDHVTEDVSQNSTI 481
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 314 KTLKVIDLRESPVGDSEVSSFGWVGSLEELYVS 346
K LK I+LR+ PVG +E+ GW+ + + ++
Sbjct: 92 KNLKKINLRQLPVG-TELQKIGWLREVNTIILT 123
>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 227 HFPRRLKVLSLRGSKCYNQPLDKSFLFKIQDYLKELEELDVSECEW 272
H+ +R+ + GSK Y + L++ + + K L+ L+ EW
Sbjct: 28 HYDKRMFNADIDGSKAYAKALEQRGIISADELDKMLDGLEAVRDEW 73
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,567
Number of Sequences: 5004
Number of extensions: 132645
Number of successful extensions: 357
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 17
length of query: 684
length of database: 2,362,478
effective HSP length: 78
effective length of query: 606
effective length of database: 1,972,166
effective search space: 1195132596
effective search space used: 1195132596
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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