Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001814-TA|BGIBMGA001814-PA|IPR001810|Cyclin-like F-box
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11) 42 0.002
SB_55413| Best HMM Match : LRR_1 (HMM E-Value=0.00077) 40 0.009
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) 35 0.25
SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24) 34 0.33
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06) 34 0.43
SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10) 34 0.43
SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09) 33 0.57
SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.76
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 33 1.0
SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08) 32 1.3
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31) 32 1.3
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 32 1.3
SB_15911| Best HMM Match : Sec7 (HMM E-Value=0) 32 1.8
SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11) 31 2.3
SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.3
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.1
SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27) 31 3.1
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032) 31 3.1
SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36) 31 3.1
SB_35674| Best HMM Match : SH2 (HMM E-Value=0) 31 3.1
SB_50167| Best HMM Match : PRP1_N (HMM E-Value=0.87) 31 4.0
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 31 4.0
SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29) 30 5.4
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024) 30 5.4
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 7.1
SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032) 30 7.1
SB_2974| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 7.1
SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 7.1
SB_17611| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.4
>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
Length = 335
Score = 41.9 bits (94), Expect = 0.002
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 15 SAELLDLSDDVLLCILKYCTPRDLKALGYTCPRLGALVVDRTLWESVDARESPSGPKRLR 74
+A + D+V+L I +Y + L A C R L DR+LW++VD R P + L
Sbjct: 23 TALICSFPDNVMLNIFRYLDIKALCAASKVCRRWYHLGKDRSLWKAVDLRPWPLALRILW 82
Query: 75 WLLTHGLSSTTSELMLCGY 93
++ + L T +EL + G+
Sbjct: 83 KVVRNRLCETVTELQIKGF 101
Score = 38.3 bits (85), Expect = 0.020
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 608 SNLRILSLTGFRNITNRSLVHLATAAPRLRFIDFSG-TRVTQRGVDTFRSLRPDCEI 663
+ L+ LSL R +T+ +V +A +L+ +D + T V +G+DT R+ P+CEI
Sbjct: 276 AELQGLSLAKCRELTSTGIVTIAENCKQLKHLDITDCTLVNTQGLDTIRTTLPNCEI 332
Score = 30.7 bits (66), Expect = 4.0
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 196 NLLTSLEQQCPNLTTLALDYCNIDCSMRAICHFPRRLKVLSLRGSKCYNQPLDKSFLFKI 255
+LL ++ +CPNL L L YC++ ++ A C P LK L L S PL+ +
Sbjct: 114 SLLEEIKTKCPNLEKLTLCYCDMR-NVDARC-LPGTLKSLDLDHSIV---PLNWFDSLDV 168
Query: 256 QDYLKELEELDVSEC 270
+ L EL+++ C
Sbjct: 169 DLFFANLLELNLTYC 183
>SB_55413| Best HMM Match : LRR_1 (HMM E-Value=0.00077)
Length = 359
Score = 39.5 bits (88), Expect = 0.009
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 608 SNLRILSLTGFRNITNRSLVHLATAAPRLRFIDFSGTRVTQRGV 651
S+L+ LSL+ +T +S V +A +LR ID S T+V QRG+
Sbjct: 74 SSLKTLSLSNCEKVTYKSAVMIAGCCQQLRSIDLSSTKVDQRGI 117
>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 2996
Score = 34.7 bits (76), Expect = 0.25
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 461 PENGGGEQNDVKMDE--PRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQNIL 518
P G DVK PR E V +G +++ + +T KTD K+ E+ E +EP+ +L
Sbjct: 2592 PAQNPGYGPDVKQSRIMPRNELVKEGGTSTMESFNQNT--KTDNKDCEEDEKREPQPTML 2649
Query: 519 YVNVG-RRLHAMYRLAIP 535
G LH + L P
Sbjct: 2650 QDFAGYTTLHGFHFLIHP 2667
>SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)
Length = 515
Score = 34.3 bits (75), Expect = 0.33
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 20 DLSDDVLLCILKYCTPRDLKALGYTCPRLGALVVDRTLWESV 61
DL D +LL I + TP+++ G C + +D LW+S+
Sbjct: 27 DLPDSLLLFIFGFLTPKEVLTAGEVCRKWHRASMDEVLWKSI 68
>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
Length = 1020
Score = 33.9 bits (74), Expect = 0.43
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 18 LLDLSDDVLLCILKYCTPRDLKALGYTCPRLGALVVDRTLWESVDARE--SPSGPKRLRW 75
++ ++DDV++ + ++ R+L + C R L D +LW +D + + P +
Sbjct: 561 MITIADDVIIAVFRFLDMRNLLSASLVCRRWYRLTQDSSLWTDLDLAQYSTKLQPAAIHR 620
Query: 76 LLTHGLSSTTSELML--CGYAREAAGCL 101
LL+ + L L C E C+
Sbjct: 621 LLSQSFAPLGRRLSLATCAVNSETLVCV 648
>SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)
Length = 447
Score = 33.9 bits (74), Expect = 0.43
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 21 LSDDVLLCILKYCTPRDLKALGYTCPRLGALVVDRTLWESVDARE 65
L D VLL I Y + RDL + C + + D +LW +VD E
Sbjct: 5 LPDAVLLEIFLYLSRRDLGVVARVCKQWRRIAYDPSLWRTVDLNE 49
>SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)
Length = 456
Score = 33.5 bits (73), Expect = 0.57
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 20 DLSDDVLLCILKYCTPRDLKALGYTCPRLGALVVDRTLWESVDAR 64
+L + V+L I Y + DL C R L DR+LW +VD +
Sbjct: 48 ELDNPVILKIFSYLSRADLLKAAEVCKRWHELSFDRSLWRNVDLK 92
>SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 33.1 bits (72), Expect = 0.76
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 610 LRILSLTGFRNITNRSLVHLATAAPRLRFIDFSG-TRVTQRGVDTFRSLRPDCE 662
L+ L+LTG ITNR L +A + L + SG +RV+ RGV T S P E
Sbjct: 122 LQRLNLTGKSLITNRGLGAIARSCGDLEQLFLSGCSRVSDRGVRTLASKCPKLE 175
Score = 29.5 bits (63), Expect = 9.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 19 LDLSDDVLLCILKYCTPRDLKALGYTCPRLGALVVDRTLWESVDAR 64
L L DD+ L I Y + ++ +L C L D W +VD R
Sbjct: 26 LGLPDDIWLQIFSYFSVKERASLARVCREWNILCRDSRFWGAVDFR 71
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 32.7 bits (71), Expect = 1.0
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 461 PENGGGEQNDVKMDEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQNILYV 520
PE G EQ + +P+ V + ++ P K DQ+ G+ +NKE KQ+
Sbjct: 789 PEKTGQEQEKTDQELEKPDMVQEKQDNEQEKPDKG-EEKQDQEQGKPDKNKE-KQDREQE 846
Query: 521 NVGRRLHAMYRLAIPVYKVGESGDSQPAAPSR 552
+ L Y+ K E D + P +
Sbjct: 847 KPDKDLEKQYQKQEKPDKGQEKQDREQEKPDK 878
>SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)
Length = 473
Score = 32.3 bits (70), Expect = 1.3
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 192 TLTQNLLTSLEQQCPNLTTLALDYCNI--DCSMRAICHFPRRLKVLSLRGSKCYNQPLDK 249
T+T +L + Q CP L ++ L+ C + + +RLK L LR Y D+
Sbjct: 182 TITDEVLAKVGQSCPLLESVCLNGCKLVYGTTFSEFLSCCKRLKTLLLR----YTPVRDE 237
Query: 250 SFLFKIQDYLKELEELDVSEC 270
F ++ LEE+D+S C
Sbjct: 238 CFQCYSWKNIR-LEEIDISAC 257
>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
Length = 353
Score = 32.3 bits (70), Expect = 1.3
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 466 GEQNDVKMDEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQNI 517
GEQ ++P P+ Q D +P T+ ++K G+ +E E K NI
Sbjct: 91 GEQLSSSNEKPPPKTEGQEEKEQSDKKRPQTNGSQEEK-GQPSEKNEEKPNI 141
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 32.3 bits (70), Expect = 1.3
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 466 GEQNDVKMDEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQNI 517
GEQ ++P P+ Q D +P T+ ++K G+ +E E K NI
Sbjct: 369 GEQLSSSNEKPPPKTEGQEEKEQSDKKRPQTNGSQEEK-GQPSEKNEEKPNI 419
>SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)
Length = 1220
Score = 31.9 bits (69), Expect = 1.8
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 462 ENGGGEQNDVKMDEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKE 512
E+ GE+ V+ + E +S +DDP T+ T G+ E +E
Sbjct: 349 ESATGEKEQVEQNSTTKEKTENDSSVHEDDPNSCTAESTQSSAGDVKETEE 399
>SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)
Length = 376
Score = 31.5 bits (68), Expect = 2.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 20 DLSDDVLLCILKYCTPRDLKALGYTCPRLGALVVDRTLWESVD 62
D+ D VLL IL + +D C R + D TLW +D
Sbjct: 71 DIPDTVLLLILSHLNTQDRAHASMVCRRWNRVCRDATLWRMLD 113
>SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 31.5 bits (68), Expect = 2.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 475 EPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPK 514
+P N+G+S K+D S S K D+K EN E K
Sbjct: 59 QPSTPIANEGSSQEKEDSLSSPSKKIDRKREVDQENTETK 98
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 31.1 bits (67), Expect = 3.1
Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 7/158 (4%)
Query: 363 DNIPEHVE--LDDWEMEKRIRLDDIPRVCSCKSVIGNTPSSVYAMIRGDSRNRNDRYDDV 420
+N E +E DD EK+ ++ V + + +P SV + + R D DD
Sbjct: 1589 ENPEEKIEEKKDDTASEKKESSEEKMEVDGEEQKVEKSPESVD---KTEGHERTDVEDDE 1645
Query: 421 VKQDLIEDEIHRQNXXXXXXXXXXXXXXXXXXXXXXXXXXPENGGGEQNDVKMDEPRPEA 480
K D ++I +++ E G D +P EA
Sbjct: 1646 KKADDSNEDIGKKDESRDQAEDAKKEESKTEEMETDAESKQEETGNATVD--STKPTAEA 1703
Query: 481 VNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQNIL 518
++ +K+ + +K+D K E K PK L
Sbjct: 1704 KDEKTDDTKETKEGLKGDKSDPVTTPKAEEKSPKAEAL 1741
>SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27)
Length = 468
Score = 31.1 bits (67), Expect = 3.1
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 462 ENGGGEQNDVKMDEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKE 512
E+ GE++D + R EA +G+S + D P+P + K QK +K K+
Sbjct: 398 EDHDGEKSDEA--DHRDEADGEGSSPTADSPEPDSPTKPGQKVKKKKSFKD 446
>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
Length = 521
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 461 PENGGGEQNDVKMD---EPRPE--AVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQ 515
PE+ E+ + K+D E +PE A + +D P+ T ++ + K +K E+K PK+
Sbjct: 246 PEDNADEKPEKKLDDKSEDKPEDNADEKPEDNPEDKPEDKTEDRPEDKPEDKLEDK-PKE 304
Query: 516 N 516
N
Sbjct: 305 N 305
>SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36)
Length = 852
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 37 DLKALGYTCPRLGALVVDRTLWESVDARESPSGPKRLRWLLTHGLSSTTSELML 90
++K +G++ P GA V SV +SP+GPK WL+T LS+T + ++
Sbjct: 744 NIKEIGFSRP--GARV------RSVGDAKSPTGPKNPAWLMTGDLSATQTSTVI 789
>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
Length = 871
Score = 31.1 bits (67), Expect = 3.1
Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 7/158 (4%)
Query: 363 DNIPEHVE--LDDWEMEKRIRLDDIPRVCSCKSVIGNTPSSVYAMIRGDSRNRNDRYDDV 420
+N E +E DD EK+ ++ V + + +P SV + + R D DD
Sbjct: 168 ENPEEKIEEKKDDTASEKKESSEEKMEVDGEEQKVEKSPESVD---KTEGHERTDVEDDE 224
Query: 421 VKQDLIEDEIHRQNXXXXXXXXXXXXXXXXXXXXXXXXXXPENGGGEQNDVKMDEPRPEA 480
K D ++I +++ E G D +P EA
Sbjct: 225 KKADDSNEDIGKKDESRDQAEDAKKEESKTEEMETDAESKQEETGNATVD--STKPTAEA 282
Query: 481 VNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQNIL 518
++ +K+ + +K+D K E K PK L
Sbjct: 283 KDEKTDDTKETKEGLKGDKSDPVTTPKAEEKSPKAEAL 320
>SB_50167| Best HMM Match : PRP1_N (HMM E-Value=0.87)
Length = 267
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 475 EPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPK 514
+P N+G+S K D S S K D+K EN E K
Sbjct: 20 QPSTPIANEGSSQEKKDSLSSPSKKIDRKRDVDQENTETK 59
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 477 RPEAVNQGASTSKDDPQPSTSNKTDQKNGE---KTENKEPKQNI 517
RP+ K+ PQP KT+Q E KTE +PK+ +
Sbjct: 537 RPQLEEDVEKVKKEQPQPEEEFKTEQPQPEEKFKTEQPQPKEEV 580
>SB_44267| Best HMM Match : DUF602 (HMM E-Value=1.1e-29)
Length = 482
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 468 QNDVKMDEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQNI 517
+ +K DEP+P+ ++G KD+P+P S +K+ K KE ++I
Sbjct: 267 EGPMKKDEPKPKK-SEGPM-KKDEPKPKKSEGPMKKDEAKPAKKESSKHI 314
>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 30.3 bits (65), Expect = 5.4
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 476 PRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQNILYVNVGRRLHAMYRLAIP 535
P+ A + AS+S + +P +K ++ EK E K+P + NVG + ++ P
Sbjct: 401 PKKNAARESASSSSSEEEPE--DKPPKEKAEKEEEKKPLEAKTTPNVGSGASSAFQKNTP 458
Query: 536 VYKVGESGDSQPAAPS 551
S + P+ PS
Sbjct: 459 ----SPSPKTTPSKPS 470
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 30.3 bits (65), Expect = 5.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 19 LDLSDDVLLCILKYCTPRDLKALGYTCPRLGALVVDRTLWESV 61
L L D+++L I + +DL C + + +D TLW S+
Sbjct: 2706 LCLPDEIVLKIFSSLSHKDLATCALVCQQFYRIAMDETLWGSI 2748
>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 462 ENGGGEQNDVKMDEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQ 515
ENG ++D + P+AV+ Q S S T+ + G K + K+ K+
Sbjct: 52 ENGTESEDDEESSTKEPDAVHDAGEKKLYQEQTSESVTTNTRQGNKKKKKKKKK 105
>SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024)
Length = 287
Score = 30.3 bits (65), Expect = 5.4
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 193 LTQNLLTSLEQQCPNLTTLALDYCNI---DCSMRAICHFPRRLKVLSLRGSKCYNQPLDK 249
LT L + ++ +L L L C + +++ I RL VL L G C L
Sbjct: 77 LTSEALRIITRENISLQKLVLKNCKNPLKEDALKDILQRNPRLIVLDLSG--C--STLTN 132
Query: 250 SFLFKIQDYLKELEELDVSECEWVEP 275
F I ++ L+E+ +SEC WV P
Sbjct: 133 LTSFTIAEFCPLLKEIRLSECRWVSP 158
>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 29.9 bits (64), Expect = 7.1
Identities = 17/67 (25%), Positives = 27/67 (40%)
Query: 322 RESPVGDSEVSSFGWVGSLEELYVSPAMEAPAVHKHAHYIGDNIPEHVELDDWEMEKRIR 381
R SP+ + + E +A + + DNIPE +E D+++E R R
Sbjct: 69 RHSPINRRAWGDKSYFDLIAEAIEPSPCKAMTIKDIYRWFSDNIPELIERGDYQLEGRTR 128
Query: 382 LDDIPRV 388
P V
Sbjct: 129 FMRTPSV 135
>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
Length = 1199
Score = 29.9 bits (64), Expect = 7.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 473 MDEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQN 516
+ P+P+ ASTSKD + ++++K QK+ E + P N
Sbjct: 156 LQRPKPQKNVTPASTSKDQTEATSTDKLKQKSAEVIRPEIPAVN 199
>SB_2974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 29.9 bits (64), Expect = 7.1
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 12/102 (11%)
Query: 476 PRPEAVNQGASTSKDDPQPST--SNKTDQKNGEKTENKEPKQN------ILYVNVGRRLH 527
P E N +DD P T +N D + ++ E+ E N + + + +H
Sbjct: 108 PSDEDTNGETEDDEDDVLPCTPENNNEDAPDRDELEHCEISPNRCLLSELFQIVIAGHIH 167
Query: 528 AMYRLAIPVYKVGESGDSQPAAPSRRLDVSSAYQMTRFDPTT 569
AMY+ A+ ++ E G P RR SS Q + TT
Sbjct: 168 AMYKHALEERRIIEPG----TTPIRRRGGSSQSQRAKESSTT 205
>SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 29.9 bits (64), Expect = 7.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 473 MDEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQN 516
+ P+P+ ASTSKD + ++++K QK+ E + P N
Sbjct: 1203 LQRPKPQKNVTPASTSKDQTEATSTDKLKQKSAEVIRPEIPAVN 1246
>SB_17611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 29.5 bits (63), Expect = 9.4
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 21 LSDDVLLCILKYCTPRDLKALGYTCPRLGALVVDRTLWESVDARESPSGPKRL--RWLLT 78
L D++L+ I ++ RDL AL + C R L+ V R S P+ + +++L
Sbjct: 4 LPDELLVNIFRHLPARDLIALSFLCRRFRRLLDSVQFNRYVSFRNSWGVPEGMMCQYILK 63
Query: 79 HGLSSTTSELMLC 91
H T+ L C
Sbjct: 64 HANILTSLNLCNC 76
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 29.5 bits (63), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 466 GEQNDVKMDEPRPEAVNQGASTSKDDPQPS 495
GE++D DEP P +GAS + PS
Sbjct: 1058 GERSDSGQDEPAPSGPGEGASAEQQQQPPS 1087
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.134 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,660,593
Number of Sequences: 59808
Number of extensions: 1020192
Number of successful extensions: 2616
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2553
Number of HSP's gapped (non-prelim): 79
length of query: 684
length of database: 16,821,457
effective HSP length: 87
effective length of query: 597
effective length of database: 11,618,161
effective search space: 6936042117
effective search space used: 6936042117
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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