GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001814-TA|BGIBMGA001814-PA|IPR001810|Cyclin-like F-box
         (684 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   2.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   3.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   4.7  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   6.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   8.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 476  PRPEAVNQGASTSKDDPQPSTSNKTDQKNGEK-TENKEPK-QNILYVNVGRRLHAMYRLA 533
            P+P    QG + ++  PQ   +NK     G K T  K  K +N    ++   + A+ R  
Sbjct: 1000 PQPANAQQGQAQAQAKPQSQEANKPKPATGGKGTRPKRGKYRNYDRDSLVEAVRAVQRGE 1059

Query: 534  IPVYKVG 540
            + V++ G
Sbjct: 1060 MSVHRAG 1066


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 9/50 (18%), Positives = 22/50 (44%)

Query: 467 EQNDVKMDEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEKTENKEPKQN 516
           +QN  + ++ +     Q  +   D+ Q       +++NG +  + +  QN
Sbjct: 479 KQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQN 528



 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 462 ENGGGEQNDVKMDEPRPEAVNQGASTSKDDPQPSTSNKTDQKNGEK-TENKE 512
           +  G  QND + ++ +     Q  +    + Q       +++NG K  +NK+
Sbjct: 454 KQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQ 505


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 12/43 (27%), Positives = 16/43 (37%)

Query: 495 STSNKTDQKNGEKTENKEPKQNILYVNVGRRLHAMYRLAIPVY 537
           S SNKT   N     N       LY N+         + +P+Y
Sbjct: 84  SLSNKTIHNNNNYNNNNYNNYKKLYYNINYIEQVPVPIPVPIY 126


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 483 QGASTSKDDPQPSTSNKTDQKNGEK 507
           QGAS    DP PS+      ++G +
Sbjct: 115 QGASIDDSDPDPSSEPTVHSQSGSR 139


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 13/43 (30%), Positives = 16/43 (37%)

Query: 5   PSSENGGYAGSAELLDLSDDVLLCILKYCTPRDLKALGYTCPR 47
           PS  NGG     EL  L   V L  L       + +   TC +
Sbjct: 540 PSKRNGGETNKQELKRLKSTVSLLPLPLARTPSVMSASSTCKK 582


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,481
Number of Sequences: 429
Number of extensions: 8719
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 9
length of query: 684
length of database: 140,377
effective HSP length: 62
effective length of query: 622
effective length of database: 113,779
effective search space: 70770538
effective search space used: 70770538
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)